Prupe.2G194800_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016508
Physical Location & Seq
Forward (+)
23278829 .. 23279932
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G194800.1

Sequence Viewer

Length: 417 bp
ATGCTAAAAGAGACTTTGACACAAAGTTTTGCTGCTTCTGATGCCAAAGCTCCTGCACCACCCTCGCCATCCAAAGGTTCCCCATGGTGGCACCCTGACCCTAGCAAGCTTCAAAAGTGCACTGGAGCTTACCGCACTGCTCCGGGAACGTGCTACCGTGAGATTTTCGTATCTTTTTGGATACGAAAGGTTGCCATTGGGGAAGATTGCTGTAAGGACATTGTAGAAGCTGATGATGATTGTGCCTCTACTGTGTTCAGCCAGTTCAACAACCACTTCTTCCAGATGTTGAAGCAACATTGCTCGAACAAGGAAGGCCACGCCAGCACCATCGCCACCAAAGGCAACACCGGCACCACCTCCACCGAAAGCAACACCATCACCACCAAAGTCATAAGATTTCTAGTCGAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

139

Amino Acids

15.18

Weight (kDa)

7.62

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03272 AT5G17340
fragaria_vesca FvH4_1g21720
malus_domestica MD01G1086400.v1.1
prunus_persica Prupe.2G194700_v2.0.a1 Prupe.2G194800_v2.0.a1
rosa_multiflora Rmu_ssc0000197.1_g000089
rosa_roxburghii Rroxscaffold_2G00128080 Rroxscaffold_2G00128950
rosa_rugosa Rorug02G0198300 Rorug02G0198600
rosa_samantha Rh2BG266400 Rh2DG263900
rosa_wichuraiana Rw2G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 90, 353
AciI CCGC 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 74, 87
AgsI TTSAA 3 cut(s) 113, 268, 292
AluBI AGCT 4 cut(s) 50, 109, 128, 230
AluI AGCT 4 cut(s) 50, 109, 128, 230
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 5
Alw44I GTGCAC 1 cut(s) 118
AoxI GGCC 1 cut(s) 316
ApaLI GTGCAC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 122
BanI GGYRCC 2 cut(s) 90, 353
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 19
BccI CCATC 3 cut(s) 76, 338, 386
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciVI GTATCC 1 cut(s) 174
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 102, 404
BfuI GTATCC 1 cut(s) 174
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 79, 92, 355
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 87
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 127, 262
Bse3DI GCAATG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 74, 87
BseMI GCAATG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 127, 262
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 318
BshNI GGYRCC 2 cut(s) 90, 353
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 143, 351
BslI CCNNNNNNNGG 2 cut(s) 74, 87
BsmAI GTCTC 1 cut(s) 5
BsnI GGCC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 122
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 318
BspLI GGNNCC 3 cut(s) 79, 92, 355
BspT107I GGYRCC 2 cut(s) 90, 353
BsrDI GCAATG 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 2 cut(s) 127, 262
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 158, 253
BstC8I GCNNGC 2 cut(s) 107, 325
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 68
BstMAI GTCTC 1 cut(s) 5
BstMWI GCNNNNNNNGC 3 cut(s) 41, 324, 351
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 19
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 120, 135
Cac8I GCNNGC 2 cut(s) 107, 325
Cfr10I RCCGGY 1 cut(s) 350
CviAII CATG 1 cut(s) 84
CviJI RGCY 6 cut(s) 50, 109, 128, 230, 261, 318
CviKI_1 RGCY 6 cut(s) 50, 109, 128, 230, 261, 318
DdeI CTNAG 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 1 cut(s) 87
FaiI YATR 2 cut(s) 85, 395
FatI CATG 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 102, 404
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 143, 351
Hin1II CATG 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 410
HpaII CCGG 2 cut(s) 143, 351
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 158, 253
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 56, 120
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 324, 351
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 87
LmnI GCTCC 3 cut(s) 55, 125, 145
LpnPI CCDG 8 cut(s) 66, 108, 108, 156, 275, 296, 337, 364
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 31
MaeI CTAG 2 cut(s) 102, 404
MaeII ACGT 1 cut(s) 149
MboII GAAGA 2 cut(s) 215, 271
MhlI GDGCHC 1 cut(s) 122
MnlI CCTC 3 cut(s) 73, 256, 370
MspI CCGG 2 cut(s) 143, 351
MspR9I CCNGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 41, 324, 351
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 83
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 3 cut(s) 79, 92, 355
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 79, 92, 355
SatI GCNGC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 122
SetI ASST 8 cut(s) 52, 79, 111, 130, 152, 192, 232, 362
SfaNI GCATC 1 cut(s) 31
SsiI CCGC 1 cut(s) 133
SspMI CTAG 2 cut(s) 102, 404
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 158, 253
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 305, 408
TscAI CASTG 2 cut(s) 127, 142
TseI GCWGC 1 cut(s) 32
TspRI CASTG 2 cut(s) 127, 142
VneI GTGCAC 1 cut(s) 118
XspI CTAG 2 cut(s) 102, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.