Rmu_ssc0000197.1_g000089

Prolamin-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000197.1
Physical Location & Seq
Forward (+)
380099 .. 380434
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000197.1_g000089.1.cds

Sequence Viewer

Length: 336 bp
atgaagaaaggagttgctgctgtgctactcttccttgcttgtgtagccctattcttggctgcttctgatgctactgctgcacagcctctgaagctacctccgcagcaatcggaccgcgctaagttgcacaagtgcattgctgctttccacactgcaaggggtacttgtctgaagcagatctatgcatcttattggcatcgcaaactcaatattggagaagattgctgcaaggccattatggaagctgatgatgattgtgccgagaccattttaggtcacttcaagaaccctacttatgttcttttattgaaggaacattgctcaaagaaacactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.27

Weight (kDa)

8.87

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016508)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 2 cut(s) 101, 115
AcuI CTGAAG 2 cut(s) 110, 191
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 283, 310
AluBI AGCT 2 cut(s) 94, 245
AluI AGCT 2 cut(s) 94, 245
Alw26I GTCTC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 88
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 6 cut(s) 17, 59, 77, 103, 140, 225
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BbvI GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
BcoDI GTCTC 1 cut(s) 257
BglII AGATCT 1 cut(s) 177
BisI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
BlsI GCNGC 6 cut(s) 19, 61, 79, 105, 142, 227
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmsI GCATC 3 cut(s) 58, 194, 205
BsaI GGTCTC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse3DI GCAATG 2 cut(s) 135, 316
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 2 cut(s) 135, 316
BseXI GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 2 cut(s) 101, 115
BspANI GGCC 1 cut(s) 233
BspFNI CGCG 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 135, 316
BssMI GATC 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 5 cut(s) 44, 68, 77, 91, 100
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 331
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 112
CpoI CGGWCCG 1 cut(s) 112
Csp6I GTAC 1 cut(s) 162
CspI CGGWCCG 1 cut(s) 112
CviJI RGCY 6 cut(s) 47, 59, 85, 94, 233, 245
CviKI_1 RGCY 6 cut(s) 47, 59, 85, 94, 233, 245
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 110, 191
EcoT22I ATGCAT 1 cut(s) 187
FaiI YATR 3 cut(s) 183, 239, 297
FalI AAGNNNNNCTT 2 cut(s) 148, 180
Fnu4HI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
Fsp4HI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
GlaI GCGC 1 cut(s) 118
GluI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
HaeIII GGCC 1 cut(s) 233
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
Hpy188I TCNGA 4 cut(s) 67, 90, 112, 171
Hpy188III TCNNGA 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 80, 127, 135, 155, 185, 228
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 68, 77, 91, 100
HpyF3I CTNAG 1 cut(s) 120
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 177
Lsp1109I GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
LweI GCATC 3 cut(s) 58, 194, 205
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 3 cut(s) 16, 22, 230
MflI RGATCY 1 cut(s) 177
MnlI CCTC 2 cut(s) 96, 108
Mph1103I ATGCAT 1 cut(s) 187
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 5 cut(s) 44, 68, 77, 91, 100
NdeII GATC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 187
PkrI GCNGC 6 cut(s) 19, 61, 79, 105, 142, 227
PspPI GGNCC 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
Rsr2I CGGWCCG 1 cut(s) 112
RsrII CGGWCCG 1 cut(s) 112
SatI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 112
SetI ASST 4 cut(s) 96, 100, 247, 277
SfaNI GCATC 3 cut(s) 58, 194, 205
SinI GGWCC 1 cut(s) 112
SsiI CCGC 2 cut(s) 101, 115
SspI AATATT 1 cut(s) 211
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 6 cut(s) 17, 59, 77, 103, 140, 225
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.