Rh2BG266400

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016508
Physical Location & Seq
Reverse (-)
28637288 .. 28637623
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG266400.1

Sequence Viewer

Length: 336 bp
ATGAAGAAAGGAGTTGCTGCTGTGCTACTCTTCCTTGCTTGTGTAGCCCTATTCTTGGCTGCTTCTGATGCTACTGCTGCACAGCCTCTGAAGCTACCTCCGCAGCAATCGGAGCGTGCTAAGTTGCACAAGTGCATTGCTGCTTTCCACACTGCAAGGGGTACTTGTCTGAAGCAGATCTATGCATCTTATTGGCATCGCAAACTCAATATTGGAGAAGATTGCTGCAAGGCCATTAGGGAAGCTGACGATGATTGTGCCGAGACCATTTTAGGTCACTTCAAGAACCCTACTTATGTTCTTTTATTGAAGGAACATTGCTCAAAGAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

111

Amino Acids

12.31

Weight (kDa)

9.02

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 44 - 108 5.3e-09 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03272 AT5G17340
fragaria_vesca FvH4_1g21720
malus_domestica MD01G1086400.v1.1
prunus_persica Prupe.2G194700_v2.0.a1 Prupe.2G194800_v2.0.a1
rosa_multiflora Rmu_ssc0000197.1_g000089
rosa_roxburghii Rroxscaffold_2G00128080 Rroxscaffold_2G00128950
rosa_rugosa Rorug02G0198300 Rorug02G0198600
rosa_samantha Rh2BG266400 Rh2DG263900
rosa_wichuraiana Rw2G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 110, 191
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 283, 310
AluBI AGCT 2 cut(s) 94, 245
AluI AGCT 2 cut(s) 94, 245
Alw26I GTCTC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 88
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 6 cut(s) 17, 59, 77, 103, 140, 225
BbvI GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BcoDI GTCTC 1 cut(s) 257
BglII AGATCT 1 cut(s) 177
BisI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
BlsI GCNGC 6 cut(s) 19, 61, 79, 105, 142, 227
BmsI GCATC 3 cut(s) 58, 194, 205
BsaI GGTCTC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse3DI GCAATG 2 cut(s) 135, 316
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 2 cut(s) 135, 316
BseXI GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 135, 316
BssMI GATC 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 6 cut(s) 44, 68, 77, 91, 100, 112
BstV1I GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 331
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 88
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 6 cut(s) 47, 59, 85, 94, 233, 245
CviKI_1 RGCY 6 cut(s) 47, 59, 85, 94, 233, 245
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 257
Eco57I CTGAAG 2 cut(s) 110, 191
EcoT22I ATGCAT 1 cut(s) 187
FaiI YATR 2 cut(s) 183, 297
FalI AAGNNNNNCTT 2 cut(s) 148, 180
Fnu4HI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
Fsp4HI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
GluI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
HaeIII GGCC 1 cut(s) 233
Hpy188I TCNGA 4 cut(s) 67, 90, 112, 171
Hpy188III TCNNGA 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 80, 127, 135, 155, 185, 228
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 68, 77, 91, 100, 112
HpyF3I CTNAG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 6 cut(s) 4, 46, 64, 115, 127, 212
LweI GCATC 3 cut(s) 58, 194, 205
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 3 cut(s) 16, 22, 230
MflI RGATCY 1 cut(s) 177
MnlI CCTC 2 cut(s) 96, 108
Mph1103I ATGCAT 1 cut(s) 187
MwoI GCNNNNNNNGC 6 cut(s) 44, 68, 77, 91, 100, 112
NdeII GATC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 187
PkrI GCNGC 6 cut(s) 19, 61, 79, 105, 142, 227
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 6 cut(s) 18, 60, 78, 104, 141, 226
Sau3AI GATC 1 cut(s) 177
SetI ASST 4 cut(s) 96, 100, 247, 277
SfaNI GCATC 3 cut(s) 58, 194, 205
SsiI CCGC 1 cut(s) 101
SspI AATATT 1 cut(s) 211
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 6 cut(s) 17, 59, 77, 103, 140, 225
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.