Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017156

Physical Location & Seq

Genomic Coordinates Reverse (-)

1349248 .. 1349964

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGATTTGGATTTTCCGATTTGCATATTGAAAATGAATCTCCAGTGTTGTGAAGACTTCCCTTCACGGGTCAAGAAGCTTTTGCGCCAAGTAAAAGGAGTTTACGCCATAACCATAGACCCGGTGAAGGGTCTGATTTTGGTCTGTGGCACAGCAGAACCTTCGGTGCTTATCAAAGCCGTCGCAAAATTGGGGCAAAGTCCCCAACTTTACGCCTACGAGAAGGATCCAGCTACAGCAAAGACCCGATTCCGCACCTTGCTTAAACGTTATGCCACCAACAAGACACAAGATAAACCATCCCCGCCTGCACCACCTGTCACGGCAACCACCCCCGTGGAAACTTGTCCAGCAGGAGGTGAAACATTTAGAGGTTTTGGGTATCCTGGACCAACGACGATGATGCAGATGCCCGCCTTTTCGTTGCCCCCACCGAGAGGACTGCCGGGATGGTTAGCACCACCGACAAACCCGAGGTTGAAGTACGAGGAGCCAAAGGTGACGCCGAGGAAGCCGCCTGCGCCTTATCCTTTCGATTACTACGAAAACTTGGGGTTTCCACCATCCGACTCTCTTTTCAACTATTTCAGCGATGATAACCCTCAACCTTGCTCCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

208

Amino Acids

23.04

Weight (kDa)

8.83

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04900
fragaria_vesca	FvH4_2g23991
malus_domestica	MD11G1290300.v1.1
prunus_persica	Prupe.7G246000_v2.0.a1 Prupe.8G245300_v2.0.a1
rosa_laevigata	RLG00000012095
rosa_multiflora	Rmu_sc0002226.1_g000022
rosa_roxburghii	Rroxscaffold_7G00175820
rosa_rugosa	Rorug06G0221100
rosa_samantha	Rh6AG333700 Rh6BG340700 Rh6CG346900 Rh6DG334100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	256, 308, 417, 518
AclI	AACGTT	1 cut(s)	271
AclWI	GGATC	2 cut(s)	224, 237
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	5 cut(s)	70, 130, 131, 359, 440
AgsI	TTSAA	3 cut(s)	34, 484, 583
AjnI	CCWGG	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	2 cut(s)	82, 236
AluI	AGCT	2 cut(s)	82, 236
AlwI	GGATC	2 cut(s)	224, 237
Ama87I	CYCGRG	1 cut(s)	475
AspLEI	GCGC	2 cut(s)	90, 526
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	2 cut(s)	125, 450
AsuHPI	GGTGA	3 cut(s)	139, 374, 514
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	4 cut(s)	310, 447, 574, 626
BceAI	ACGGC	2 cut(s)	167, 342
BcgI	CGANNNNNNTGC	6 cut(s)	147, 181, 388, 422, 427, 461
BciT130I	CCWGG	1 cut(s)	390
BciVI	GTATCC	1 cut(s)	396
BcnI	CCSGG	2 cut(s)	125, 450
BfmI	CTRYAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	3 cut(s)	125, 390, 450
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	231, 495
BmrFI	CCNGG	3 cut(s)	125, 390, 450
BmsI	GCATC	2 cut(s)	396, 402
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	125, 450
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	339, 476, 509
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 130, 131, 359, 440
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	339, 476, 509
BseGI	GGATG	3 cut(s)	302, 458, 566
BseLI	CCNNNNNNNGG	5 cut(s)	70, 130, 131, 359, 440
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	2 cut(s)	125, 449
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	5 cut(s)	70, 130, 131, 359, 440
BsmFI	GGGAC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	4 cut(s)	256, 308, 417, 518
BspLI	GGNNCC	2 cut(s)	231, 495
BspPI	GGATC	2 cut(s)	224, 237
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	339, 476, 509
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	312, 417, 522
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	302, 458, 566
BstHHI	GCGC	2 cut(s)	90, 526
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 523
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	123, 388, 448
BstSFI	CTRYAG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	302, 458, 566
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	3 cut(s)	312, 417, 522
CfoI	GCGC	2 cut(s)	90, 526
Cfr13I	GGNCC	1 cut(s)	392
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	1 cut(s)	622
CviJI	RGCY	5 cut(s)	82, 182, 236, 496, 517
CviKI_1	RGCY	5 cut(s)	82, 182, 236, 496, 517
CviQI	GTAC	1 cut(s)	487
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	1 cut(s)	625
FaiI	YATR	5 cut(s)	29, 113, 119, 276, 623
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	621
FauI	CCCGC	2 cut(s)	315, 424
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	3 cut(s)	289, 465, 553
Fsp4HI	GCNGC	1 cut(s)	518
GlaI	GCGC	2 cut(s)	89, 525
GluI	GCNGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	2 cut(s)	125, 449
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	2 cut(s)	90, 526
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	2 cut(s)	88, 524
HinP1I	GCGC	2 cut(s)	88, 524
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	40, 252, 572
HpaII	CCGG	2 cut(s)	125, 449
HphI	GGTGA	3 cut(s)	139, 374, 514
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	21, 138, 571
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	188, 403
HpyAV	CCTTC	4 cut(s)	75, 124, 174, 220
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	27, 314, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 523
HpySE526I	ACGT	1 cut(s)	271
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	2 cut(s)	88, 524
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	493, 620
LweI	GCATC	2 cut(s)	396, 402
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	2 cut(s)	322, 502
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	7 cut(s)	353, 368, 434, 471, 484, 504, 615
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	338
MspI	CCGG	2 cut(s)	125, 449
MspR9I	CCNGG	3 cut(s)	125, 390, 450
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	514, 523
NciI	CCSGG	2 cut(s)	125, 450
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	2 cut(s)	231, 495
NmeAIII	GCCGAG	1 cut(s)	534
NmuCI	GTSAC	2 cut(s)	322, 502
OliI	CACNNNNGTG	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	40, 252
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	519
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Psp1406I	AACGTT	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	231, 495
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	3 cut(s)	125, 390, 450
SfaNI	GCATC	2 cut(s)	396, 402
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	4 cut(s)	256, 308, 417, 518
StyD4I	CCNGG	3 cut(s)	123, 388, 448
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	537
TasI	AATT	1 cut(s)	191
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	40, 252
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	2 cut(s)	322, 502
Tsp45I	GTSAC	2 cut(s)	322, 502
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.