Rh6CG346900

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017156
Physical Location & Seq
Reverse (-)
53734433 .. 53735416
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG346900.1

Sequence Viewer

Length: 798 bp
ATGGATTCTACAAAAGCATTATATTTGCAGCCCTATTCTTCTGCATCACAAGGATTTGAAATAATTCCAAAGGAACAGCATCAACATCATCATGCAGCCCCGCCTCGACCTCCAGGTCCTCCTATTAAAGTGAATCTCAAAAGTAATTGTTTGAATTGTCAAGTGAAGCTGAAGAAAAAGTTGCAGAAGATGAGTGGGGTGAATGATGTGGACATAGTTCCAGAACAAGGTGGCACTGTAACAGTTTCAGGTAGCATAGACTCTAAGGTGCTCATGGAGGTGATCCGAAATAATTACAAAAAGGCCAAGTTACTTTGCCCCTTTGATCAGAAGGAGCCCTCCGAAAATACAGTTGGAAAAAAATTTTCGTGCTCTGATGATGAACATGATGATAGCGAGGACGGCAATGACCACAATTTTGCTGTAAACAATAGTAACAACGAGGCCGGTCTAAGTGAACCGAAGAAAGAGAAGAAGACGAAGATGTGTGGTATAATGAGATGTTTTGGCAAGAAAAGTAACCCTATGGCCATGCGTCCACCTCCTCCCGCACCATCACCTGAGCCTCGGCCCCCCATGGGTTTTCCGACAAATGGATTTTTCCTTGGGCCGCCAAGGCCAGGATTTCGGCCGGGAATGCCATGGATGCCGCCAATTGGGCCACCACCGCCATATGGGTATTTAGGGAGGCCGCCATTACCCGCGGACTACGGATATCCTTTCCAGAGGTCGCCGCCAAGATTGAACCCTATGGTACACTACACCAGTTATAAGGACAATTATCGTCATCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

265

Amino Acids

29.53

Weight (kDa)

9.24

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04900
fragaria_vesca FvH4_2g23991
malus_domestica MD11G1290300.v1.1
prunus_persica Prupe.7G246000_v2.0.a1 Prupe.8G245300_v2.0.a1
rosa_laevigata RLG00000012095
rosa_multiflora Rmu_sc0002226.1_g000022
rosa_roxburghii Rroxscaffold_7G00175820
rosa_rugosa Rorug06G0221100
rosa_samantha Rh6AG333700 Rh6BG340700 Rh6CG346900 Rh6DG334100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AasI GACNNNNNNGTC 1 cut(s) 114
AccII CGCG 1 cut(s) 704
AciI CCGC 9 cut(s) 101, 549, 611, 650, 668, 692, 702, 704, 734
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 2 cut(s) 528, 629
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 756
AfiI CCNNNNNNNGG 6 cut(s) 227, 578, 593, 620, 656, 674
AgsI TTSAA 3 cut(s) 59, 154, 745
AjnI CCWGG 2 cut(s) 112, 619
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw21I GWGCWC 2 cut(s) 273, 374
AlwI GGATC 1 cut(s) 277
AoxI GGCC 9 cut(s) 303, 444, 528, 569, 608, 617, 629, 659, 689
ApeKI GCWGC 2 cut(s) 28, 95
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 4 cut(s) 116, 570, 608, 659
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 3 cut(s) 211, 292, 549
AvaII GGWCC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 530
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 273, 374
BbvI GCAGC 2 cut(s) 40, 107
BccI CCATC 1 cut(s) 562
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 2 cut(s) 114, 621
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 1 cut(s) 633
BfaI CTAG 1 cut(s) 796
BglI GCCNNNNNGGC 2 cut(s) 616, 658
BisI GCNGC 6 cut(s) 29, 96, 611, 650, 692, 734
BlsI GCNGC 6 cut(s) 30, 97, 612, 651, 693, 735
Bme1390I CCNGG 3 cut(s) 114, 621, 633
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 4 cut(s) 116, 570, 608, 659
BmiI GGNNCC 2 cut(s) 336, 572
BmrFI CCNGG 3 cut(s) 114, 621, 633
BmsI GCATC 3 cut(s) 53, 88, 636
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 633
BsaJI CCNNGG 6 cut(s) 566, 576, 604, 614, 641, 702
Bsc4I CCNNNNNNNGG 6 cut(s) 227, 578, 593, 620, 656, 674
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 2 cut(s) 114, 621
BseDI CCNNGG 6 cut(s) 566, 576, 604, 614, 641, 702
BseGI GGATG 2 cut(s) 651, 787
BseLI CCNNNNNNNGG 6 cut(s) 227, 578, 593, 620, 656, 674
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 765
BseRI GAGGAG 1 cut(s) 534
BseX3I CGGCCG 1 cut(s) 629
BseXI GCAGC 2 cut(s) 40, 107
Bsh1236I CGCG 1 cut(s) 704
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 9 cut(s) 305, 446, 530, 571, 610, 619, 631, 661, 691
BsiEI CGRYCG 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 273, 374
BsiSI CCGG 2 cut(s) 447, 632
BslI CCNNNNNNNGG 6 cut(s) 227, 578, 593, 620, 656, 674
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 9 cut(s) 305, 446, 530, 571, 610, 619, 631, 661, 691
Bsp1286I GDGCHC 3 cut(s) 273, 339, 374
Bsp143I GATC 2 cut(s) 282, 325
Bsp19I CCATGG 2 cut(s) 576, 641
BspACI CCGC 9 cut(s) 101, 549, 611, 650, 668, 692, 702, 704, 734
BspANI GGCC 9 cut(s) 305, 446, 530, 571, 610, 619, 631, 661, 691
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 704
BspLI GGNNCC 2 cut(s) 336, 572
BspPI GGATC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 1 cut(s) 765
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 6 cut(s) 566, 576, 604, 614, 641, 702
BssMI GATC 2 cut(s) 282, 325
BssT1I CCWWGG 4 cut(s) 576, 604, 614, 641
Bst2UI CCWGG 2 cut(s) 114, 621
Bst4CI ACNGT 3 cut(s) 238, 244, 352
BstDEI CTNAG 3 cut(s) 264, 452, 561
BstDSI CCRYGG 3 cut(s) 576, 641, 702
BstF5I GGATG 2 cut(s) 651, 787
BstFNI CGCG 1 cut(s) 704
BstKTI GATC 2 cut(s) 285, 328
BstMBI GATC 2 cut(s) 282, 325
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 6 cut(s) 402, 616, 637, 646, 658, 667
BstNI CCWGG 2 cut(s) 114, 621
BstSCI CCNGG 3 cut(s) 112, 619, 631
BstUI CGCG 1 cut(s) 704
BstV1I GCAGC 2 cut(s) 40, 107
BstV2I GAAGAC 1 cut(s) 482
BstZI CGGCCG 1 cut(s) 629
BsuRI GGCC 9 cut(s) 305, 446, 530, 571, 610, 619, 631, 661, 691
BtgI CCRYGG 3 cut(s) 576, 641, 702
BtsCI GGATG 2 cut(s) 651, 787
BtsIMutI CAGTG 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 4 cut(s) 116, 570, 608, 659
Cfr42I CCGCGG 1 cut(s) 705
CseI GACGC 1 cut(s) 524
Csp6I GTAC 1 cut(s) 755
CviAII CATG 6 cut(s) 92, 274, 386, 532, 577, 642
CviQI GTAC 1 cut(s) 755
DdeI CTNAG 3 cut(s) 264, 452, 561
DpnI GATC 2 cut(s) 284, 327
DpnII GATC 2 cut(s) 282, 325
DrdI GACNNNNNNGTC 1 cut(s) 114
DseDI GACNNNNNNGTC 1 cut(s) 114
EaeI YGGCCR 2 cut(s) 528, 629
EagI CGGCCG 1 cut(s) 629
EclXI CGGCCG 1 cut(s) 629
Eco130I CCWWGG 4 cut(s) 576, 604, 614, 641
Eco24I GRGCYC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 116
Eco52I CGGCCG 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 112, 619
EcoRV GATATC 1 cut(s) 716
EcoT14I CCWWGG 4 cut(s) 576, 604, 614, 641
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 4 cut(s) 576, 604, 614, 641
FaeI CATG 6 cut(s) 95, 277, 389, 535, 580, 645
FatI CATG 6 cut(s) 91, 273, 385, 531, 576, 641
FauI CCCGC 3 cut(s) 108, 556, 709
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 6 cut(s) 29, 96, 611, 650, 692, 734
FokI GGATG 2 cut(s) 658, 774
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 6 cut(s) 29, 96, 611, 650, 692, 734
FspBI CTAG 1 cut(s) 796
GluI GCNGC 6 cut(s) 29, 96, 611, 650, 692, 734
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 9 cut(s) 305, 446, 530, 571, 610, 619, 631, 661, 691
HapII CCGG 2 cut(s) 447, 632
HgaI GACGC 1 cut(s) 524
Hin1II CATG 6 cut(s) 95, 277, 389, 535, 580, 645
HinfI GANTC 3 cut(s) 5, 133, 260
HpaII CCGG 2 cut(s) 447, 632
HphI GGTGA 3 cut(s) 211, 292, 549
Hpy166II GTNNAC 5 cut(s) 211, 427, 458, 539, 757
Hpy188I TCNGA 5 cut(s) 287, 330, 343, 376, 588
Hpy188III TCNNGA 2 cut(s) 221, 724
Hpy8I GTNNAC 5 cut(s) 211, 427, 458, 539, 757
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 3 cut(s) 238, 244, 352
HpyCH4V TGCA 4 cut(s) 28, 44, 95, 184
HpyF10VI GCNNNNNNNGC 6 cut(s) 402, 616, 637, 646, 658, 667
HpyF3I CTNAG 3 cut(s) 264, 452, 561
Hsp92II CATG 6 cut(s) 95, 277, 389, 535, 580, 645
Ksp22I TGATCA 1 cut(s) 325
KspI CCGCGG 1 cut(s) 705
Kzo9I GATC 2 cut(s) 282, 325
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 2 cut(s) 40, 107
LweI GCATC 3 cut(s) 53, 88, 636
MaeI CTAG 1 cut(s) 796
MaeIII GTNAC 4 cut(s) 238, 309, 434, 518
MalI GATC 2 cut(s) 284, 327
MboI GATC 2 cut(s) 282, 325
MboII GAAGA 7 cut(s) 30, 184, 199, 475, 484, 487, 493
MfeI CAATTG 1 cut(s) 654
MhlI GDGCHC 3 cut(s) 273, 339, 374
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 8 cut(s) 63, 145, 154, 292, 362, 415, 654, 778
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 334, 611
Mox20I TGGCCA 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 63
MscI TGGCCA 1 cut(s) 530
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 90, 278
Msp20I TGGCCA 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 2 cut(s) 447, 632
MspR9I CCNGG 3 cut(s) 114, 621, 633
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 2 cut(s) 114, 621
MvnI CGCG 1 cut(s) 704
MwoI GCNNNNNNNGC 6 cut(s) 402, 616, 637, 646, 658, 667
NciI CCSGG 1 cut(s) 633
NcoI CCATGG 2 cut(s) 576, 641
NdeI CATATG 1 cut(s) 673
NdeII GATC 2 cut(s) 282, 325
NlaIII CATG 6 cut(s) 95, 277, 389, 535, 580, 645
NlaIV GGNNCC 2 cut(s) 336, 572
NmeAIII GCCGAG 1 cut(s) 547
PctI GAATGC 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 5, 133
PkrI GCNGC 6 cut(s) 30, 97, 612, 651, 693, 735
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 116
PsiI TTATAA 1 cut(s) 771
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 112, 619
PspGI CCWGG 2 cut(s) 112, 619
PspN4I GGNNCC 2 cut(s) 336, 572
PspPI GGNCC 4 cut(s) 116, 570, 608, 659
PspPPI RGGWCCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 756
RsaNI GTAC 1 cut(s) 755
RseI CAYNNNNRTG 2 cut(s) 90, 278
SacII CCGCGG 1 cut(s) 705
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 6 cut(s) 29, 96, 611, 650, 692, 734
Sau3AI GATC 2 cut(s) 282, 325
Sau96I GGNCC 4 cut(s) 116, 570, 608, 659
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 3 cut(s) 114, 621, 633
SduI GDGCHC 3 cut(s) 273, 339, 374
SfaNI GCATC 3 cut(s) 53, 88, 636
SfiI GGCCNNNNNGGCC 1 cut(s) 616
Sfr303I CCGCGG 1 cut(s) 705
SgrBI CCGCGG 1 cut(s) 705
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 90, 278
Sse9I AATT 8 cut(s) 63, 145, 154, 292, 362, 415, 654, 778
SsiI CCGC 9 cut(s) 101, 549, 611, 650, 668, 692, 702, 704, 734
SspMI CTAG 1 cut(s) 796
StyD4I CCNGG 3 cut(s) 112, 619, 631
StyI CCWWGG 4 cut(s) 576, 604, 614, 641
TaaI ACNGT 3 cut(s) 238, 244, 352
TaqI TCGA 1 cut(s) 106
TasI AATT 8 cut(s) 63, 145, 154, 292, 362, 415, 654, 778
TauI GCSGC 4 cut(s) 613, 652, 694, 736
TfiI GAWTC 2 cut(s) 5, 133
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 241
TseI GCWGC 2 cut(s) 28, 95
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.