AT3G05280

Integral membrane Yip1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010775
Physical Location & Seq
Reverse (-)
1503689 .. 1505721
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05280.1

Sequence Viewer

Length: 846 bp
ATGATGTCCGGCGGGAACTACACGACTATAGACAGCCAGAAAGTCTCTGGATCTGTACCTTCTGTTCCAGATCCAGGCCATACCACCGTCAAATTCGCAGAGTCAAATCTACAAACTTTTCCTCCATCTGCTACTCAGGGCAAGATCTCTGGTGGTAGTAATCCCCCTCGTGATGCTGACGATTCATTTTCTGGGCATGGTAATGGTAGTACAGATGAACCTCAGTCTGGTGGCTGGCTTCATAAATTCACTGTTGGTGCTTACAAGCCCTTCTTTGATGTCGACACTTCCGATGTAGTTGAGAGACTCAAAGAATCCCTTTTCCCATTCCGTGGAACATTTACAGAGAAGACAGCTGATAAACCTGACTTGTATGGTCCATTCTGGATCTGCACCACCTTGATATTCGTTGCAGCATCTATCGGCACATTTGTCACATACATAGCACACAAATGGAAGAAACAAGAATGGAACTACGATATTAATCTAGTGACTTGGTCTGCAGGAGTATTCTATGGCTATGTCACAATTGTTCCTCTCGCATTATATGTCGTTCTCAAATACTTCTCTGCACCATCAGGCCTAGTCCAACTCTTCTGTCTTTATGGCTATTCCCTTTTCGTCTTTATCCCAGCATTGTGTCTCTCGGTCGTGCCAGTGGAGATTTTCAGATGGGTCATCGCAGGTGTAGCTGGGTTCATGTCCGCAACATTTGTGGCTTTGAACCTCAAAGCGCATATCAATTCCGCTGGAGAGAGATCGATCCTGATTATCGCCAGCATCTTTCTTTTGCAGCTCGCTCTTGCAGTTGTGCTAAAGCTCTATATCTTCAATGTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

281

Amino Acids

30.75

Weight (kDa)

6.95

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 111 - 271 2.7e-18 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 674
Acc36I ACCTGC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 332
AccI GTMKAC 1 cut(s) 282
AciI CCGC 3 cut(s) 12, 705, 747
AclWI GGATC 4 cut(s) 58, 65, 395, 757
AcsI RAATTY 2 cut(s) 92, 245
AfaI GTAC 2 cut(s) 57, 211
AfiI CCNNNNNNNGG 3 cut(s) 74, 227, 332
AgsI TTSAA 2 cut(s) 724, 832
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 4 cut(s) 356, 692, 796, 820
AluI AGCT 4 cut(s) 356, 692, 796, 820
Alw26I GTCTC 3 cut(s) 49, 298, 647
AlwI GGATC 4 cut(s) 58, 65, 395, 757
AoxI GGCC 2 cut(s) 76, 580
ApeKI GCWGC 2 cut(s) 413, 793
ApoI RAATTY 2 cut(s) 92, 245
AseI ATTAAT 1 cut(s) 483
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 1 cut(s) 377
AvaII GGWCC 1 cut(s) 377
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 425, 805
BccI CCATC 3 cut(s) 133, 583, 666
BciT130I CCWGG 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 49, 298, 647
BfaI CTAG 2 cut(s) 488, 584
BfmI CTRYAG 2 cut(s) 27, 501
BfuAI ACCTGC 1 cut(s) 674
BglII AGATCT 1 cut(s) 144
BisI GCNGC 2 cut(s) 414, 794
BlsI GCNGC 2 cut(s) 415, 795
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 3 cut(s) 163, 425, 789
BpiI GAAGAC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 771
Bsa29I ATCGAT 1 cut(s) 761
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 227, 332
Bse1I ACTGG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 761
BseDI CCNNGG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 74, 227, 332
BseMII CTCAG 2 cut(s) 149, 236
BseNI ACTGG 1 cut(s) 656
BseXI GCAGC 2 cut(s) 425, 805
BseYI CCCAGC 2 cut(s) 631, 692
BsgI GTGCAG 2 cut(s) 376, 555
Bsh1285I CGRYCG 1 cut(s) 651
BshFI GGCC 2 cut(s) 78, 582
BshVI ATCGAT 1 cut(s) 761
BsiEI CGRYCG 1 cut(s) 651
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 74, 227, 332
BsmAI GTCTC 3 cut(s) 49, 298, 647
BsnI GGCC 2 cut(s) 78, 582
Bsp143I GATC 6 cut(s) 50, 70, 144, 387, 758, 762
BspACI CCGC 3 cut(s) 12, 705, 747
BspANI GGCC 2 cut(s) 78, 582
BspCNI CTCAG 2 cut(s) 148, 235
BspDI ATCGAT 1 cut(s) 761
BspMAI CTGCAG 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 4 cut(s) 58, 65, 395, 757
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 6 cut(s) 50, 70, 144, 387, 758, 762
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 88, 253
Bst6I CTCTTC 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 236, 778, 798
BstDEI CTNAG 2 cut(s) 135, 222
BstDSI CCRYGG 1 cut(s) 331
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 6 cut(s) 53, 73, 147, 390, 761, 765
BstMAI GTCTC 3 cut(s) 49, 298, 647
BstMBI GATC 6 cut(s) 50, 70, 144, 387, 758, 762
BstMCI CGRYCG 1 cut(s) 651
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 27, 501
BstV1I GCAGC 2 cut(s) 425, 805
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 4 cut(s) 50, 70, 144, 387
BstYI RGATCY 4 cut(s) 50, 70, 144, 387
Bsu15I ATCGAT 1 cut(s) 761
BsuRI GGCC 2 cut(s) 78, 582
BsuTUI ATCGAT 1 cut(s) 761
BtgI CCRYGG 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 249, 663
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 3 cut(s) 236, 778, 798
CfoI GCGC 1 cut(s) 736
Cfr13I GGNCC 1 cut(s) 377
ClaI ATCGAT 1 cut(s) 761
Csp6I GTAC 2 cut(s) 56, 210
CspCI CAANNNNNGTGG 2 cut(s) 696, 731
CviAII CATG 2 cut(s) 197, 700
CviQI GTAC 2 cut(s) 56, 210
DdeI CTNAG 2 cut(s) 135, 222
DpnI GATC 6 cut(s) 52, 72, 146, 389, 760, 764
DpnII GATC 6 cut(s) 50, 70, 144, 387, 758, 762
Eam1104I CTCTTC 1 cut(s) 599
EarI CTCTTC 1 cut(s) 599
Eco147I AGGCCT 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 200, 703
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 303, 335
FatI CATG 2 cut(s) 196, 699
FauI CCCGC 1 cut(s) 5
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 414, 794
Fsp4HI GCNGC 2 cut(s) 414, 794
FspBI CTAG 2 cut(s) 488, 584
GlaI GCGC 1 cut(s) 735
GluI GCNGC 2 cut(s) 414, 794
GsaI CCCAGC 2 cut(s) 635, 696
GsuI CTGGAG 1 cut(s) 771
HaeIII GGCC 2 cut(s) 78, 582
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 736
Hin1II CATG 2 cut(s) 200, 703
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 4 cut(s) 101, 182, 306, 314
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 292, 671
Hpy188III TCNNGA 5 cut(s) 48, 68, 170, 385, 766
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 69, 280
HpyCH4III ACNGT 2 cut(s) 88, 253
HpyCH4V TGCA 6 cut(s) 393, 413, 503, 572, 793, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 2 cut(s) 135, 222
Hsp92II CATG 2 cut(s) 200, 703
HspAI GCGC 1 cut(s) 734
Kzo9I GATC 6 cut(s) 50, 70, 144, 387, 758, 762
Lsp1109I GCAGC 2 cut(s) 425, 805
LweI GCATC 3 cut(s) 163, 425, 789
MaeI CTAG 2 cut(s) 488, 584
MaeIII GTNAC 3 cut(s) 433, 490, 523
MalI GATC 6 cut(s) 52, 72, 146, 389, 760, 764
MboI GATC 6 cut(s) 50, 70, 144, 387, 758, 762
MboII GAAGA 4 cut(s) 361, 469, 586, 820
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 4 cut(s) 50, 70, 144, 387
MluCI AATT 4 cut(s) 92, 245, 528, 742
MlyI GAGTC 2 cut(s) 110, 300
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 5 cut(s) 132, 177, 231, 546, 737
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 2 cut(s) 201, 451
MspA1I CMGCKG 2 cut(s) 356, 749
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 689
NdeII GATC 6 cut(s) 50, 70, 144, 387, 758, 762
NlaIII CATG 2 cut(s) 200, 703
NmuCI GTSAC 3 cut(s) 433, 490, 523
PaqCI CACCTGC 1 cut(s) 674
PceI AGGCCT 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 2 cut(s) 182, 314
PflFI GACNNNGTC 1 cut(s) 496
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 2 cut(s) 415, 795
PleI GAGTC 2 cut(s) 109, 300
PpsI GAGTC 2 cut(s) 109, 300
PshBI ATTAAT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 2 cut(s) 631, 692
PspGI CCWGG 1 cut(s) 73
PspPI GGNCC 1 cut(s) 377
PsrI GAACNNNNNNTAC 2 cut(s) 48, 80
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 4 cut(s) 50, 70, 144, 387
PsyI GACNNNGTC 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 2 cut(s) 57, 211
RsaNI GTAC 2 cut(s) 56, 210
RseI CAYNNNNRTG 2 cut(s) 201, 451
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 2 cut(s) 414, 794
Sau3AI GATC 6 cut(s) 50, 70, 144, 387, 758, 762
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 2 cut(s) 110, 300
ScrFI CCNGG 1 cut(s) 75
SfaNI GCATC 3 cut(s) 163, 425, 789
SfcI CTRYAG 2 cut(s) 27, 501
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 201, 451
Sse9I AATT 4 cut(s) 92, 245, 528, 742
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 3 cut(s) 12, 705, 747
SspMI CTAG 2 cut(s) 488, 584
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 88, 253
TaqI TCGA 2 cut(s) 282, 761
TaqII GACCGA 1 cut(s) 637
TasI AATT 4 cut(s) 92, 245, 528, 742
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 2 cut(s) 182, 314
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 2 cut(s) 256, 663
TseFI GTSAC 3 cut(s) 433, 490, 523
TseI GCWGC 2 cut(s) 413, 793
Tsp45I GTSAC 3 cut(s) 433, 490, 523
TspDTI ATGAA 4 cut(s) 174, 230, 231, 688
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 256, 663
Tth111I GACNNNGTC 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 2 cut(s) 92, 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 2 cut(s) 488, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.