Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010775

Physical Location & Seq

Genomic Coordinates Forward (+)

28697188 .. 28700392

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G326800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATGTCCGGGAACTATACGAGCATTGATAACCAAAACGTCTCAGGATCCGTTCCTGCTGCGGTTCCAGATCCAGGTCACCTCACCGTCAAATTCGAAGATTCAAACCTTCAGACATTTCCTCCATCTGAGGCACACGGGAAGATTGCTAGTGGTGCTCGCCCTCCTCGTGATGCCGATGACACGTTTTCAAAACCTGTATCTGGTTCTGATGAATCCCAGCAGAGTGGTTGGCTACGGGTATTCTCTGTATCTTCTTACAAGTCATACTTTGATGTTGACACTTCTGATGTTCTAGAGAGGATTAAAGATTCACTCCTTCCATTCAGCGGAACGTTCAATGAGAAAACATCTAACAGCCCAGATTTGTATGGACCTTTCTGGATATGCACTACTCTAATATTTGTAGCAGCTGCCATCGGCACTTTTGTGACATATGTAGCACACAAGATCAAGAGTAAAGATTGGGAATATGACATTAATGTGGTGCAATGGTCTGCTGGATTGTTCTATGGCTATGTTACTATTGTTCCTCTTGTACTGTATGTAATTCTCAAATACTTCTCAGCACCATCAGGTCTCGTTCAGCTGTTTTGTCTCTATGGCTACTCCCTGTTTGTCTTTATTCCAGCATTGTGCCTCTCGATTGTGCCCATCGAAATCTTCAGATGGGTAGTTGCAGGCGTAGCTGGGGTTATGTCTGCCACCTTTGTTGCAGTCAACCTTCGAGCCCACATCGTTTCTGCCGGTGAAAGGTGGTTCTTGATTGTCGCCGGGATCTTTCTGTTGCAGTTGGCTCTGTCTGTCGTGCTAAAACTCTATTTGTTCACCATAACAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

281

Amino Acids

30.78

Weight (kDa)

5.53

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05280 AT5G27490
fragaria_vesca	FvH4_6g05750 FvH4_6g05750
malus_domestica	MD04G1206000.v1.1 MD12G1220100.v1.1
prunus_persica	Prupe.6G326800_v2.0.a1 Prupe.6G326800_v2.0.a1 Prupe.6G326800_v2.0.a1
pyrus_communis	pycom04g18230 pycom12g20550
rosa_chinensis	RchiOBHm_Chr3g0454661
rosa_laevigata	RLG00000025426
rosa_roxburghii	Rroxscaffold_6G00424880
rosa_rugosa	Rorug03G0001000
rosa_samantha	Rh3AG060900 Rh3BG062800 Rh3CG061600 Rh3DG062500
rosa_wichuraiana	Rw3G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 330
AclI	AACGTT	1 cut(s)	335
AclWI	GGATC	4 cut(s)	42, 55, 65, 785
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	2 cut(s)	95, 649
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	4 cut(s)	74, 203, 329, 753
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	105, 192, 340
AjnI	CCWGG	1 cut(s)	73
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	3 cut(s)	413, 589, 689
AluI	AGCT	3 cut(s)	413, 589, 689
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	46, 584, 602
AlwI	GGATC	4 cut(s)	42, 55, 65, 785
ApeKI	GCWGC	3 cut(s)	59, 410, 413
ApoI	RAATTY	1 cut(s)	92
AseI	ATTAAT	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	10, 775
AsuHPI	GGTGA	4 cut(s)	71, 76, 761, 820
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	654
BamHI	GGATCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	46, 400, 422
BccI	CCATC	5 cut(s)	133, 425, 580, 662, 663
BciT130I	CCWGG	1 cut(s)	75
BcnI	CCSGG	2 cut(s)	10, 775
BcoDI	GTCTC	3 cut(s)	46, 584, 602
BfaI	CTAG	2 cut(s)	150, 296
BisI	GCNGC	3 cut(s)	60, 411, 414
BlsI	GCNGC	3 cut(s)	61, 412, 415
Bme1390I	CCNGG	3 cut(s)	10, 75, 775
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	49, 66
BmrFI	CCNGG	3 cut(s)	10, 75, 775
BmsI	GCATC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	96
BpuMI	CCSGG	2 cut(s)	10, 775
BsaI	GGTCTC	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 203, 329, 753
Bse118I	RCCGGY	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	4 cut(s)	74, 203, 329, 753
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	3 cut(s)	57, 120, 579
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	3 cut(s)	46, 400, 422
BseYI	CCCAGC	2 cut(s)	219, 689
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	9, 747, 774
BslI	CCNNNNNNNGG	4 cut(s)	74, 203, 329, 753
BsmAI	GTCTC	3 cut(s)	46, 584, 602
BsmBI	CGTCTC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	160, 654, 733
Bsp143I	GATC	4 cut(s)	47, 70, 450, 777
BspACI	CCGC	2 cut(s)	62, 330
BspCNI	CTCAG	3 cut(s)	56, 121, 578
BspLI	GGNNCC	2 cut(s)	49, 66
BspPI	GGATC	4 cut(s)	42, 55, 65, 785
BspT104I	TTCGAA	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	746
BssMI	GATC	4 cut(s)	47, 70, 450, 777
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	88, 543, 838
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	160, 682
BstDEI	CTNAG	3 cut(s)	43, 129, 565
BstEII	GGTNACC	1 cut(s)	77
BstKTI	GATC	4 cut(s)	50, 73, 453, 780
BstMAI	GTCTC	3 cut(s)	46, 584, 602
BstMBI	GATC	4 cut(s)	47, 70, 450, 777
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 686
BstNI	CCWGG	1 cut(s)	75
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	8, 73, 773
BstSLI	GKGCMC	1 cut(s)	654
BstV1I	GCAGC	3 cut(s)	46, 400, 422
BstX2I	RGATCY	3 cut(s)	47, 70, 777
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	3 cut(s)	47, 70, 777
Cac8I	GCNNGC	2 cut(s)	160, 682
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	539
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviJI	RGCY	9 cut(s)	235, 360, 413, 516, 589, 606, 689, 731, 797
CviKI_1	RGCY	9 cut(s)	235, 360, 413, 516, 589, 606, 689, 731, 797
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	3 cut(s)	43, 129, 565
DpnI	GATC	4 cut(s)	49, 72, 452, 779
DpnII	GATC	4 cut(s)	47, 70, 450, 777
Eco24I	GRGCYC	1 cut(s)	733
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	95, 649
Eco91I	GGTNACC	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	46
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	60, 411, 414
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	3 cut(s)	60, 411, 414
FspBI	CTAG	2 cut(s)	150, 296
GluI	GCNGC	3 cut(s)	60, 411, 414
GsaI	CCCAGC	2 cut(s)	223, 693
HapII	CCGG	3 cut(s)	9, 747, 774
HincII	GTYRAC	2 cut(s)	280, 721
HindII	GTYRAC	2 cut(s)	280, 721
HinfI	GANTC	3 cut(s)	101, 215, 311
HpaII	CCGG	3 cut(s)	9, 747, 774
HphI	GGTGA	4 cut(s)	71, 76, 761, 820
Hpy166II	GTNNAC	3 cut(s)	280, 721, 828
Hpy188I	TCNGA	5 cut(s)	114, 130, 211, 289, 668
Hpy188III	TCNNGA	8 cut(s)	45, 68, 170, 296, 382, 454, 643, 763
Hpy8I	GTNNAC	3 cut(s)	280, 721, 828
HpyAV	CCTTC	3 cut(s)	119, 329, 734
HpyCH4III	ACNGT	3 cut(s)	88, 543, 838
HpyCH4IV	ACGT	3 cut(s)	39, 185, 335
HpyCH4V	TGCA	5 cut(s)	390, 490, 680, 716, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 686
HpyF3I	CTNAG	3 cut(s)	43, 129, 565
HpySE526I	ACGT	3 cut(s)	39, 185, 335
Kzo9I	GATC	4 cut(s)	47, 70, 450, 777
Lsp1109I	GCAGC	3 cut(s)	46, 400, 422
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	150, 296
MaeII	ACGT	3 cut(s)	39, 185, 335
MaeIII	GTNAC	3 cut(s)	77, 430, 520
MalI	GATC	4 cut(s)	49, 72, 452, 779
MboI	GATC	4 cut(s)	47, 70, 450, 777
MboII	GAAGA	4 cut(s)	110, 154, 246, 655
MflI	RGATCY	3 cut(s)	47, 70, 777
MhlI	GDGCHC	3 cut(s)	160, 654, 733
MluCI	AATT	2 cut(s)	92, 549
MnlI	CCTC	8 cut(s)	92, 124, 132, 174, 177, 294, 543, 650
MseI	TTAA	2 cut(s)	306, 480
MslI	CAYNNNNRTG	2 cut(s)	428, 482
MspA1I	CMGCKG	3 cut(s)	330, 413, 589
MspI	CCGG	3 cut(s)	9, 747, 774
MspR9I	CCNGG	3 cut(s)	10, 75, 775
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	155, 686
NciI	CCSGG	2 cut(s)	10, 775
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	4 cut(s)	47, 70, 450, 777
NlaIV	GGNNCC	2 cut(s)	49, 66
NmuCI	GTSAC	2 cut(s)	77, 430
NspV	TTCGAA	1 cut(s)	96
OliI	CACNNNNGTG	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	101, 215, 311
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	61, 412, 415
PshBI	ATTAAT	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	73
PspEI	GGTNACC	1 cut(s)	77
PspFI	CCCAGC	2 cut(s)	219, 689
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	49, 66
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	3 cut(s)	47, 70, 777
PvuII	CAGCTG	2 cut(s)	413, 589
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	2 cut(s)	428, 482
SaqAI	TTAA	2 cut(s)	306, 480
SatI	GCNGC	3 cut(s)	60, 411, 414
Sau3AI	GATC	4 cut(s)	47, 70, 450, 777
Sau96I	GGNCC	1 cut(s)	374
ScrFI	CCNGG	3 cut(s)	10, 75, 775
SduI	GDGCHC	3 cut(s)	160, 654, 733
SfaNI	GCATC	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	428, 482
Sse9I	AATT	2 cut(s)	92, 549
SsiI	CCGC	2 cut(s)	62, 330
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	2 cut(s)	150, 296
StyD4I	CCNGG	3 cut(s)	8, 73, 773
TaaI	ACNGT	3 cut(s)	88, 543, 838
TaiI	ACGT	3 cut(s)	42, 188, 338
TaqI	TCGA	4 cut(s)	96, 644, 657, 727
TasI	AATT	2 cut(s)	92, 549
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	3 cut(s)	101, 215, 311
Tru1I	TTAA	2 cut(s)	306, 480
Tru9I	TTAA	2 cut(s)	306, 480
TseFI	GTSAC	2 cut(s)	77, 430
TseI	GCWGC	3 cut(s)	59, 410, 413
Tsp45I	GTSAC	2 cut(s)	77, 430
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	2 cut(s)	150, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.