AT5G27490

Integral membrane Yip1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010775
Physical Location & Seq
Reverse (-)
9702835 .. 9704743
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27490.1

Sequence Viewer

Length: 849 bp
ATGATGATGTCCGGTGGAAGCTACACGAACATCGATCACCAGAAAGTTTCTGGATCTGTACCCGCTGTTCCAGATCCTGGACATGTCACCGTCAAATTCGCAGACTCAAATCTACAAACGTTTCCTCCATCTGCTACTCAGGGAAAGATTTCTGGTGGTACTAATCCTCCTCGAGATGCTGACGATACATTTTCGAGGCCTGTGAATGGTACTACAGATGAACCTCAGTCTAGTGGTTGGCTTCATAGATTCACTGTTGGTGCTTACAAGCCTTACTTTGATGTGGACACTTCAGATGTCGTAGAGAGACTCAAAGAATCGCTCTTTCCGTTTAGAGGAACATTTACGGAAAAGACAGCCAACAACCCTGATTTGTACGGGCCATTCTGGATATGCACAACATTGATCTTTGTAGCAGCATCCATAGGAACATTTGTTACATACATAGCACACAAATTGAAGAAACAGGAATGGAACTACGATATTAATCTGGTGACTTGGTCTGCAGGAGTTTTCTACGGTTATGTAACTATTGTCCCTCTCGCATTATACGTTGTTCTCAAGTACTTCTCTGCACCATCAGGCTTAGTCCAACTCTTCTGTCTATACGGATATTCCCTATTCGTCTTCATCCCTGCATTGTGTCTCTCTGTTGTGCCATTAGAGATCTTCAGATGGGTTATTGCGGGTTTAGCTGGATTCATGTCTGCTACATTTGTAGCATTGAATCTCAAAGCACATATTAACTCTGCAGGAGAGAGATGGTTCTTGATTGTGGTCAGCATATTTCTTCTACAGCTCGCTCTCTCAGTAGTGCTGAAGCTATATCTGTTCACTGTCACCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

282

Amino Acids

31.16

Weight (kDa)

6.95

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 112 - 272 2.8e-17 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AciI CCGC 2 cut(s) 63, 686
AclI AACGTT 1 cut(s) 119
AclWI GGATC 2 cut(s) 61, 68
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 3 cut(s) 276, 655, 839
AfaI GTAC 5 cut(s) 60, 160, 211, 377, 566
AfiI CCNNNNNNNGG 3 cut(s) 77, 206, 335
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 2 cut(s) 460, 727
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 4 cut(s) 21, 695, 799, 823
AluI AGCT 4 cut(s) 21, 695, 799, 823
Alw26I GTCTC 2 cut(s) 301, 650
AlwI GGATC 2 cut(s) 61, 68
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 2 cut(s) 197, 380
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 95
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 4 cut(s) 29, 79, 505, 832
AvaI CYCGRG 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 619
BbvI GCAGC 1 cut(s) 428
BccI CCATC 4 cut(s) 136, 586, 669, 756
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 301, 650
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 4 cut(s) 213, 504, 750, 794
BglII AGATCT 1 cut(s) 666
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 166, 428
BpiI GAAGAC 1 cut(s) 619
BpuEI CTTGAG 1 cut(s) 545
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 206, 335
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 78
BseCI ATCGAT 1 cut(s) 33
BseGI GGATG 2 cut(s) 419, 630
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 3 cut(s) 77, 206, 335
BseMII CTCAG 3 cut(s) 152, 239, 822
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 2 cut(s) 199, 382
BshVI ATCGAT 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 3 cut(s) 77, 206, 335
BsmAI GTCTC 2 cut(s) 301, 650
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 2 cut(s) 199, 382
BsoBI CYCGRG 1 cut(s) 171
Bsp143I GATC 5 cut(s) 34, 53, 73, 405, 666
BspACI CCGC 2 cut(s) 63, 686
BspANI GGCC 2 cut(s) 199, 382
BspCNI CTCAG 3 cut(s) 151, 238, 821
BspDI ATCGAT 1 cut(s) 33
BspMAI CTGCAG 2 cut(s) 508, 754
BspPI GGATC 2 cut(s) 61, 68
BssMI GATC 5 cut(s) 34, 53, 73, 405, 666
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 5 cut(s) 91, 256, 521, 838, 844
Bst6I CTCTTC 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 801
BstDEI CTNAG 4 cut(s) 138, 225, 586, 808
BstF5I GGATG 2 cut(s) 419, 630
BstKTI GATC 5 cut(s) 37, 56, 76, 408, 669
BstMAI GTCTC 2 cut(s) 301, 650
BstMBI GATC 5 cut(s) 34, 53, 73, 405, 666
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 4 cut(s) 213, 504, 750, 794
BstV1I GCAGC 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 619
BstX2I RGATCY 3 cut(s) 53, 73, 666
BstYI RGATCY 3 cut(s) 53, 73, 666
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 2 cut(s) 199, 382
BsuTUI ATCGAT 1 cut(s) 33
BtsCI GGATG 2 cut(s) 419, 630
BtsIMutI CAGTG 2 cut(s) 252, 834
Cac8I GCNNGC 1 cut(s) 801
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 5 cut(s) 59, 159, 210, 376, 565
CviAII CATG 2 cut(s) 83, 703
CviQI GTAC 5 cut(s) 59, 159, 210, 376, 565
DdeI CTNAG 4 cut(s) 138, 225, 586, 808
DpnI GATC 5 cut(s) 36, 55, 75, 407, 668
DpnII GATC 5 cut(s) 34, 53, 73, 405, 666
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
Eco147I AGGCCT 1 cut(s) 199
Eco57I CTGAAG 3 cut(s) 276, 655, 839
Eco88I CYCGRG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 86, 706
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 521
FatI CATG 2 cut(s) 82, 702
FauI CCCGC 2 cut(s) 70, 679
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 2 cut(s) 406, 617
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 231
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 199, 382
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 86, 706
HinfI GANTC 6 cut(s) 104, 249, 309, 317, 699, 727
HpaII CCGG 1 cut(s) 12
HphI GGTGA 4 cut(s) 29, 79, 505, 832
Hpy166II GTNNAC 2 cut(s) 286, 834
Hpy188I TCNGA 2 cut(s) 295, 674
Hpy188III TCNNGA 5 cut(s) 51, 71, 173, 388, 769
Hpy8I GTNNAC 2 cut(s) 286, 834
HpyCH4III ACNGT 5 cut(s) 91, 256, 521, 838, 844
HpyCH4IV ACGT 2 cut(s) 119, 552
HpyCH4V TGCA 5 cut(s) 396, 506, 575, 638, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 4 cut(s) 138, 225, 586, 808
HpySE526I ACGT 2 cut(s) 119, 552
Hsp92II CATG 2 cut(s) 86, 706
Kzo9I GATC 5 cut(s) 34, 53, 73, 405, 666
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 2 cut(s) 166, 428
MaeI CTAG 1 cut(s) 231
MaeII ACGT 2 cut(s) 119, 552
MaeIII GTNAC 5 cut(s) 85, 436, 493, 526, 838
MalI GATC 5 cut(s) 36, 55, 75, 407, 668
MboI GATC 5 cut(s) 34, 53, 73, 405, 666
MboII GAAGA 5 cut(s) 472, 589, 619, 661, 782
MflI RGATCY 3 cut(s) 53, 73, 666
MluCI AATT 2 cut(s) 95, 455
MlyI GAGTC 2 cut(s) 98, 303
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 7 cut(s) 135, 177, 180, 189, 234, 329, 549
MroXI GAANNNNTTC 1 cut(s) 148
MseI TTAA 2 cut(s) 486, 744
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 692
NdeII GATC 5 cut(s) 34, 53, 73, 405, 666
NlaIII CATG 2 cut(s) 86, 706
NmuCI GTSAC 3 cut(s) 85, 493, 838
NspI RCATGY 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 171
PceI AGGCCT 1 cut(s) 199
PciI ACATGT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 2 cut(s) 326, 549
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 249, 317, 699, 727
PflFI GACNNNGTC 1 cut(s) 499
PflMI CCANNNNNTGG 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 2 cut(s) 98, 303
PpsI GAGTC 2 cut(s) 98, 303
PscI ACATGT 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 486
Psp1406I AACGTT 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 1 cut(s) 380
PsrI GAACNNNNNNTAC 4 cut(s) 51, 83, 421, 453
PstI CTGCAG 2 cut(s) 508, 754
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 3 cut(s) 53, 73, 666
PsyI GACNNNGTC 1 cut(s) 499
RsaI GTAC 5 cut(s) 60, 160, 211, 377, 566
RsaNI GTAC 5 cut(s) 59, 159, 210, 376, 565
SaqAI TTAA 2 cut(s) 486, 744
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 5 cut(s) 34, 53, 73, 405, 666
Sau96I GGNCC 1 cut(s) 380
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 98, 303
ScrFI CCNGG 1 cut(s) 78
SetI ASST 7 cut(s) 23, 122, 226, 555, 697, 801, 825
SfaNI GCATC 2 cut(s) 166, 428
SfcI CTRYAG 4 cut(s) 213, 504, 750, 794
Sfr274I CTCGAG 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 171, 560
SmoI CTYRAG 2 cut(s) 171, 560
Sse9I AATT 2 cut(s) 95, 455
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 2 cut(s) 63, 686
SspMI CTAG 1 cut(s) 231
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 5 cut(s) 91, 256, 521, 838, 844
TaiI ACGT 2 cut(s) 122, 555
TaqI TCGA 3 cut(s) 33, 172, 194
TasI AATT 2 cut(s) 95, 455
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 4 cut(s) 249, 317, 699, 727
Tru1I TTAA 2 cut(s) 486, 744
Tru9I TTAA 2 cut(s) 486, 744
TscAI CASTG 2 cut(s) 259, 841
TseFI GTSAC 3 cut(s) 85, 493, 838
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 3 cut(s) 85, 493, 838
TspDTI ATGAA 4 cut(s) 233, 234, 619, 691
TspGWI ACGGA 3 cut(s) 318, 362, 624
TspRI CASTG 2 cut(s) 259, 841
Tth111I GACNNNGTC 1 cut(s) 499
Van91I CCANNNNNTGG 1 cut(s) 77
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XhoI CTCGAG 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 148
XspI CTAG 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.