Rroxscaffold_6G00424880

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010775
Physical Location & Seq
Forward (+)
45993142 .. 45995886
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424880.1

Sequence Viewer

Length: 843 bp
ATGATGTCCGGCAATTATACCAGCATTGATAACCAAAGCGTCTCGGGATCTGTTCCTGCTGCAGTTCCAGATCCAGGCCACCTCACCGTCAAATTCCAAGATTCACACCTTCAGACATTTCCTCCATCTGAGGCACAAGGGAAGATCTCTAGTGGCGCTCGCCCTCCTCGTGATGCAGATGACACATTTTCAAAACCTATATCTGGTTCTGATGAACCCCAGCAGAGTGGTTGGCTACATACTTTCAGTGTATCCTCTTACAAGGCATATTTTGACGTTGACACTTCAGATGTTCTAGAGAGGATTAAAGACTCACTCCTTCCATATAGTGGAGCTTTCAATGAAAAAACAACTAACAATCCAGATTTATATGGACCTTTCTGGATATGCACCACCCTAATATTTGTCGCAGCTGCCATTGGCACCTTCGTGACATATGTAGCACACAAGGTCAAGAGTGAAGAGTGGGCATATGACATTAATGTAGTGCAATGGTCTGCTGGATTGTTCTATGGTTACGTCACTGTTGTTCCTCTTGTGCTGTATGTAATCCTTAAATACTTCTCGGCACCAGCAGGTCTCGTTCAGCTGTTTTGTCTGTATGGCTATTCCCTGTTTGTCTTTATACCAGCTTTGTGTCTCTCCGTTGTGCCCTTGGAAATTTTCCGATGGGTAATTGCAGGCGTGGCTGGGATCATGTCTGCTACTTTTGTGGCCATAAACCTTCGCGCCCACATTGTTTCAGCAGGTGAAAGCTGGTTCTTCATTGTGGCTGCGATCTTTCTGTTGCAGTTGGCTCTGGCTGTCGTGCTAAAACTCTATTTGTTCACCGTCACAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

280

Amino Acids

30.69

Weight (kDa)

5.27

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 109 - 270 2.3e-16 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 737
Acc36I ACCTGC 2 cut(s) 566, 737
AccB1I GGYRCC 2 cut(s) 422, 568
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 1 cut(s) 729
AclWI GGATC 3 cut(s) 55, 65, 701
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 2 cut(s) 92, 660
AcuI CTGAAG 2 cut(s) 95, 270
AfiI CCNNNNNNNGG 3 cut(s) 74, 203, 329
AgsI TTSAA 2 cut(s) 192, 340
AjnI CCWGG 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 5 cut(s) 335, 413, 589, 632, 756
AluI AGCT 5 cut(s) 335, 413, 589, 632, 756
Alw26I GTCTC 3 cut(s) 46, 584, 644
AlwI GGATC 3 cut(s) 55, 65, 701
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 2 cut(s) 76, 714
ApeKI GCWGC 4 cut(s) 59, 410, 413, 773
ApoI RAATTY 2 cut(s) 92, 660
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 2 cut(s) 158, 731
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 3 cut(s) 76, 761, 820
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 654
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 2 cut(s) 422, 568
BauI CACGAG 1 cut(s) 168
BbvI GCAGC 4 cut(s) 46, 400, 422, 760
BccI CCATC 2 cut(s) 133, 663
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 46, 584, 644
BfaI CTAG 3 cut(s) 150, 296, 841
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 2 cut(s) 566, 737
BfuI GTATCC 1 cut(s) 262
BglII AGATCT 1 cut(s) 144
BisI GCNGC 4 cut(s) 60, 411, 414, 774
BlsI GCNGC 4 cut(s) 61, 412, 415, 775
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 424, 570
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 654
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 203, 329
Bse3DI GCAATG 1 cut(s) 497
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 654
BseLI CCNNNNNNNGG 3 cut(s) 74, 203, 329
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 4 cut(s) 46, 400, 422, 760
BseYI CCCAGC 2 cut(s) 219, 689
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 2 cut(s) 78, 716
BshNI GGYRCC 2 cut(s) 422, 568
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 74, 203, 329
BsmAI GTCTC 3 cut(s) 46, 584, 644
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 2 cut(s) 78, 716
Bso31I GGTCTC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 5 cut(s) 47, 70, 144, 693, 777
BspANI GGCC 2 cut(s) 78, 716
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 424, 570
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 2 cut(s) 566, 737
BspPI GGATC 3 cut(s) 55, 65, 701
BspT107I GGYRCC 2 cut(s) 422, 568
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 5 cut(s) 47, 70, 144, 693, 777
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 88, 526, 832, 838
Bst6I CTCTTC 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 160, 682
BstDEI CTNAG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 729
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 2 cut(s) 158, 731
BstKTI GATC 5 cut(s) 50, 73, 147, 696, 780
BstMAI GTCTC 3 cut(s) 46, 584, 644
BstMBI GATC 5 cut(s) 47, 70, 144, 693, 777
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 654
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 4 cut(s) 46, 400, 422, 760
BstX2I RGATCY 3 cut(s) 47, 70, 144
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 47, 70, 144
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 2 cut(s) 78, 716
BtsIMutI CAGTG 2 cut(s) 253, 522
BveI ACCTGC 2 cut(s) 566, 737
Cac8I GCNNGC 2 cut(s) 160, 682
CfoI GCGC 2 cut(s) 158, 731
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 1 cut(s) 28
CviAII CATG 1 cut(s) 697
DdeI CTNAG 1 cut(s) 129
DpnI GATC 5 cut(s) 49, 72, 146, 695, 779
DpnII GATC 5 cut(s) 47, 70, 144, 693, 777
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 95, 270
Eco88I CYCGRG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 654
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 700
FatI CATG 1 cut(s) 696
FauNDI CATATG 2 cut(s) 436, 472
Fnu4HI GCNGC 4 cut(s) 60, 411, 414, 774
Fsp4HI GCNGC 4 cut(s) 60, 411, 414, 774
FspBI CTAG 3 cut(s) 150, 296, 841
GlaI GCGC 2 cut(s) 157, 730
GluI GCNGC 4 cut(s) 60, 411, 414, 774
GsaI CCCAGC 2 cut(s) 223, 693
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 78, 716
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 28
HhaI GCGC 2 cut(s) 158, 731
Hin1II CATG 1 cut(s) 700
Hin6I GCGC 2 cut(s) 156, 729
HinP1I GCGC 2 cut(s) 156, 729
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 101, 311
HpaII CCGG 1 cut(s) 9
HphI GGTGA 3 cut(s) 76, 761, 820
Hpy166II GTNNAC 2 cut(s) 280, 828
Hpy188I TCNGA 5 cut(s) 114, 130, 211, 289, 668
Hpy188III TCNNGA 8 cut(s) 45, 68, 170, 296, 362, 382, 430, 454
Hpy8I GTNNAC 2 cut(s) 280, 828
HpyAV CCTTC 4 cut(s) 119, 329, 436, 734
HpyCH4III ACNGT 4 cut(s) 88, 526, 832, 838
HpyCH4IV ACGT 2 cut(s) 276, 519
HpyCH4V TGCA 6 cut(s) 62, 176, 390, 490, 680, 790
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 276, 519
Hsp92II CATG 1 cut(s) 700
HspAI GCGC 2 cut(s) 156, 729
Kzo9I GATC 5 cut(s) 47, 70, 144, 693, 777
LmnI GCTCC 1 cut(s) 332
Lsp1109I GCAGC 4 cut(s) 46, 400, 422, 760
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 150, 296, 841
MaeII ACGT 2 cut(s) 276, 519
MaeIII GTNAC 4 cut(s) 430, 515, 520, 832
MalI GATC 5 cut(s) 49, 72, 146, 695, 779
MboI GATC 5 cut(s) 47, 70, 144, 693, 777
MboII GAAGA 3 cut(s) 154, 473, 754
MflI RGATCY 3 cut(s) 47, 70, 144
MhlI GDGCHC 1 cut(s) 654
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 4 cut(s) 13, 92, 660, 675
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 8 cut(s) 92, 124, 132, 174, 177, 265, 294, 543
Mox20I TGGCCA 1 cut(s) 716
MscI TGGCCA 1 cut(s) 716
MseI TTAA 3 cut(s) 306, 480, 555
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 413, 589
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 1 cut(s) 686
NdeI CATATG 2 cut(s) 436, 472
NdeII GATC 5 cut(s) 47, 70, 144, 693, 777
NlaIII CATG 1 cut(s) 700
NlaIV GGNNCC 2 cut(s) 424, 570
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 3 cut(s) 430, 520, 832
OliI CACNNNNGTG 1 cut(s) 428
PaqCI CACCTGC 1 cut(s) 737
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 4 cut(s) 61, 412, 415, 775
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 2 cut(s) 219, 689
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 424, 570
PspPI GGNCC 1 cut(s) 374
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 3 cut(s) 47, 70, 144
PvuII CAGCTG 2 cut(s) 413, 589
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 3 cut(s) 306, 480, 555
SatI GCNGC 4 cut(s) 60, 411, 414, 774
Sau3AI GATC 5 cut(s) 47, 70, 144, 693, 777
Sau96I GGNCC 1 cut(s) 374
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 4 cut(s) 13, 92, 660, 675
SspI AATATT 1 cut(s) 402
SspMI CTAG 3 cut(s) 150, 296, 841
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 4 cut(s) 88, 526, 832, 838
TaiI ACGT 2 cut(s) 279, 522
TasI AATT 4 cut(s) 13, 92, 660, 675
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 306, 480, 555
Tru9I TTAA 3 cut(s) 306, 480, 555
TscAI CASTG 2 cut(s) 253, 529
TseFI GTSAC 3 cut(s) 430, 520, 832
TseI GCWGC 4 cut(s) 59, 410, 413, 773
Tsp45I GTSAC 3 cut(s) 430, 520, 832
TspDTI ATGAA 3 cut(s) 228, 357, 754
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 2 cut(s) 253, 529
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 92, 660
XbaI TCTAGA 1 cut(s) 295
XspI CTAG 3 cut(s) 150, 296, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.