FvH4_6g05750

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010775
Physical Location & Seq
Reverse (-)
3270714 .. 3273724
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05750.t2

Sequence Viewer

Length: 843 bp
ATGATGTCCGGCAATTACACCAGCATTGATAACCAAAGCGTCTCTGGATCCGTTCCTGCTGCGGTTCCAGATCCAGGTCACCACACCGTCAAATTCGAAGATTCACACCTTCAGACATTTCCTCCATCCGAGGCGCAAGGGAAGATCTCTAGTGGTGCTCGCCCTCCTCGTGATGCAGATGACACATTTTCAAAACCTGTATCTGGTTCCGATGAACCCCAGCAGAGTGGTTGGCTACGTACTTTCAGTGTATCCTCTTACAAAGCATATTTTGACGTTGACACTTCAGATGTTCTAGAGAGGATTAAAGACTCACTCCTTCCATATAGTGGAGCTTTCAATGAAAAAACAACCAACAATCCAGATTTGTATGGACCTTTCTGGATATGCACAACCCTAATATTTGTCGCCGCTGCCATTGGCACCTTCGTGACATATGTAGCACACAAGGTCAAGAGTCAAGAGTGGACATATGACATTAATGTGGTGCAATGGTCTGCTGGATTGTTCTATGGTTATGTGACTGTTGTTCCTCTTCTGCTGTATGTAATCCTTAAATACTTCTCGGCACCAGCAGGTCTCGTCCAGCTGTTTTGTCTGTATGGCTACTCCCTGTTTGTCTTTATACCAGCTTTGTGTCTCTCTGTTGTGCCCTTGGAAATTTTCCGATGGGTAATTGCAGGCGTGGCTGGGATCATGTCTGCTACTTTTGTGGCCATAAACCTTCGCGCCCATATTGTTTCAGCAGGTGAAAGCTGGTTCTTGATTGTGGCTGGGATATTTCTATTGCAGTTGGCTCTATCTGTCGTGCTAAAACTCTATTTGTTCACCGTCACAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

281

Amino Acids

30.73

Weight (kDa)

5.46

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 109 - 213 2.5e-14 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 737
Acc36I ACCTGC 2 cut(s) 566, 737
AccB1I GGYRCC 2 cut(s) 422, 568
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 1 cut(s) 729
AciI CCGC 2 cut(s) 62, 411
AclWI GGATC 4 cut(s) 42, 55, 65, 701
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 2 cut(s) 92, 660
AcuI CTGAAG 2 cut(s) 95, 270
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 3 cut(s) 74, 203, 329
AgsI TTSAA 2 cut(s) 192, 340
AjnI CCWGG 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 4 cut(s) 335, 589, 632, 756
AluI AGCT 4 cut(s) 335, 589, 632, 756
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 3 cut(s) 46, 584, 644
AlwI GGATC 4 cut(s) 42, 55, 65, 701
AoxI GGCC 1 cut(s) 714
ApeKI GCWGC 2 cut(s) 59, 413
ApoI RAATTY 2 cut(s) 92, 660
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 2 cut(s) 136, 731
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 3 cut(s) 71, 761, 820
AsuII TTCGAA 1 cut(s) 96
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 654
BalI TGGCCA 1 cut(s) 716
BamHI GGATCC 1 cut(s) 47
BanI GGYRCC 2 cut(s) 422, 568
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 46, 400
BccI CCATC 2 cut(s) 133, 663
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 46, 584, 644
BfaI CTAG 3 cut(s) 150, 296, 841
BfuAI ACCTGC 2 cut(s) 566, 737
BfuI GTATCC 1 cut(s) 262
BglII AGATCT 1 cut(s) 144
BisI GCNGC 3 cut(s) 60, 411, 414
BlsI GCNGC 3 cut(s) 61, 412, 415
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 5 cut(s) 49, 66, 208, 424, 570
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 129, 654
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 203, 329
Bse3DI GCAATG 1 cut(s) 497
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 129, 654
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 3 cut(s) 74, 203, 329
BseMI GCAATG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 2 cut(s) 46, 400
BseYI CCCAGC 3 cut(s) 219, 689, 773
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 1 cut(s) 716
BshNI GGYRCC 2 cut(s) 422, 568
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 3 cut(s) 74, 203, 329
BsmAI GTCTC 3 cut(s) 46, 584, 644
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 716
Bso31I GGTCTC 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 2 cut(s) 160, 654
Bsp143I GATC 4 cut(s) 47, 70, 144, 693
BspACI CCGC 2 cut(s) 62, 411
BspANI GGCC 1 cut(s) 716
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 5 cut(s) 49, 66, 208, 424, 570
BspMI ACCTGC 2 cut(s) 566, 737
BspPI GGATC 4 cut(s) 42, 55, 65, 701
BspT104I TTCGAA 1 cut(s) 96
BspT107I GGYRCC 2 cut(s) 422, 568
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 129, 654
BssMI GATC 4 cut(s) 47, 70, 144, 693
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 88, 526, 832, 838
Bst6I CTCTTC 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 160, 682
BstEII GGTNACC 1 cut(s) 77
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 729
BstHHI GCGC 2 cut(s) 136, 731
BstKTI GATC 4 cut(s) 50, 73, 147, 696
BstMAI GTCTC 3 cut(s) 46, 584, 644
BstMBI GATC 4 cut(s) 47, 70, 144, 693
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 654
BstSNI TACGTA 1 cut(s) 239
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 46, 400
BstX2I RGATCY 3 cut(s) 47, 70, 144
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 47, 70, 144
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 2 cut(s) 566, 737
Cac8I GCNNGC 2 cut(s) 160, 682
CfoI GCGC 2 cut(s) 136, 731
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 697
CviQI GTAC 1 cut(s) 240
DpnI GATC 4 cut(s) 49, 72, 146, 695
DpnII GATC 4 cut(s) 47, 70, 144, 693
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco105I TACGTA 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 95, 270
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 654
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 700
FatI CATG 1 cut(s) 696
FauNDI CATATG 2 cut(s) 436, 472
Fnu4HI GCNGC 3 cut(s) 60, 411, 414
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 60, 411, 414
FspBI CTAG 3 cut(s) 150, 296, 841
GlaI GCGC 2 cut(s) 135, 730
GluI GCNGC 3 cut(s) 60, 411, 414
GsaI CCCAGC 3 cut(s) 223, 693, 777
HaeIII GGCC 1 cut(s) 716
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 28
HhaI GCGC 2 cut(s) 136, 731
Hin1II CATG 1 cut(s) 700
Hin6I GCGC 2 cut(s) 134, 729
HinP1I GCGC 2 cut(s) 134, 729
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 3 cut(s) 101, 311, 457
HpaII CCGG 1 cut(s) 9
HphI GGTGA 3 cut(s) 71, 761, 820
Hpy166II GTNNAC 3 cut(s) 280, 468, 828
Hpy188I TCNGA 5 cut(s) 114, 130, 211, 289, 668
Hpy8I GTNNAC 3 cut(s) 280, 468, 828
HpyAV CCTTC 4 cut(s) 119, 329, 436, 734
HpyCH4III ACNGT 4 cut(s) 88, 526, 832, 838
HpyCH4IV ACGT 2 cut(s) 238, 276
HpyCH4V TGCA 5 cut(s) 176, 390, 490, 680, 790
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpySE526I ACGT 2 cut(s) 238, 276
Hsp92II CATG 1 cut(s) 700
HspAI GCGC 2 cut(s) 134, 729
Kzo9I GATC 4 cut(s) 47, 70, 144, 693
LmnI GCTCC 1 cut(s) 332
Lsp1109I GCAGC 2 cut(s) 46, 400
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 150, 296, 841
MaeII ACGT 2 cut(s) 238, 276
MaeIII GTNAC 4 cut(s) 77, 430, 520, 832
MalI GATC 4 cut(s) 49, 72, 146, 695
MboI GATC 4 cut(s) 47, 70, 144, 693
MboII GAAGA 3 cut(s) 110, 154, 527
MflI RGATCY 3 cut(s) 47, 70, 144
MhlI GDGCHC 2 cut(s) 160, 654
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 4 cut(s) 13, 92, 660, 675
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 2 cut(s) 305, 466
MnlI CCTC 7 cut(s) 124, 132, 174, 177, 265, 294, 543
Mox20I TGGCCA 1 cut(s) 716
MscI TGGCCA 1 cut(s) 716
MseI TTAA 3 cut(s) 306, 480, 555
MslI CAYNNNNRTG 2 cut(s) 428, 482
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 413, 589
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 1 cut(s) 686
NdeI CATATG 2 cut(s) 436, 472
NdeII GATC 4 cut(s) 47, 70, 144, 693
NlaIII CATG 1 cut(s) 700
NlaIV GGNNCC 5 cut(s) 49, 66, 208, 424, 570
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 4 cut(s) 77, 430, 520, 832
NspV TTCGAA 1 cut(s) 96
OliI CACNNNNGTG 1 cut(s) 428
PaqCI CACCTGC 1 cut(s) 737
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 3 cut(s) 61, 412, 415
PleI GAGTC 2 cut(s) 305, 465
PpsI GAGTC 2 cut(s) 305, 465
Ppu21I YACGTR 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 77
PspFI CCCAGC 3 cut(s) 219, 689, 773
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 5 cut(s) 49, 66, 208, 424, 570
PspPI GGNCC 1 cut(s) 374
PsuI RGATCY 3 cut(s) 47, 70, 144
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 2 cut(s) 428, 482
SaqAI TTAA 3 cut(s) 306, 480, 555
SatI GCNGC 3 cut(s) 60, 411, 414
Sau3AI GATC 4 cut(s) 47, 70, 144, 693
Sau96I GGNCC 1 cut(s) 374
SchI GAGTC 2 cut(s) 305, 466
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 2 cut(s) 160, 654
SfaNI GCATC 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 96
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 2 cut(s) 428, 482
SnaBI TACGTA 1 cut(s) 239
Sse9I AATT 4 cut(s) 13, 92, 660, 675
SsiI CCGC 2 cut(s) 62, 411
SspI AATATT 1 cut(s) 402
SspMI CTAG 3 cut(s) 150, 296, 841
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 4 cut(s) 88, 526, 832, 838
TaiI ACGT 2 cut(s) 241, 279
TaqI TCGA 1 cut(s) 96
TasI AATT 4 cut(s) 13, 92, 660, 675
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 306, 480, 555
Tru9I TTAA 3 cut(s) 306, 480, 555
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 4 cut(s) 77, 430, 520, 832
TseI GCWGC 2 cut(s) 59, 413
Tsp45I GTSAC 4 cut(s) 77, 430, 520, 832
TspDTI ATGAA 2 cut(s) 228, 357
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 92, 660
XbaI TCTAGA 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XspI CTAG 3 cut(s) 150, 296, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.