MD12G1220100.v1.1

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0010775
Physical Location & Seq
Forward (+)
29696823 .. 29699851
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1220100.v1.1.491

Sequence Viewer

Length: 843 bp
ATGATGTCCGGAAATTATACCAGCATTGACAACCAGAACGTCTCGGGATCTGTTCCTGCTGCGGTTCCAGATCCAGGCCACCTCACCGTCAAATTCCAAGATTCAAGCCTTCAGACGTTTCCTCCATCTGGGACGCAAGGGAAGATCGCTGGTGGTGCCCTCCCTCCTCGTGATGCCGATGACACATTTTCTAAACCTGTATCTGGTTCTGATGAACCCCAGCAAGGTGGTTGGCTACGGGTATTCTCTGTAGCTTCTTACAAGCAATACTTTGATGTTGACACTTCCGATGTCCTAGAGAGGATTAAAGATTCACTTCTTCCATTCAGTGGAGCCTTCAATGAGAAAACATCTGACAGCCCAGATTTGTATGGACCTTTCTGGATATGCACTACCCTAATATTTGTAGCAGCTGCAATTGGCACTTTTGTGACATATGTAGCACACAAGGTCAAGAGTAAAGATTGGGAATATGACATTAATGTGGTGCAATGGTCAGCGGGATTGTTCTATGGTTATGTCACTATCGTCCCTCTTGTACTGTATGTAATTCTCAAGTACTTCTCGGCACCATCAGGTCTTGTTCAGCTATTTTGTCTCTATGGTTACTCTCTGTTTGTCTTCATTCCAGCATTGTGCCTCTCAATTGTGCCTCTGGAAATCTTCAGATGGGTAATTGCAGGCATAGCTGGGGTTATGTCCGCCACCTTTGTTGCAGTTAATCTTCGCGCCCACATCGTATCAGCAGGTGAAAGGTGGTTCTTGATTGTGGCCGCGATCTTTCTGTTGCAGTTGGCTCTGTCCCTCGTCCTAAAACTCTACTTGTTTACCGTCACGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

281

Amino Acids

30.63

Weight (kDa)

5.3

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 111 - 269 2.6e-16 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 737
Acc36I ACCTGC 1 cut(s) 737
AccB1I GGYRCC 2 cut(s) 155, 568
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 2 cut(s) 729, 776
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 4 cut(s) 62, 500, 702, 774
AclWI GGATC 2 cut(s) 55, 65
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 95, 649
AfaI GTAC 2 cut(s) 540, 560
AfiI CCNNNNNNNGG 5 cut(s) 74, 128, 203, 224, 329
AgsI TTSAA 2 cut(s) 105, 340
AjnI CCWGG 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 4 cut(s) 254, 413, 589, 689
AluI AGCT 4 cut(s) 254, 413, 589, 689
Alw26I GTCTC 2 cut(s) 46, 602
AlwI GGATC 2 cut(s) 55, 65
Ama87I CYCGRG 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 2 cut(s) 76, 771
ApeKI GCWGC 3 cut(s) 59, 410, 413
ApoI RAATTY 1 cut(s) 92
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 731
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 76, 761
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 2 cut(s) 155, 568
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 613
BbvI GCAGC 3 cut(s) 46, 400, 422
BccI CCATC 3 cut(s) 133, 580, 663
BciT130I CCWGG 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 46, 602
BfaI CTAG 2 cut(s) 296, 841
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 737
BisI GCNGC 4 cut(s) 60, 411, 414, 774
BlsI GCNGC 4 cut(s) 61, 412, 415, 775
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 4 cut(s) 66, 157, 334, 570
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 539
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 128, 203, 224, 329
Bse3DI GCAATG 1 cut(s) 497
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 1 cut(s) 75
BseLI CCNNNNNNNGG 5 cut(s) 74, 128, 203, 224, 329
BseMI GCAATG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 3 cut(s) 46, 400, 422
BseYI CCCAGC 2 cut(s) 219, 689
Bsh1236I CGCG 2 cut(s) 729, 776
BshFI GGCC 2 cut(s) 78, 773
BshNI GGYRCC 2 cut(s) 155, 568
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 3 cut(s) 145, 515, 787
BslI CCNNNNNNNGG 5 cut(s) 74, 128, 203, 224, 329
BsmAI GTCTC 2 cut(s) 46, 602
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 3 cut(s) 145, 515, 787
BsnI GGCC 2 cut(s) 78, 773
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 4 cut(s) 47, 70, 144, 777
BspACI CCGC 4 cut(s) 62, 500, 702, 774
BspANI GGCC 2 cut(s) 78, 773
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 2 cut(s) 729, 776
BspLI GGNNCC 4 cut(s) 66, 157, 334, 570
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 2 cut(s) 55, 65
BspT107I GGYRCC 2 cut(s) 155, 568
BsrDI GCAATG 1 cut(s) 497
BssMI GATC 4 cut(s) 47, 70, 144, 777
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 88, 543, 832, 838
BstC8I GCNNGC 1 cut(s) 682
BstFNI CGCG 2 cut(s) 729, 776
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 4 cut(s) 50, 73, 147, 780
BstMAI GTCTC 2 cut(s) 46, 602
BstMBI GATC 4 cut(s) 47, 70, 144, 777
BstMWI GCNNNNNNNGC 2 cut(s) 155, 686
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 2 cut(s) 729, 776
BstV1I GCAGC 3 cut(s) 46, 400, 422
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 2 cut(s) 47, 70
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 2 cut(s) 47, 70
BsuRI GGCC 2 cut(s) 78, 773
BtsIMutI CAGTG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 1 cut(s) 682
CfoI GCGC 1 cut(s) 731
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 539, 559
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CviQI GTAC 2 cut(s) 539, 559
DpnI GATC 4 cut(s) 49, 72, 146, 779
DpnII GATC 4 cut(s) 47, 70, 144, 777
EaeI YGGCCR 1 cut(s) 771
EciI GGCGGA 1 cut(s) 691
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 95, 649
Eco88I CYCGRG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 46
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 300, 332
FaqI GGGAC 3 cut(s) 145, 515, 787
FauI CCCGC 1 cut(s) 493
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 4 cut(s) 60, 411, 414, 774
Fsp4HI GCNGC 4 cut(s) 60, 411, 414, 774
FspBI CTAG 2 cut(s) 296, 841
GlaI GCGC 1 cut(s) 730
GluI GCNGC 4 cut(s) 60, 411, 414, 774
GsaI CCCAGC 2 cut(s) 223, 693
HaeIII GGCC 2 cut(s) 78, 773
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 731
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 101, 311
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 76, 761
Hpy166II GTNNAC 2 cut(s) 280, 828
Hpy188I TCNGA 5 cut(s) 114, 211, 289, 355, 668
Hpy188III TCNNGA 8 cut(s) 9, 45, 68, 170, 382, 454, 656, 763
Hpy8I GTNNAC 2 cut(s) 280, 828
HpyAV CCTTC 2 cut(s) 119, 346
HpyCH4III ACNGT 4 cut(s) 88, 543, 832, 838
HpyCH4IV ACGT 2 cut(s) 39, 116
HpyCH4V TGCA 6 cut(s) 390, 416, 490, 680, 716, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 686
HpySE526I ACGT 2 cut(s) 39, 116
HspAI GCGC 1 cut(s) 729
Kpn2I TCCGGA 1 cut(s) 8
Kzo9I GATC 4 cut(s) 47, 70, 144, 777
LmnI GCTCC 1 cut(s) 332
Lsp1109I GCAGC 3 cut(s) 46, 400, 422
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 296, 841
MaeII ACGT 2 cut(s) 39, 116
MaeIII GTNAC 4 cut(s) 430, 520, 605, 832
MalI GATC 4 cut(s) 49, 72, 146, 779
MboI GATC 4 cut(s) 47, 70, 144, 777
MboII GAAGA 5 cut(s) 154, 311, 613, 655, 716
MfeI CAATTG 2 cut(s) 417, 645
MflI RGATCY 2 cut(s) 47, 70
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 6 cut(s) 13, 92, 417, 549, 645, 675
MroI TCCGGA 1 cut(s) 8
MseI TTAA 3 cut(s) 306, 480, 720
MslI CAYNNNNRTG 2 cut(s) 428, 482
MspA1I CMGCKG 2 cut(s) 413, 500
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 2 cut(s) 417, 645
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 2 cut(s) 729, 776
MwoI GCNNNNNNNGC 2 cut(s) 155, 686
NdeI CATATG 1 cut(s) 436
NdeII GATC 4 cut(s) 47, 70, 144, 777
NlaIV GGNNCC 4 cut(s) 66, 157, 334, 570
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 3 cut(s) 430, 520, 832
OliI CACNNNNGTG 1 cut(s) 428
PaqCI CACCTGC 1 cut(s) 737
PfeI GAWTC 2 cut(s) 101, 311
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 4 cut(s) 61, 412, 415, 775
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 2 cut(s) 219, 689
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 66, 157, 334, 570
PspPI GGNCC 1 cut(s) 374
PsuI RGATCY 2 cut(s) 47, 70
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 2 cut(s) 540, 560
RsaNI GTAC 2 cut(s) 539, 559
RseI CAYNNNNRTG 2 cut(s) 428, 482
SaqAI TTAA 3 cut(s) 306, 480, 720
SatI GCNGC 4 cut(s) 60, 411, 414, 774
Sau3AI GATC 4 cut(s) 47, 70, 144, 777
Sau96I GGNCC 1 cut(s) 374
ScaI AGTACT 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 2 cut(s) 428, 482
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 6 cut(s) 13, 92, 417, 549, 645, 675
SsiI CCGC 4 cut(s) 62, 500, 702, 774
SspI AATATT 1 cut(s) 402
SspMI CTAG 2 cut(s) 296, 841
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 4 cut(s) 88, 543, 832, 838
TaiI ACGT 2 cut(s) 42, 119
TasI AATT 6 cut(s) 13, 92, 417, 549, 645, 675
TatI WGTACW 2 cut(s) 538, 558
TauI GCSGC 1 cut(s) 776
TfiI GAWTC 2 cut(s) 101, 311
Tru1I TTAA 3 cut(s) 306, 480, 720
Tru9I TTAA 3 cut(s) 306, 480, 720
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 3 cut(s) 430, 520, 832
TseI GCWGC 3 cut(s) 59, 410, 413
Tsp45I GTSAC 3 cut(s) 430, 520, 832
TspDTI ATGAA 2 cut(s) 228, 613
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 92
XspI CTAG 2 cut(s) 296, 841
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.