Rh3AG060900

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010775
Physical Location & Seq
Reverse (-)
4205977 .. 4209127
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG060900.1

Sequence Viewer

Length: 822 bp
ATGATGTCCGGCAATTATACCAGCATTGATAACCAAAGCGTCTCGGGATCTGTTCCTGCTGCGGTTCCAGATCCAGGCCACCTCACCGTCAAATTCCAAGATTCACACCTTCAGACATTTCCTCCATCTGAGGCACAAGGGAAGATCTCTAGTGGCGCTCGCCCTCCTCGCGATGCAGATGACACATTTTCAAAACCTGTATCTGGTTCTGATGAACCCCAGCAGAGTGGTTGGCTACGTACTTTCAGTGTATCATCTTACAAGGCATATTTTGACGTTGACACTTCAGATGTTCTAGAGAGGATTAAAGACTCGCTCCTTCCATATAGTGGAGCTTTCAATGAAAAAACAACTAACAATCCAGATTTGTATGGACCTTTCTGGATATGTACCACCCTAATATTTGTTGCAGCTGCCATTGGCACCTTCGTGACATATGTAGCACACAAGGTCAAGAGTGAAGAGTGGGCATATGACATTAATGTAGTGCAATGGTCTGCTGGATTGTTCTATGGTTACGTCACTGTTGTTCCTCTTGTGCTGTATGTAATCCTTAAATACTTCTCGGCACCAGCAGGTCTCGTTCAGCTGTTTTGTCTGTATGGCTACTCCTTGTTTGTCTTTATACCAGCTTTGGTAAGTCCCTGGATGTATTTTTTCATTAAGCTTATTACCAGAAAGATGTGTCATAGAAAGGTCTGCATGTCCCAAAAGCTCATGCCAAGACCGAAGCTTTACACGATTAAATATGTAGATTTTGAAAACATGGGCCAAAATGTTCTTCATATTGAAATTTGTGTCAAAAAGTCATTAGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

273

Amino Acids

30.65

Weight (kDa)

8.16

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 109 - 217 2.2e-14 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 566
AccB1I GGYRCC 2 cut(s) 422, 568
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 62
AclWI GGATC 2 cut(s) 55, 65
AcsI RAATTY 2 cut(s) 92, 792
AcuI CTGAAG 2 cut(s) 95, 270
AfaI GTAC 2 cut(s) 241, 391
AfiI CCNNNNNNNGG 3 cut(s) 74, 203, 329
AgsI TTSAA 4 cut(s) 192, 340, 761, 791
AjnI CCWGG 2 cut(s) 73, 644
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 7 cut(s) 335, 413, 589, 632, 667, 715, 733
AluI AGCT 7 cut(s) 335, 413, 589, 632, 667, 715, 733
Alw26I GTCTC 2 cut(s) 46, 584
AlwI GGATC 2 cut(s) 55, 65
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 2 cut(s) 76, 769
ApeKI GCWGC 3 cut(s) 59, 410, 413
ApoI RAATTY 2 cut(s) 92, 792
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 374, 769
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 374
BanI GGYRCC 2 cut(s) 422, 568
BbvI GCAGC 3 cut(s) 46, 400, 422
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 75, 646
BcoDI GTCTC 2 cut(s) 46, 584
BfaI CTAG 2 cut(s) 150, 296
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 144
BisI GCNGC 3 cut(s) 60, 411, 414
BlsI GCNGC 3 cut(s) 61, 412, 415
Bme1390I CCNGG 2 cut(s) 75, 646
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 374, 769
BmiI GGNNCC 3 cut(s) 66, 424, 570
BmrFI CCNGG 2 cut(s) 75, 646
BmsI GCATC 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 644
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 203, 329
Bse3DI GCAATG 1 cut(s) 497
BseBI CCWGG 2 cut(s) 75, 646
BseDI CCNNGG 1 cut(s) 644
BseGI GGATG 1 cut(s) 654
BseLI CCNNNNNNNGG 3 cut(s) 74, 203, 329
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 3 cut(s) 46, 400, 422
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 78, 771
BshNI GGYRCC 2 cut(s) 422, 568
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 627, 691
BslI CCNNNNNNNGG 3 cut(s) 74, 203, 329
BsmAI GTCTC 2 cut(s) 46, 584
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 627, 691
BsnI GGCC 2 cut(s) 78, 771
Bso31I GGTCTC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 3 cut(s) 47, 70, 144
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 78, 771
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 66, 424, 570
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 2 cut(s) 55, 65
BspT107I GGYRCC 2 cut(s) 422, 568
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 644
BssMI GATC 3 cut(s) 47, 70, 144
Bst2UI CCWGG 2 cut(s) 75, 646
Bst4CI ACNGT 2 cut(s) 88, 526
Bst6I CTCTTC 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 654
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 3 cut(s) 50, 73, 147
BstMAI GTCTC 2 cut(s) 46, 584
BstMBI GATC 3 cut(s) 47, 70, 144
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 2 cut(s) 75, 646
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 2 cut(s) 73, 644
BstSNI TACGTA 1 cut(s) 239
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 46, 400, 422
BstX2I RGATCY 3 cut(s) 47, 70, 144
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 47, 70, 144
BsuRI GGCC 2 cut(s) 78, 771
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 253, 522
BtuMI TCGCGA 1 cut(s) 171
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 374, 769
CseI GACGC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 240, 390
CviAII CATG 3 cut(s) 703, 718, 766
CviQI GTAC 2 cut(s) 240, 390
DdeI CTNAG 1 cut(s) 129
DpnI GATC 3 cut(s) 49, 72, 146
DpnII GATC 3 cut(s) 47, 70, 144
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco105I TACGTA 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 95, 270
Eco88I CYCGRG 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 73, 644
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 3 cut(s) 706, 721, 769
FaqI GGGAC 2 cut(s) 627, 691
FatI CATG 3 cut(s) 702, 717, 765
FauNDI CATATG 2 cut(s) 436, 472
Fnu4HI GCNGC 3 cut(s) 60, 411, 414
FokI GGATG 1 cut(s) 661
Fsp4HI GCNGC 3 cut(s) 60, 411, 414
FspBI CTAG 2 cut(s) 150, 296
GlaI GCGC 1 cut(s) 157
GluI GCNGC 3 cut(s) 60, 411, 414
GsaI CCCAGC 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 78, 771
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 706, 721, 769
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 2 cut(s) 665, 731
HinfI GANTC 2 cut(s) 101, 311
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 114, 130, 211, 289
Hpy188III TCNNGA 8 cut(s) 45, 68, 170, 296, 362, 382, 430, 454
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 119, 329, 436
HpyCH4III ACNGT 2 cut(s) 88, 526
HpyCH4IV ACGT 3 cut(s) 238, 276, 519
HpyCH4V TGCA 4 cut(s) 176, 410, 490, 702
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 3 cut(s) 238, 276, 519
Hsp92II CATG 3 cut(s) 706, 721, 769
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 47, 70, 144
LmnI GCTCC 2 cut(s) 321, 332
Lsp1109I GCAGC 3 cut(s) 46, 400, 422
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 150, 296
MaeII ACGT 3 cut(s) 238, 276, 519
MaeIII GTNAC 3 cut(s) 430, 515, 520
MalI GATC 3 cut(s) 49, 72, 146
MboI GATC 3 cut(s) 47, 70, 144
MboII GAAGA 3 cut(s) 154, 473, 773
MflI RGATCY 3 cut(s) 47, 70, 144
MluCI AATT 3 cut(s) 13, 92, 792
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 7 cut(s) 92, 124, 132, 174, 177, 294, 543
MseI TTAA 6 cut(s) 306, 480, 555, 663, 744, 820
MslI CAYNNNNRTG 1 cut(s) 428
MspA1I CMGCKG 2 cut(s) 413, 589
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 75, 646
MvaI CCWGG 2 cut(s) 75, 646
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeI CATATG 2 cut(s) 436, 472
NdeII GATC 3 cut(s) 47, 70, 144
NlaIII CATG 3 cut(s) 706, 721, 769
NlaIV GGNNCC 3 cut(s) 66, 424, 570
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 2 cut(s) 430, 520
NruI TCGCGA 1 cut(s) 171
NspI RCATGY 1 cut(s) 706
OliI CACNNNNGTG 1 cut(s) 428
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 3 cut(s) 61, 412, 415
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 73, 644
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 2 cut(s) 73, 644
PspN4I GGNNCC 3 cut(s) 66, 424, 570
PspPI GGNCC 2 cut(s) 374, 769
PsuI RGATCY 3 cut(s) 47, 70, 144
PvuII CAGCTG 2 cut(s) 413, 589
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 2 cut(s) 241, 391
RsaNI GTAC 2 cut(s) 240, 390
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 6 cut(s) 306, 480, 555, 663, 744, 820
SatI GCNGC 3 cut(s) 60, 411, 414
Sau3AI GATC 3 cut(s) 47, 70, 144
Sau96I GGNCC 2 cut(s) 374, 769
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 75, 646
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 428
SnaBI TACGTA 1 cut(s) 239
Sse9I AATT 3 cut(s) 13, 92, 792
SsiI CCGC 1 cut(s) 62
SspI AATATT 1 cut(s) 402
SspMI CTAG 2 cut(s) 150, 296
StyD4I CCNGG 2 cut(s) 73, 644
TaaI ACNGT 2 cut(s) 88, 526
TaiI ACGT 3 cut(s) 241, 279, 522
TaqII GACCGA 1 cut(s) 742
TasI AATT 3 cut(s) 13, 92, 792
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 6 cut(s) 306, 480, 555, 663, 744, 820
Tru9I TTAA 6 cut(s) 306, 480, 555, 663, 744, 820
TscAI CASTG 2 cut(s) 253, 529
TseFI GTSAC 2 cut(s) 430, 520
TseI GCWGC 3 cut(s) 59, 410, 413
Tsp45I GTSAC 2 cut(s) 430, 520
TspDTI ATGAA 4 cut(s) 228, 357, 649, 773
TspRI CASTG 2 cut(s) 253, 529
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 92, 792
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 1 cut(s) 706
XspI CTAG 2 cut(s) 150, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.