MD04G1206000.v1.1

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0010775
Physical Location & Seq
Forward (+)
29190348 .. 29193663
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1206000.v1.1.491

Sequence Viewer

Length: 843 bp
ATGATGTCCGGAAATTATACCACCATTGACAACCAAAACGTCTCGGGATCTGTTCCTGCTGCGGTTCCAGATCCAGGCCACCTCACCGTGAAATTCCAAGATTCAACCCTTCAGACATTTCCTCCATCCGAGACACGAGGGAAGATCGCTCGTGGTGCCCTCCCTCCTAGTGATGCTGATGACACATTTTCTAAACCTGTATCTGGTTCTGATGAACCCCAGCAAGGTGGTTGGCTACGGATATTCTCTGTAGCTTCTTACAAGCAATACTTTGATGTTGATACATCAGATGTTCTAGAGAGGATTAAAGATTCACTCCTTCCATTCAGTGGAACCTTCAATGAGAAAACATCTAACAGCCCTGATTTGTATGGACCTTTCTGGATATGCACTACCCTTATATTTGTAGCAGCTGCCATTGGCACTTTTGTGACATATGTAGCACACAAGATGAAGAGTAAAGATTGGGAATATGACATTAATGTGGTCCAGTGGTCTGCAGGATTGTTCTATGGCTATGTCACTATTGTTCCTCTTGTACTGTATGTAATTCTCAAATACTTCTCGGCACCATCAGGTCTCGTTCAGCTGTTTTGTCTCTATGGCTACTCCCTGTTTGTCTTCATTCCAGCATTGTGCCTCTCAGTTGTGCCGTTGGAAATTTTCAGATGGGTAATTGCAGGCGTAGCTGGGGTTATGTCTGCCACCTTTGTCGCAGTTAACCTTCGCGCCCACATCGTATCAGCAGGTGAAAGGTGGTTCTTGATTGTAGCCGGGATCTTTCTACTGCAGTTAGCTCTGTCTGTCGTCCTAAAACTCTATTTGTTCACCGTCACAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

281

Amino Acids

30.81

Weight (kDa)

5.58

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 112 - 270 2.9e-16 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 737
Acc36I ACCTGC 1 cut(s) 737
AccB1I GGYRCC 2 cut(s) 155, 568
AccB7I CCANNNNNTGG 1 cut(s) 329
AccII CGCG 1 cut(s) 729
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 1 cut(s) 62
AclWI GGATC 3 cut(s) 55, 65, 785
AcsI RAATTY 2 cut(s) 92, 660
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 4 cut(s) 74, 203, 224, 329
AgsI TTSAA 2 cut(s) 105, 340
AjnI CCWGG 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 5 cut(s) 254, 413, 589, 689, 797
AluI AGCT 5 cut(s) 254, 413, 589, 689, 797
Alw26I GTCTC 4 cut(s) 46, 125, 584, 602
AlwI GGATC 3 cut(s) 55, 65, 785
Ama87I CYCGRG 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 59, 410, 413
ApoI RAATTY 2 cut(s) 92, 660
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 731
AspS9I GGNCC 2 cut(s) 374, 487
AsuC2I CCSGG 1 cut(s) 775
AsuHPI GGTGA 3 cut(s) 76, 761, 820
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 2 cut(s) 374, 487
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 2 cut(s) 155, 568
BauI CACGAG 2 cut(s) 135, 150
BbsI GAAGAC 1 cut(s) 613
BbvI GCAGC 3 cut(s) 46, 400, 422
BccI CCATC 3 cut(s) 133, 580, 663
BceAI ACGGC 1 cut(s) 637
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 4 cut(s) 46, 125, 584, 602
BfaI CTAG 2 cut(s) 168, 296
BfmI CTRYAG 3 cut(s) 249, 498, 788
BfuAI ACCTGC 1 cut(s) 737
BisI GCNGC 3 cut(s) 60, 411, 414
BlsI GCNGC 3 cut(s) 61, 412, 415
Bme1390I CCNGG 2 cut(s) 75, 775
Bme18I GGWCC 2 cut(s) 374, 487
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 374, 487
BmiI GGNNCC 4 cut(s) 66, 157, 334, 570
BmrFI CCNGG 2 cut(s) 75, 775
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 613
BpuMI CCSGG 1 cut(s) 775
BsaI GGTCTC 1 cut(s) 584
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 203, 224, 329
Bse1I ACTGG 1 cut(s) 490
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 4 cut(s) 74, 203, 224, 329
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 490
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 3 cut(s) 46, 400, 422
BseYI CCCAGC 2 cut(s) 219, 689
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 2 cut(s) 155, 568
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 2 cut(s) 9, 774
BslI CCNNNNNNNGG 4 cut(s) 74, 203, 224, 329
BsmAI GTCTC 4 cut(s) 46, 125, 584, 602
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 4 cut(s) 47, 70, 144, 777
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 656
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 4 cut(s) 66, 157, 334, 570
BspMAI CTGCAG 2 cut(s) 502, 792
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 3 cut(s) 55, 65, 785
BspT107I GGYRCC 2 cut(s) 155, 568
BspTNI GGTCTC 1 cut(s) 584
BsrI ACTGG 1 cut(s) 490
BssMI GATC 4 cut(s) 47, 70, 144, 777
BssSI CACGAG 2 cut(s) 135, 150
Bst2BI CACGAG 2 cut(s) 135, 150
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 88, 543, 832, 838
Bst6I CTCTTC 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 729
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 4 cut(s) 50, 73, 147, 780
BstMAI GTCTC 4 cut(s) 46, 125, 584, 602
BstMBI GATC 4 cut(s) 47, 70, 144, 777
BstMWI GCNNNNNNNGC 2 cut(s) 155, 686
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 773
BstSFI CTRYAG 3 cut(s) 249, 498, 788
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 3 cut(s) 46, 400, 422
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 3 cut(s) 47, 70, 777
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 47, 70, 777
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 3 cut(s) 334, 497, 843
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 1 cut(s) 682
CfoI GCGC 1 cut(s) 731
Cfr13I GGNCC 2 cut(s) 374, 487
Csp6I GTAC 1 cut(s) 539
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 1 cut(s) 643
DpnI GATC 4 cut(s) 49, 72, 146, 779
DpnII GATC 4 cut(s) 47, 70, 144, 777
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 2 cut(s) 374, 487
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 46
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 60, 411, 414
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 60, 411, 414
FspBI CTAG 2 cut(s) 168, 296
GlaI GCGC 1 cut(s) 730
GluI GCNGC 3 cut(s) 60, 411, 414
GsaI CCCAGC 2 cut(s) 223, 693
HaeIII GGCC 1 cut(s) 78
HapII CCGG 2 cut(s) 9, 774
HhaI GCGC 1 cut(s) 731
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 2 cut(s) 101, 311
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 2 cut(s) 9, 774
HphI GGTGA 3 cut(s) 76, 761, 820
Hpy166II GTNNAC 2 cut(s) 721, 828
Hpy188I TCNGA 5 cut(s) 114, 130, 211, 289, 668
Hpy188III TCNNGA 6 cut(s) 9, 45, 68, 296, 382, 763
Hpy8I GTNNAC 2 cut(s) 721, 828
HpyAV CCTTC 4 cut(s) 119, 329, 346, 734
HpyCH4III ACNGT 4 cut(s) 88, 543, 832, 838
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 390, 500, 680, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 686
HpyF3I CTNAG 1 cut(s) 643
HpySE526I ACGT 1 cut(s) 39
HspAI GCGC 1 cut(s) 729
Kpn2I TCCGGA 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 721
Kzo9I GATC 4 cut(s) 47, 70, 144, 777
Lsp1109I GCAGC 3 cut(s) 46, 400, 422
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 168, 296
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 430, 520, 832
MalI GATC 4 cut(s) 49, 72, 146, 779
MboI GATC 4 cut(s) 47, 70, 144, 777
MboII GAAGA 3 cut(s) 154, 466, 613
MflI RGATCY 3 cut(s) 47, 70, 777
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 5 cut(s) 13, 92, 549, 660, 675
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 8 cut(s) 92, 131, 132, 170, 174, 294, 543, 650
MroI TCCGGA 1 cut(s) 8
MseI TTAA 3 cut(s) 306, 480, 720
MslI CAYNNNNRTG 2 cut(s) 428, 482
MspA1I CMGCKG 2 cut(s) 413, 589
MspI CCGG 2 cut(s) 9, 774
MspR9I CCNGG 2 cut(s) 75, 775
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 155, 686
NciI CCSGG 1 cut(s) 775
NdeI CATATG 1 cut(s) 436
NdeII GATC 4 cut(s) 47, 70, 144, 777
NlaIV GGNNCC 4 cut(s) 66, 157, 334, 570
NmeAIII GCCGAG 1 cut(s) 545
NmuCI GTSAC 3 cut(s) 430, 520, 832
OliI CACNNNNGTG 1 cut(s) 428
PaqCI CACCTGC 1 cut(s) 737
PfeI GAWTC 2 cut(s) 101, 311
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 3 cut(s) 61, 412, 415
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 2 cut(s) 219, 689
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 66, 157, 334, 570
PspPI GGNCC 2 cut(s) 374, 487
PstI CTGCAG 2 cut(s) 502, 792
PsuI RGATCY 3 cut(s) 47, 70, 777
PvuII CAGCTG 2 cut(s) 413, 589
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
RseI CAYNNNNRTG 2 cut(s) 428, 482
SaqAI TTAA 3 cut(s) 306, 480, 720
SatI GCNGC 3 cut(s) 60, 411, 414
Sau3AI GATC 4 cut(s) 47, 70, 144, 777
Sau96I GGNCC 2 cut(s) 374, 487
ScrFI CCNGG 2 cut(s) 75, 775
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 3 cut(s) 249, 498, 788
SinI GGWCC 2 cut(s) 374, 487
SmiMI CAYNNNNRTG 2 cut(s) 428, 482
Sse9I AATT 5 cut(s) 13, 92, 549, 660, 675
SsiI CCGC 1 cut(s) 62
SspMI CTAG 2 cut(s) 168, 296
StyD4I CCNGG 2 cut(s) 73, 773
TaaI ACNGT 4 cut(s) 88, 543, 832, 838
TaiI ACGT 1 cut(s) 42
TasI AATT 5 cut(s) 13, 92, 549, 660, 675
TatI WGTACW 1 cut(s) 538
TfiI GAWTC 2 cut(s) 101, 311
Tru1I TTAA 3 cut(s) 306, 480, 720
Tru9I TTAA 3 cut(s) 306, 480, 720
TscAI CASTG 3 cut(s) 334, 497, 843
TseFI GTSAC 3 cut(s) 430, 520, 832
TseI GCWGC 3 cut(s) 59, 410, 413
Tsp45I GTSAC 3 cut(s) 430, 520, 832
TspDTI ATGAA 3 cut(s) 228, 467, 613
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 3 cut(s) 334, 497, 843
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 374, 487
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 92, 660
XbaI TCTAGA 1 cut(s) 295
XspI CTAG 2 cut(s) 168, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.