Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005317

Physical Location & Seq

Genomic Coordinates Reverse (-)

1676504 .. 1679061

Gene Structure 2558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTGCTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCGCCGGCGATTCTGACTCATTCGCCGGAGTTAAGGTCGGATCTGTCGGAGAGACAGGACAACGTGTGGATAAACAGAGCAACTCTGCAACGCACTTAGCTTTCTCACTTGGTGATGTAAAGAGTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTGGAACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCTATGGAGAACAACAATACTATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAAACATGGAAACGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGAGACGCCAATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGTAGATGCCGCAAGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTGGGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAATAGCGGAACCAATGCAAAGAAAGGTGATGGAAGTATGCAGATTCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATTCTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAACGGATTAAATGTGTCGGGATCAGAAGTTACTAGCATGAACTACTTCCTAAGTTCTCCCGTTCATTCTCTTGGTGGCATGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGCAATGGATAATGGCTGCTGCAATTTCAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

295

Amino Acids

32.14

Weight (kDa)

9.62

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	137 - 195	2.5e-23	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05690 AT3G05690 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510
fragaria_vesca	FvH4_6g20510
malus_domestica	MD12G1042100.v1.1 MD14G1041300.v1.1
prunus_persica	Prupe.7G093100_v2.0.a1 Prupe.7G093100_v2.0.a1
pyrus_communis	pycom12g03680 pycom14g03510
rosa_chinensis	RchiOBHm_Chr3g0476401
rosa_laevigata	RLG00000023772
rosa_multiflora	Rmu_sc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405310
rosa_rugosa	Rorug03G0154100 Rorug03G0154100 Rorug03G0154100 Rorug03G0154200
rosa_samantha	Rh3AG205300 Rh3BG236800 Rh3CG231300 Rh3DG231200
rosa_wichuraiana	Rw3G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	465, 538
AccIII	TCCGGA	2 cut(s)	85, 712
AciI	CCGC	4 cut(s)	463, 514, 556, 618
AclWI	GGATC	6 cut(s)	76, 142, 367, 564, 577, 766
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	720
AcyI	GRCGYC	2 cut(s)	454, 559
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	469, 719
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	589, 880
AluBI	AGCT	2 cut(s)	194, 248
AluI	AGCT	2 cut(s)	194, 248
Alw26I	GTCTC	5 cut(s)	32, 98, 140, 445, 666
AlwI	GGATC	6 cut(s)	76, 142, 367, 564, 577, 766
Aor13HI	TCCGGA	2 cut(s)	85, 712
ApeKI	GCWGC	8 cut(s)	473, 476, 842, 845, 848, 851, 867, 870
ApoI	RAATTY	1 cut(s)	694
Asp700I	GAANNNNTTC	2 cut(s)	705, 782
AspLEI	GCGC	2 cut(s)	467, 540
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	3 cut(s)	218, 258, 650
AvaII	GGWCC	1 cut(s)	723
BamHI	GGATCC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	8 cut(s)	460, 463, 854, 854, 857, 857, 860, 863
BccI	CCATC	3 cut(s)	419, 549, 635
BceAI	ACGGC	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	324
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	5 cut(s)	32, 98, 140, 445, 666
BfaI	CTAG	3 cut(s)	564, 771, 828
BfuI	GTATCC	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	4 cut(s)	84, 571, 622, 724
BmsI	GCATC	2 cut(s)	500, 538
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
Bpu10I	CCTNAGC	2 cut(s)	669, 675
BsaHI	GRCGYC	2 cut(s)	454, 559
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	3 cut(s)	85, 572, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 719
Bse118I	RCCGGY	1 cut(s)	98
Bse3DI	GCAATG	2 cut(s)	551, 861
BseAI	TCCGGA	2 cut(s)	85, 712
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	469, 719
BseMI	GCAATG	2 cut(s)	551, 861
BseMII	CTCAG	6 cut(s)	86, 305, 377, 677, 689, 704
BseXI	GCAGC	8 cut(s)	460, 463, 854, 854, 857, 857, 860, 863
Bsh1236I	CGCG	2 cut(s)	465, 538
BsiSI	CCGG	5 cut(s)	86, 99, 120, 573, 713
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	2 cut(s)	469, 719
BsmAI	GTCTC	5 cut(s)	32, 98, 140, 445, 666
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	736
Bso31I	GGTCTC	1 cut(s)	32
Bsp13I	TCCGGA	2 cut(s)	85, 712
Bsp143I	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	4 cut(s)	463, 514, 556, 618
BspCNI	CTCAG	6 cut(s)	85, 304, 376, 676, 688, 703
BspEI	TCCGGA	2 cut(s)	85, 712
BspFNI	CGCG	2 cut(s)	465, 538
BspLI	GGNNCC	4 cut(s)	84, 571, 622, 724
BspPI	GGATC	6 cut(s)	76, 142, 367, 564, 577, 766
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	551, 861
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
BssNI	GRCGYC	2 cut(s)	454, 559
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	2 cut(s)	454, 559
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	100, 518
BstDEI	CTNAG	9 cut(s)	72, 190, 291, 363, 663, 669, 675, 690, 788
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	709
BstFNI	CGCG	2 cut(s)	465, 538
BstHHI	GCGC	2 cut(s)	467, 540
BstKTI	GATC	7 cut(s)	71, 137, 303, 362, 490, 572, 761
BstMAI	GTCTC	5 cut(s)	32, 98, 140, 445, 666
BstMBI	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
BstMWI	GCNNNNNNNGC	6 cut(s)	462, 473, 526, 535, 848, 851
BstUI	CGCG	2 cut(s)	465, 538
BstV1I	GCAGC	8 cut(s)	460, 463, 854, 854, 857, 857, 860, 863
BstX2I	RGATCY	4 cut(s)	68, 134, 359, 569
BstYI	RGATCY	4 cut(s)	68, 134, 359, 569
BsuI	GTATCC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	709
Cac8I	GCNNGC	2 cut(s)	100, 518
CfoI	GCGC	2 cut(s)	467, 540
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	723
CseI	GACGC	2 cut(s)	462, 548
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	7 cut(s)	242, 391, 437, 548, 727, 775, 817
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	9 cut(s)	72, 190, 291, 363, 663, 669, 675, 690, 788
DpnI	GATC	7 cut(s)	70, 136, 302, 361, 489, 571, 760
DpnII	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
DraIII	CACNNNGTG	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	723
Eco57I	CTGAAG	1 cut(s)	720
EcoRI	GAATTC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	2 cut(s)	531, 553
ErhI	CCWWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	7 cut(s)	245, 394, 440, 551, 730, 778, 820
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	7 cut(s)	241, 390, 436, 547, 726, 774, 816
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	487
FokI	GGATG	1 cut(s)	696
FspBI	CTAG	3 cut(s)	564, 771, 828
GlaI	GCGC	2 cut(s)	466, 539
HapII	CCGG	5 cut(s)	86, 99, 120, 573, 713
HgaI	GACGC	2 cut(s)	462, 548
HhaI	GCGC	2 cut(s)	467, 540
Hin1I	GRCGYC	2 cut(s)	454, 559
Hin1II	CATG	7 cut(s)	245, 394, 440, 551, 730, 778, 820
Hin6I	GCGC	2 cut(s)	465, 538
HinP1I	GCGC	2 cut(s)	465, 538
HinfI	GANTC	7 cut(s)	91, 104, 110, 217, 441, 582, 655
HpaII	CCGG	5 cut(s)	86, 99, 120, 573, 713
HphI	GGTGA	3 cut(s)	218, 258, 650
Hpy166II	GTNNAC	2 cut(s)	57, 421
Hpy188I	TCNGA	9 cut(s)	109, 134, 143, 366, 492, 603, 693, 700, 763
Hpy188III	TCNNGA	5 cut(s)	86, 485, 586, 713, 756
Hpy8I	GTNNAC	2 cut(s)	57, 421
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	8 cut(s)	10, 182, 262, 529, 551, 629, 652, 873
HpyF10VI	GCNNNNNNNGC	6 cut(s)	462, 473, 526, 535, 848, 851
HpyF3I	CTNAG	9 cut(s)	72, 190, 291, 363, 663, 669, 675, 690, 788
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	2 cut(s)	454, 559
Hsp92II	CATG	7 cut(s)	245, 394, 440, 551, 730, 778, 820
HspAI	GCGC	2 cut(s)	465, 538
Kpn2I	TCCGGA	2 cut(s)	85, 712
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
LmnI	GCTCC	3 cut(s)	43, 88, 245
LpnPI	CCDG	7 cut(s)	99, 112, 133, 135, 355, 586, 726
Lsp1109I	GCAGC	8 cut(s)	460, 463, 854, 854, 857, 857, 860, 863
LweI	GCATC	2 cut(s)	500, 538
MaeI	CTAG	3 cut(s)	564, 771, 828
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	683, 766
MalI	GATC	7 cut(s)	70, 136, 302, 361, 489, 571, 760
MboI	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
MboII	GAAGA	3 cut(s)	22, 413, 505
MflI	RGATCY	4 cut(s)	68, 134, 359, 569
MluCI	AATT	3 cut(s)	497, 694, 874
MlyI	GAGTC	3 cut(s)	100, 104, 226
MmeI	TCCRAC	2 cut(s)	112, 121
MnlI	CCTC	4 cut(s)	249, 393, 560, 684
Mph1103I	ATGCAT	2 cut(s)	531, 553
MreI	CGCCGGCG	1 cut(s)	98
MroI	TCCGGA	2 cut(s)	85, 712
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	2 cut(s)	705, 782
MseI	TTAA	2 cut(s)	126, 746
MslI	CAYNNNNRTG	3 cut(s)	416, 546, 821
MspI	CCGG	5 cut(s)	86, 99, 120, 573, 713
MvnI	CGCG	2 cut(s)	465, 538
MwoI	GCNNNNNNNGC	6 cut(s)	462, 473, 526, 535, 848, 851
NaeI	GCCGGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	7 cut(s)	245, 394, 440, 551, 730, 778, 820
NlaIV	GGNNCC	4 cut(s)	84, 571, 622, 724
NsiI	ATGCAT	2 cut(s)	531, 553
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	705, 782
PfeI	GAWTC	4 cut(s)	104, 441, 582, 655
PleI	GAGTC	3 cut(s)	99, 104, 225
PpsI	GAGTC	3 cut(s)	99, 104, 225
PspN4I	GGNNCC	4 cut(s)	84, 571, 622, 724
PspPI	GGNCC	1 cut(s)	723
PsuI	RGATCY	4 cut(s)	68, 134, 359, 569
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	3 cut(s)	416, 546, 821
SaqAI	TTAA	2 cut(s)	126, 746
Sau3AI	GATC	7 cut(s)	68, 134, 300, 359, 487, 569, 758
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	3 cut(s)	100, 104, 226
SetI	ASST	8 cut(s)	28, 132, 160, 196, 250, 271, 640, 887
SfaNI	GCATC	2 cut(s)	500, 538
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	723
SmiMI	CAYNNNNRTG	3 cut(s)	416, 546, 821
Sse9I	AATT	3 cut(s)	497, 694, 874
SsiI	CCGC	4 cut(s)	463, 514, 556, 618
SspMI	CTAG	3 cut(s)	564, 771, 828
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	737
TasI	AATT	3 cut(s)	497, 694, 874
TauI	GCSGC	2 cut(s)	516, 559
TfiI	GAWTC	4 cut(s)	104, 441, 582, 655
Tru1I	TTAA	2 cut(s)	126, 746
Tru9I	TTAA	2 cut(s)	126, 746
TseI	GCWGC	8 cut(s)	473, 476, 842, 845, 848, 851, 867, 870
TspDTI	ATGAA	4 cut(s)	698, 743, 791, 791
TspGWI	ACGGA	2 cut(s)	413, 756
VpaK11BI	GGWCC	1 cut(s)	723
XapI	RAATTY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XmnI	GAANNNNTTC	2 cut(s)	705, 782
XspI	CTAG	3 cut(s)	564, 771, 828
Zsp2I	ATGCAT	2 cut(s)	531, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.