Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005317

Physical Location & Seq

Genomic Coordinates Reverse (-)

14123785 .. 14130216

Gene Structure 6432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTATGCAAACTGTTCATTACAAAGAACATGAAGGACTTGGGCAGCTGTCATCAGTGTTACCTTGGTGGGGTACCGCCTTTGGATCTCAACAAGCTTATGGTGAATCCTGTGGCCACTCTAAACCTTTCACCATGGAGCTTCCAAATAGTGGAAACAAACTCACTGCCACTAAGCAACCAGGGCGGGGCACTGAGCAAGGACTGGATAAAGAGATCACAAATCAGTTTACCATGTTCCCTGGGGACGGGAAAAAATCTCAGCCAGATATCTCTCTGCAATCATCCCCACCAAAATATCGTGGTCATTTTGAGCTGGGGTTCAACCAGCCTGTGATTTGTGCAAAATATCCGTACATGGATCAATGTTATGGACTGTTCTCAACATATGGATCTCAAGTTTCGGGACGCGTGATGCTGCCGCTGAATTTGACTACAGATGAAGGACCAATCTATGTCAATGCTAAGCAATACCGCGGAATCATCCGGCGCAGACAATCCCGTGCAAAGGCAGTCATGGAAAACAGAGCAGCTAGACTCCGTAAGCCATACATGCATGAATCACGCCATCTTCATGCCATGCGCCGACCAAGGGGGTGTGGTGGTCGTTTTCTGAACAGCAAGACTTCGAACAACGGGAAAGGTGGAAATGGAACTAAGCAAGTTGGCGATGTGCAGCTGTTCAGGCACTCCGGTTCTCAGAGCTCTGAAGTCCTGCACTCTGAAACTGGAACTTTGAACTCATCAAAGACAAATAGCAGCAGTTCCAACATATCAGGCTCAGAGGTGACCAGTACGTACTCTAGGGGAGATCTTGATCATTTTTCAATGAATCATCATCTCGGACACTCTGTGCATTCTCTGTCAAACATGATGGATGGTACGCGTGGCATGGTTATGCCCACGAAATGGATTGCAGCAGTTGATAACTGCTGCAACCTCAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

317

Amino Acids

34.9

Weight (kDa)

9.55

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	150 - 204	8.2e-25	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05690 AT3G05690 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510
fragaria_vesca	FvH4_6g20510
malus_domestica	MD12G1042100.v1.1 MD14G1041300.v1.1
prunus_persica	Prupe.7G093100_v2.0.a1 Prupe.7G093100_v2.0.a1
pyrus_communis	pycom12g03680 pycom14g03510
rosa_chinensis	RchiOBHm_Chr3g0476401
rosa_laevigata	RLG00000023772
rosa_multiflora	Rmu_sc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405310
rosa_rugosa	Rorug03G0154100 Rorug03G0154100 Rorug03G0154100 Rorug03G0154200
rosa_samantha	Rh3AG205300 Rh3BG236800 Rh3CG231300 Rh3DG231200
rosa_wichuraiana	Rw3G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	2 cut(s)	152, 909
AccII	CGCG	3 cut(s)	411, 477, 886
AciI	CCGC	5 cut(s)	78, 187, 422, 475, 477
AclWI	GGATC	3 cut(s)	94, 369, 400
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	729
AdeI	CACNNNGTG	1 cut(s)	853
AfaI	GTAC	5 cut(s)	76, 356, 796, 800, 883
AfiI	CCNNNNNNNGG	7 cut(s)	71, 152, 188, 248, 508, 592, 909
AflIII	ACRYGT	2 cut(s)	409, 884
AgsI	TTSAA	3 cut(s)	325, 739, 828
AjnI	CCWGG	2 cut(s)	181, 241
AluBI	AGCT	7 cut(s)	49, 98, 142, 316, 533, 679, 705
AluI	AGCT	7 cut(s)	49, 98, 142, 316, 533, 679, 705
Alw21I	GWGCWC	1 cut(s)	707
AlwI	GGATC	3 cut(s)	94, 369, 400
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	7 cut(s)	46, 418, 530, 676, 759, 917, 933
ApoI	RAATTY	1 cut(s)	427
Asp718I	GGTACC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	492, 585
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	116, 124, 799
AsuII	TTCGAA	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	707
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	7 cut(s)	58, 405, 542, 688, 771, 920, 929
BccI	CCATC	3 cut(s)	576, 868, 872
BciT130I	CCWGG	2 cut(s)	183, 243
BclI	TGATCA	1 cut(s)	817
BfaI	CTAG	2 cut(s)	534, 804
BfmI	CTRYAG	1 cut(s)	435
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	8 cut(s)	47, 419, 422, 531, 677, 760, 918, 934
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	8 cut(s)	48, 420, 423, 532, 678, 761, 919, 935
Bme1390I	CCNGG	2 cut(s)	183, 243
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	183, 243
BmsI	GCATC	1 cut(s)	405
Bpu1102I	GCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	816
BsaJI	CCNNGG	7 cut(s)	65, 135, 182, 241, 242, 475, 590
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	7 cut(s)	71, 152, 188, 248, 508, 592, 909
Bse1I	ACTGG	3 cut(s)	210, 733, 792
Bse8I	GATNNNNATC	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	183, 243
BseDI	CCNNGG	7 cut(s)	65, 135, 182, 241, 242, 475, 590
BseGI	GGATG	3 cut(s)	284, 483, 883
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	7 cut(s)	71, 152, 188, 248, 508, 592, 909
BseMII	CTCAG	4 cut(s)	186, 275, 713, 795
BseNI	ACTGG	3 cut(s)	210, 733, 792
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	7 cut(s)	58, 405, 542, 688, 771, 920, 929
BseYI	CCCAGC	1 cut(s)	316
BsgI	GTGCAG	2 cut(s)	695, 701
Bsh1236I	CGCG	3 cut(s)	411, 477, 886
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	487, 693
BslFI	GGGAC	2 cut(s)	260, 420
BslI	CCNNNNNNNGG	7 cut(s)	71, 152, 188, 248, 508, 592, 909
BsmFI	GGGAC	2 cut(s)	260, 420
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	194, 707
Bsp143I	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	5 cut(s)	78, 187, 422, 475, 477
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	4 cut(s)	187, 274, 712, 794
BspFNI	CGCG	3 cut(s)	411, 477, 886
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	3 cut(s)	94, 369, 400
BspT104I	TTCGAA	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	210, 733, 792
BssECI	CCNNGG	7 cut(s)	65, 135, 182, 241, 242, 475, 590
BssMI	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
BssT1I	CCWWGG	3 cut(s)	65, 135, 590
Bst2UI	CCWGG	2 cut(s)	183, 243
Bst4CI	ACNGT	2 cut(s)	16, 378
BstBAI	YACGTR	1 cut(s)	798
BstBI	TTCGAA	1 cut(s)	629
BstDEI	CTNAG	7 cut(s)	174, 195, 261, 465, 657, 699, 781
BstDSI	CCRYGG	2 cut(s)	135, 475
BstEII	GGTNACC	1 cut(s)	787
BstF5I	GGATG	3 cut(s)	284, 483, 883
BstFNI	CGCG	3 cut(s)	411, 477, 886
BstHHI	GCGC	2 cut(s)	492, 585
BstKTI	GATC	6 cut(s)	89, 219, 364, 395, 814, 820
BstMBI	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 553, 685
BstNI	CCWGG	2 cut(s)	183, 243
BstNSI	RCATGY	1 cut(s)	556
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	2 cut(s)	181, 241
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	194
BstSNI	TACGTA	1 cut(s)	798
BstUI	CGCG	3 cut(s)	411, 477, 886
BstV1I	GCAGC	7 cut(s)	58, 405, 542, 688, 771, 920, 929
BstX2I	RGATCY	3 cut(s)	86, 392, 811
BstYI	RGATCY	3 cut(s)	86, 392, 811
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	2 cut(s)	135, 475
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	3 cut(s)	284, 483, 883
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	63, 165, 192
CfoI	GCGC	2 cut(s)	492, 585
Cfr13I	GGNCC	1 cut(s)	446
Cfr42I	CCGCGG	1 cut(s)	478
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	5 cut(s)	75, 355, 795, 799, 882
CviQI	GTAC	5 cut(s)	75, 355, 795, 799, 882
DdeI	CTNAG	7 cut(s)	174, 195, 261, 465, 657, 699, 781
DpnI	GATC	6 cut(s)	88, 218, 363, 394, 813, 819
DpnII	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
DraIII	CACNNNGTG	1 cut(s)	853
EaeI	YGGCCR	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	705
Eco105I	TACGTA	1 cut(s)	798
Eco130I	CCWWGG	3 cut(s)	65, 135, 590
Eco24I	GRGCYC	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	705
Eco57I	CTGAAG	1 cut(s)	729
Eco91I	GGTNACC	1 cut(s)	787
EcoICRI	GAGCTC	1 cut(s)	705
EcoO65I	GGTNACC	1 cut(s)	787
EcoRII	CCWGG	2 cut(s)	181, 241
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	3 cut(s)	65, 135, 590
EcoT22I	ATGCAT	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	707
ErhI	CCWWGG	3 cut(s)	65, 135, 590
FaqI	GGGAC	2 cut(s)	260, 420
FauI	CCCGC	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	817
Fnu4HI	GCNGC	8 cut(s)	47, 419, 422, 531, 677, 760, 918, 934
FokI	GGATG	3 cut(s)	271, 470, 890
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	8 cut(s)	47, 419, 422, 531, 677, 760, 918, 934
FspBI	CTAG	2 cut(s)	534, 804
GlaI	GCGC	2 cut(s)	491, 584
GluI	GCNGC	8 cut(s)	47, 419, 422, 531, 677, 760, 918, 934
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	2 cut(s)	487, 693
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	2 cut(s)	492, 585
Hin6I	GCGC	2 cut(s)	490, 583
HinP1I	GCGC	2 cut(s)	490, 583
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	5 cut(s)	107, 480, 537, 560, 832
HpaII	CCGG	2 cut(s)	487, 693
HphI	GGTGA	3 cut(s)	116, 124, 799
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	7 cut(s)	615, 702, 709, 724, 784, 845, 950
Hpy188III	TCNNGA	2 cut(s)	405, 815
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	2 cut(s)	29, 437
HpyCH4III	ACNGT	2 cut(s)	16, 378
HpyCH4IV	ACGT	1 cut(s)	797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 553, 685
HpyF3I	CTNAG	7 cut(s)	174, 195, 261, 465, 657, 699, 781
HpySE526I	ACGT	1 cut(s)	797
HspAI	GCGC	2 cut(s)	490, 583
KpnI	GGTACC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	817
KspI	CCGCGG	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	7 cut(s)	58, 405, 542, 688, 771, 920, 929
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	534, 804
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	2 cut(s)	60, 787
MalI	GATC	6 cut(s)	88, 218, 363, 394, 813, 819
MboI	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
MboII	GAAGA	1 cut(s)	563
MflI	RGATCY	3 cut(s)	86, 392, 811
MhlI	GDGCHC	2 cut(s)	194, 707
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	1 cut(s)	427
MluI	ACGCGT	2 cut(s)	409, 884
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	792
MnlI	CCTC	2 cut(s)	778, 950
Mox20I	TGGCCA	1 cut(s)	117
Mph1103I	ATGCAT	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	573, 896
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	4 cut(s)	49, 424, 477, 679
MspI	CCGG	2 cut(s)	487, 693
MspR9I	CCNGG	2 cut(s)	183, 243
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	2 cut(s)	183, 243
MvnI	CGCG	3 cut(s)	411, 477, 886
MwoI	GCNNNNNNNGC	3 cut(s)	184, 553, 685
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	787
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	1 cut(s)	556
NspV	TTCGAA	1 cut(s)	629
PasI	CCCWGGG	1 cut(s)	242
PctI	GAATGC	1 cut(s)	856
PfeI	GAWTC	4 cut(s)	107, 480, 560, 832
PflMI	CCANNNNNTGG	2 cut(s)	152, 909
PkrI	GCNGC	8 cut(s)	48, 420, 423, 532, 678, 761, 919, 935
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
Ppu21I	YACGTR	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	707
Psp6I	CCWGG	2 cut(s)	181, 241
PspEI	GGTNACC	1 cut(s)	787
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	2 cut(s)	181, 241
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	446
PsuI	RGATCY	3 cut(s)	86, 392, 811
PvuII	CAGCTG	2 cut(s)	49, 679
RsaI	GTAC	5 cut(s)	76, 356, 796, 800, 883
RsaNI	GTAC	5 cut(s)	75, 355, 795, 799, 882
RseI	CAYNNNNRTG	2 cut(s)	573, 896
SacI	GAGCTC	1 cut(s)	707
SacII	CCGCGG	1 cut(s)	478
SatI	GCNGC	8 cut(s)	47, 419, 422, 531, 677, 760, 918, 934
Sau3AI	GATC	6 cut(s)	86, 216, 361, 392, 811, 817
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	183, 243
SduI	GDGCHC	2 cut(s)	194, 707
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	435
Sfr303I	CCGCGG	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	629
SgrBI	CCGCGG	1 cut(s)	478
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	573, 896
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
SnaBI	TACGTA	1 cut(s)	798
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	5 cut(s)	78, 187, 422, 475, 477
SspMI	CTAG	2 cut(s)	534, 804
SstI	GAGCTC	1 cut(s)	707
StyD4I	CCNGG	2 cut(s)	181, 241
StyI	CCWWGG	3 cut(s)	65, 135, 590
TaaI	ACNGT	2 cut(s)	16, 378
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	1 cut(s)	629
TasI	AATT	1 cut(s)	427
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	4 cut(s)	107, 480, 560, 832
TscAI	CASTG	3 cut(s)	63, 172, 199
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	7 cut(s)	46, 418, 530, 676, 759, 917, 933
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	6 cut(s)	8, 48, 456, 563, 573, 845
TspGWI	ACGGA	2 cut(s)	342, 530
TspRI	CASTG	3 cut(s)	63, 172, 199
Van91I	CCANNNNNTGG	2 cut(s)	152, 909
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	556
XspI	CTAG	2 cut(s)	534, 804
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.