Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005317

Physical Location & Seq

Genomic Coordinates Forward (+)

12566137 .. 12572248

Gene Structure 6112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTATGCAGACTGTCTATTTCAAGGAACATGAAGGGATTACTAATCCCATGGGGCAGCTGTCATCAGCATTGTCAGGACCTTGGTGGAGTGCCTTCGGATCTCAACCGTCTTATGGAGAATCCTGTGGCCAGTCTAAACCTTTTACCATGGAACACCCCAGTAGTGGGGACCAACTCACTGCCACTAAACTTACAGGGCGAGGTACTGAACAAGGACTCGATAAAGGGAACACAAATCAGTTCACTATCTTTCCTGGGGATGGTCAAAAATCCCAGGCAGCAATCTCCCTGCAATCATCTCCGCAAAAATATCGTGCTCATTTTGAGCTGGGATTCAGCCAGCCTATGATCTGTGCAAAATATCCATATATGGATCAATGTTATGGACTCTTCTCAACATATGGACCTCAAATTTCGGGGCGCATTATGCTGCCGCTGAACTTGACTGCCGATGAAGGACCAATCTATGTAAATGCTAAGCAATACCATGGGATCATCCGACGCCGACAATCCCGTGCCAAGGCAGTCATGGAGAACAGAGCAGCTGCACTTCGTAAGCCATATATGCATGAGTCACGCCATCTTCATGCAATGCGTCGACCAAGGGGATGTGGTGGTCGTTTTCTGAACACAAAAACTATCAACAATGGGAAAAACAGAACTGAAGGGACGCAAGTTGGTGATGGACAGCTGTTTAGGCACTCTGGTTCTCATAGTTCTGAACTCCTGCAATCTGAAAGTGGAACCTTAAACTCCTCAAAGGAAACGAATGGCAGCAGTTCAAACATATCAGGGTCAGAGGTGACCAGCGTGTACTCTAGGAGAGATCTTGATCGTTTTTCCATCAATCATCTCCGTCCCTCTGTGCACTCTCTGTCAGACGTGATGGATAGTGTGCGTGGTATGGTCATTCCGACCAAATGGGTTGCAGCAGGAGATAACTGCTGCAACCTCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

322

Amino Acids

35.35

Weight (kDa)

9.43

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05690 AT3G05690 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510
fragaria_vesca	FvH4_6g20510
malus_domestica	MD12G1042100.v1.1 MD14G1041300.v1.1
prunus_persica	Prupe.7G093100_v2.0.a1 Prupe.7G093100_v2.0.a1
pyrus_communis	pycom12g03680 pycom14g03510
rosa_chinensis	RchiOBHm_Chr3g0476401
rosa_laevigata	RLG00000023772
rosa_multiflora	Rmu_sc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405310
rosa_rugosa	Rorug03G0154100 Rorug03G0154100 Rorug03G0154100 Rorug03G0154200
rosa_samantha	Rh3AG205300 Rh3BG236800 Rh3CG231300 Rh3DG231200
rosa_wichuraiana	Rw3G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	2 cut(s)	305, 437
AclWI	GGATC	3 cut(s)	109, 384, 503
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	2 cut(s)	208, 818
AfiI	CCNNNNNNNGG	5 cut(s)	116, 167, 168, 263, 523
AgsI	TTSAA	2 cut(s)	25, 786
AjiI	CACGTC	1 cut(s)	886
AjnI	CCWGG	2 cut(s)	256, 276
AluBI	AGCT	4 cut(s)	61, 331, 548, 694
AluI	AGCT	4 cut(s)	61, 331, 548, 694
Alw21I	GWGCWC	2 cut(s)	322, 873
Alw44I	GTGCAC	1 cut(s)	869
AlwI	GGATC	3 cut(s)	109, 384, 503
AoxI	GGCC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	869
ApeKI	GCWGC	8 cut(s)	58, 281, 433, 545, 548, 777, 932, 948
ApoI	RAATTY	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	4 cut(s)	80, 172, 407, 461
AsuHPI	GGTGA	2 cut(s)	695, 817
AvaII	GGWCC	4 cut(s)	80, 172, 407, 461
BaeGI	GKGCMC	1 cut(s)	873
BalI	TGGCCA	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	322, 873
BbvI	GCAGC	8 cut(s)	70, 293, 420, 535, 557, 789, 935, 944
BccI	CCATC	5 cut(s)	257, 591, 680, 854, 883
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	258, 278
BfaI	CTAG	1 cut(s)	822
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	9 cut(s)	59, 282, 434, 437, 546, 549, 778, 933, 949
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	9 cut(s)	60, 283, 435, 438, 547, 550, 779, 934, 950
Bme1390I	CCNGG	2 cut(s)	258, 278
Bme18I	GGWCC	4 cut(s)	80, 172, 407, 461
BmgBI	CACGTC	1 cut(s)	886
BmgT120I	GGNCC	4 cut(s)	80, 172, 407, 461
BmiI	GGNNCC	2 cut(s)	173, 748
BmrFI	CCNGG	2 cut(s)	258, 278
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	8 cut(s)	51, 83, 150, 257, 276, 490, 522, 605
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 167, 168, 263, 523
Bse1I	ACTGG	2 cut(s)	133, 162
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	258, 278
BseDI	CCNNGG	8 cut(s)	51, 83, 150, 257, 276, 490, 522, 605
BseGI	GGATG	3 cut(s)	268, 498, 617
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	5 cut(s)	116, 167, 168, 263, 523
BseMI	GCAATG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	133, 162
BseRI	GAGGAG	1 cut(s)	748
BseSI	GKGCMC	1 cut(s)	873
BseXI	GCAGC	8 cut(s)	70, 293, 420, 535, 557, 789, 935, 944
BseYI	CCCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	322, 873
BslFI	GGGAC	3 cut(s)	185, 685, 846
BslI	CCNNNNNNNGG	5 cut(s)	116, 167, 168, 263, 523
BsmFI	GGGAC	3 cut(s)	185, 685, 846
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	322, 873
Bsp143I	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
Bsp1720I	GCTNAGC	1 cut(s)	480
Bsp19I	CCATGG	3 cut(s)	51, 150, 490
BspACI	CCGC	2 cut(s)	305, 437
BspANI	GGCC	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	173, 748
BspPI	GGATC	3 cut(s)	109, 384, 503
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	133, 162
BssECI	CCNNGG	8 cut(s)	51, 83, 150, 257, 276, 490, 522, 605
BssMI	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	6 cut(s)	51, 83, 150, 490, 522, 605
Bst2UI	CCWGG	2 cut(s)	258, 278
Bst4CI	ACNGT	2 cut(s)	16, 111
Bst6I	CTCTTC	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	3 cut(s)	51, 150, 490
BstEII	GGTNACC	1 cut(s)	805
BstF5I	GGATG	3 cut(s)	268, 498, 617
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	6 cut(s)	104, 354, 379, 498, 832, 838
BstMBI	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	430, 568, 700
BstNI	CCWGG	2 cut(s)	258, 278
BstPI	GGTNACC	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	256, 276
BstSLI	GKGCMC	1 cut(s)	873
BstV1I	GCAGC	8 cut(s)	70, 293, 420, 535, 557, 789, 935, 944
BstX2I	RGATCY	2 cut(s)	101, 829
BstYI	RGATCY	2 cut(s)	101, 829
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	3 cut(s)	51, 150, 490
BtrI	CACGTC	1 cut(s)	886
BtsCI	GGATG	3 cut(s)	268, 498, 617
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	4 cut(s)	80, 172, 407, 461
CseI	GACGC	3 cut(s)	513, 587, 682
Csp6I	GTAC	2 cut(s)	207, 817
CviAII	CATG	7 cut(s)	32, 52, 151, 491, 532, 572, 590
CviJI	RGCY	9 cut(s)	5, 61, 132, 331, 342, 346, 548, 562, 694
CviKI_1	RGCY	9 cut(s)	5, 61, 132, 331, 342, 346, 548, 562, 694
CviQI	GTAC	2 cut(s)	207, 817
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	6 cut(s)	103, 353, 378, 497, 831, 837
DpnII	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	6 cut(s)	51, 83, 150, 490, 522, 605
Eco47I	GGWCC	4 cut(s)	80, 172, 407, 461
Eco57I	CTGAAG	1 cut(s)	687
Eco91I	GGTNACC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	80
EcoO65I	GGTNACC	1 cut(s)	805
EcoRII	CCWGG	2 cut(s)	256, 276
EcoT14I	CCWWGG	6 cut(s)	51, 83, 150, 490, 522, 605
EcoT22I	ATGCAT	1 cut(s)	573
ErhI	CCWWGG	6 cut(s)	51, 83, 150, 490, 522, 605
FaeI	CATG	7 cut(s)	35, 55, 154, 494, 535, 575, 593
FaqI	GGGAC	3 cut(s)	185, 685, 846
FatI	CATG	7 cut(s)	31, 51, 150, 490, 531, 571, 589
FauNDI	CATATG	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	9 cut(s)	59, 282, 434, 437, 546, 549, 778, 933, 949
FokI	GGATG	3 cut(s)	275, 485, 624
Fsp4HI	GCNGC	9 cut(s)	59, 282, 434, 437, 546, 549, 778, 933, 949
FspBI	CTAG	1 cut(s)	822
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	9 cut(s)	59, 282, 434, 437, 546, 549, 778, 933, 949
GsaI	CCCAGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	3 cut(s)	513, 587, 682
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	7 cut(s)	35, 55, 154, 494, 535, 575, 593
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	602
HindII	GTYRAC	1 cut(s)	602
HinfI	GANTC	5 cut(s)	122, 219, 336, 390, 575
HphI	GGTGA	2 cut(s)	695, 817
Hpy166II	GTNNAC	4 cut(s)	246, 602, 817, 871
Hpy188I	TCNGA	8 cut(s)	101, 503, 630, 724, 739, 802, 883, 918
Hpy188III	TCNNGA	2 cut(s)	78, 833
Hpy8I	GTNNAC	4 cut(s)	246, 602, 817, 871
Hpy99I	CGWCG	2 cut(s)	507, 603
HpyAV	CCTTC	4 cut(s)	29, 106, 452, 662
HpyCH4III	ACNGT	2 cut(s)	16, 111
HpyCH4IV	ACGT	1 cut(s)	885
HpyF10VI	GCNNNNNNNGC	3 cut(s)	430, 568, 700
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	885
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	7 cut(s)	35, 55, 154, 494, 535, 575, 593
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
Lsp1109I	GCAGC	8 cut(s)	70, 293, 420, 535, 557, 789, 935, 944
MaeI	CTAG	1 cut(s)	822
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	2 cut(s)	576, 805
MalI	GATC	6 cut(s)	103, 353, 378, 497, 831, 837
MboI	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
MboII	GAAGA	2 cut(s)	385, 578
MflI	RGATCY	2 cut(s)	101, 829
MhlI	GDGCHC	2 cut(s)	322, 873
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	1 cut(s)	414
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	3 cut(s)	213, 384, 584
MmeI	TCCRAC	2 cut(s)	526, 941
MnlI	CCTC	6 cut(s)	197, 420, 769, 796, 874, 965
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	573
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	752
MslI	CAYNNNNRTG	1 cut(s)	588
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	4 cut(s)	61, 439, 548, 694
MspR9I	CCNGG	2 cut(s)	258, 278
MvaI	CCWGG	2 cut(s)	258, 278
MwoI	GCNNNNNNNGC	3 cut(s)	430, 568, 700
NcoI	CCATGG	3 cut(s)	51, 150, 490
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
NlaIII	CATG	7 cut(s)	35, 55, 154, 494, 535, 575, 593
NlaIV	GGNNCC	2 cut(s)	173, 748
NmuCI	GTSAC	2 cut(s)	576, 805
NsiI	ATGCAT	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	122, 336
PkrI	GCNGC	9 cut(s)	60, 283, 435, 438, 547, 550, 779, 934, 950
PleI	GAGTC	3 cut(s)	213, 384, 583
PpsI	GAGTC	3 cut(s)	213, 384, 583
PpuMI	RGGWCCY	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	256, 276
PspEI	GGTNACC	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	2 cut(s)	256, 276
PspN4I	GGNNCC	2 cut(s)	173, 748
PspPI	GGNCC	4 cut(s)	80, 172, 407, 461
PspPPI	RGGWCCY	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	101, 829
PvuII	CAGCTG	3 cut(s)	61, 548, 694
RsaI	GTAC	2 cut(s)	208, 818
RsaNI	GTAC	2 cut(s)	207, 817
RseI	CAYNNNNRTG	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	752
SatI	GCNGC	9 cut(s)	59, 282, 434, 437, 546, 549, 778, 933, 949
Sau3AI	GATC	6 cut(s)	101, 351, 376, 495, 829, 835
Sau96I	GGNCC	4 cut(s)	80, 172, 407, 461
SchI	GAGTC	3 cut(s)	213, 384, 584
ScrFI	CCNGG	2 cut(s)	258, 278
SduI	GDGCHC	2 cut(s)	322, 873
SinI	GGWCC	4 cut(s)	80, 172, 407, 461
SmiMI	CAYNNNNRTG	1 cut(s)	588
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	2 cut(s)	305, 437
SspMI	CTAG	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	256, 276
StyI	CCWWGG	6 cut(s)	51, 83, 150, 490, 522, 605
TaaI	ACNGT	2 cut(s)	16, 111
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	2 cut(s)	222, 601
TasI	AATT	1 cut(s)	414
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	2 cut(s)	122, 336
Tru1I	TTAA	1 cut(s)	752
Tru9I	TTAA	1 cut(s)	752
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	576, 805
TseI	GCWGC	8 cut(s)	58, 281, 433, 545, 548, 777, 932, 948
Tsp45I	GTSAC	2 cut(s)	576, 805
TspDTI	ATGAA	3 cut(s)	48, 471, 578
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	1 cut(s)	187
VneI	GTGCAC	1 cut(s)	869
VpaK11BI	GGWCC	4 cut(s)	80, 172, 407, 461
XapI	RAATTY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	822
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.