Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005317

Physical Location & Seq

Genomic Coordinates Reverse (-)

2932580 .. 2936189

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03510.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTATGCAAACTGTGTATTTCAAAGAACATGAAGGAATTGCCCCTAATCCCATAGGGCAGTTTTCATCAGCATTGTCAGGGCCTTGGTGGAATGCCTTTGGATCTCAACCGGTGTATGGGGAATCCTGTGGCCAGTCGAAACCTTTTAACAGGGAACAGCCCAATACCGGGGACCATTTCACCGCCACTAAACTTGCCGGGCAGGGTACTGAACAAGAACTGGAAAAAGGGCACACAAATCTGTTCACTATCTTTCCTGGGGATGGTCAAAAGTCCCAGGCAGCAATTGGTCCGCCAGGAAAATACCGTGGTCATTTTGAGCTTGGATTCAGCCAGCCTATGATCTGTGCAAAATATCCATATATGGATCAATGCTATGGACTCTTCTCAGCTTATGGACCTCAAATCTCGGGACGCATTATGCTGCCGCTGAACTTGACTACGGATGAAGGACCAATCTATGTAAATGCCAAGCAGTACCATGGAATCATCCGTCGCCGACAATCCCGTGCCAAGGCTGTCATTGAGAACAGGGCAGCTAGACTCCGTAAGCCGTACATGCATGAATCGCGCCATCGCCATGCAATGCGCCGACCAAGAGGCTGTGGTGGTCGTTTTCTGAACACCAAGACTATGAACAATGGGAACAAGGGAACTGAAGGGAAGCAAGGTGGTGATGGGCAGCTGTTTAGGCTTTCTGGTTCTCAGAGTCCTGAAGTCCTGCAATCCGACAGTGGAACTTTAAATTCGTCAAGGGAAACAAATGGCAGCAGTTCAAACATATCCGGGTCAGAGGTGTCAAGTATGTACTCTAGGGGAGATCTTGATCGCTTTTCAATCAATCATCTCGGTCCCTCTTTGCACTCTCTGTCAAACATGATGGACAGTGCACGTGGTATGGTCATTCCGACCAAATGGGTTGCAGCAGGAGATAACCGCTGCAACCTCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

320

Amino Acids

35.07

Weight (kDa)

9.57

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05690 AT3G05690 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510
fragaria_vesca	FvH4_6g20510
malus_domestica	MD12G1042100.v1.1 MD14G1041300.v1.1
prunus_persica	Prupe.7G093100_v2.0.a1 Prupe.7G093100_v2.0.a1
pyrus_communis	pycom12g03680 pycom14g03510
rosa_chinensis	RchiOBHm_Chr3g0476401
rosa_laevigata	RLG00000023772
rosa_multiflora	Rmu_sc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405310
rosa_rugosa	Rorug03G0154100 Rorug03G0154100 Rorug03G0154100 Rorug03G0154200
rosa_samantha	Rh3AG205300 Rh3BG236800 Rh3CG231300 Rh3DG231200
rosa_wichuraiana	Rw3G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	574
AciI	CCGC	4 cut(s)	186, 296, 431, 940
AclWI	GGATC	2 cut(s)	112, 378
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	748
AcuI	CTGAAG	2 cut(s)	681, 738
AcvI	CACGTG	1 cut(s)	896
AfaI	GTAC	4 cut(s)	211, 482, 560, 812
AfiI	CCNNNNNNNGG	5 cut(s)	119, 170, 171, 266, 517
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	25, 780, 840
AjnI	CCWGG	3 cut(s)	259, 279, 298
AluBI	AGCT	4 cut(s)	325, 395, 542, 688
AluI	AGCT	4 cut(s)	325, 395, 542, 688
Alw21I	GWGCWC	1 cut(s)	895
Alw44I	GTGCAC	1 cut(s)	891
AlwI	GGATC	2 cut(s)	112, 378
Ama87I	CYCGRG	1 cut(s)	412
AoxI	GGCC	2 cut(s)	83, 133
ApaLI	GTGCAC	1 cut(s)	891
ApeKI	GCWGC	7 cut(s)	284, 427, 539, 685, 771, 926, 942
ApoI	RAATTY	1 cut(s)	748
AsiGI	ACCGGT	1 cut(s)	112
AspLEI	GCGC	2 cut(s)	576, 594
AspS9I	GGNCC	6 cut(s)	83, 175, 293, 401, 455, 854
AsuC2I	CCSGG	3 cut(s)	172, 202, 790
AsuHPI	GGTGA	2 cut(s)	175, 689
AvaI	CYCGRG	1 cut(s)	412
AvaII	GGWCC	5 cut(s)	175, 293, 401, 455, 854
BaeGI	GKGCMC	2 cut(s)	237, 895
BalI	TGGCCA	1 cut(s)	135
BbrPI	CACGTG	1 cut(s)	896
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	7 cut(s)	296, 414, 551, 697, 783, 929, 938
BccI	CCATC	4 cut(s)	260, 585, 674, 877
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	3 cut(s)	261, 281, 300
BcnI	CCSGG	3 cut(s)	172, 202, 790
BfaI	CTAG	2 cut(s)	543, 816
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	8 cut(s)	285, 428, 431, 540, 686, 772, 927, 943
BlsI	GCNGC	8 cut(s)	286, 429, 432, 541, 687, 773, 928, 944
Bme1390I	CCNGG	6 cut(s)	172, 202, 261, 281, 300, 790
Bme18I	GGWCC	5 cut(s)	175, 293, 401, 455, 854
BmeT110I	CYCGRG	1 cut(s)	412
BmgT120I	GGNCC	6 cut(s)	83, 175, 293, 401, 455, 854
BmiI	GGNNCC	2 cut(s)	176, 856
BmrFI	CCNGG	6 cut(s)	172, 202, 261, 281, 300, 790
BpuMI	CCSGG	3 cut(s)	172, 202, 790
BsaAI	YACGTR	1 cut(s)	896
BsaBI	GATNNNNATC	1 cut(s)	828
BsaJI	CCNNGG	7 cut(s)	86, 171, 260, 279, 310, 484, 516
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 170, 171, 266, 517
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	136, 228
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	828
BseBI	CCWGG	3 cut(s)	261, 281, 300
BseDI	CCNNGG	7 cut(s)	86, 171, 260, 279, 310, 484, 516
BseGI	GGATG	3 cut(s)	271, 454, 492
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	5 cut(s)	119, 170, 171, 266, 517
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	405, 722
BseNI	ACTGG	2 cut(s)	136, 228
BseSI	GKGCMC	2 cut(s)	237, 895
BseXI	GCAGC	7 cut(s)	296, 414, 551, 697, 783, 929, 938
Bsh1236I	CGCG	1 cut(s)	574
BshFI	GGCC	2 cut(s)	85, 135
BshTI	ACCGGT	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	895
BsiHKCI	CYCGRG	1 cut(s)	412
BsiSI	CCGG	4 cut(s)	113, 171, 201, 789
BslFI	GGGAC	4 cut(s)	188, 262, 429, 840
BslI	CCNNNNNNNGG	5 cut(s)	119, 170, 171, 266, 517
BsmFI	GGGAC	4 cut(s)	188, 262, 429, 840
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	85, 135
BsoBI	CYCGRG	1 cut(s)	412
Bsp1286I	GDGCHC	2 cut(s)	237, 895
Bsp143I	GATC	5 cut(s)	104, 345, 370, 823, 829
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	4 cut(s)	186, 296, 431, 940
BspANI	GGCC	2 cut(s)	85, 135
BspCNI	CTCAG	2 cut(s)	404, 721
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	176, 856
BspPI	GGATC	2 cut(s)	112, 378
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	136, 228
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	7 cut(s)	86, 171, 260, 279, 310, 484, 516
BssMI	GATC	5 cut(s)	104, 345, 370, 823, 829
BssT1I	CCWWGG	3 cut(s)	86, 484, 516
Bst2UI	CCWGG	3 cut(s)	261, 281, 300
Bst4CI	ACNGT	4 cut(s)	16, 311, 737, 890
Bst6I	CTCTTC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	896
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	391, 708
BstDSI	CCRYGG	2 cut(s)	310, 484
BstF5I	GGATG	3 cut(s)	271, 454, 492
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	2 cut(s)	576, 594
BstKTI	GATC	5 cut(s)	107, 348, 373, 826, 832
BstMBI	GATC	5 cut(s)	104, 345, 370, 823, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	562, 571, 694
BstNI	CCWGG	3 cut(s)	261, 281, 300
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	6 cut(s)	170, 200, 259, 279, 298, 788
BstSLI	GKGCMC	2 cut(s)	237, 895
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	7 cut(s)	296, 414, 551, 697, 783, 929, 938
BstX2I	RGATCY	2 cut(s)	104, 823
BstYI	RGATCY	2 cut(s)	104, 823
BsuRI	GGCC	2 cut(s)	85, 135
BtgI	CCRYGG	2 cut(s)	310, 484
BtgZI	GCGATG	1 cut(s)	563
BtsCI	GGATG	3 cut(s)	271, 454, 492
BtsIMutI	CAGTG	2 cut(s)	742, 895
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	2 cut(s)	576, 594
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	6 cut(s)	83, 175, 293, 401, 455, 854
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	4 cut(s)	210, 481, 559, 811
CspAI	ACCGGT	1 cut(s)	112
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	6 cut(s)	32, 485, 562, 566, 584, 880
CviQI	GTAC	4 cut(s)	210, 481, 559, 811
DdeI	CTNAG	2 cut(s)	391, 708
DpnI	GATC	5 cut(s)	106, 347, 372, 825, 831
DpnII	GATC	5 cut(s)	104, 345, 370, 823, 829
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	3 cut(s)	86, 484, 516
Eco47I	GGWCC	5 cut(s)	175, 293, 401, 455, 854
Eco57I	CTGAAG	2 cut(s)	681, 738
Eco72I	CACGTG	1 cut(s)	896
Eco88I	CYCGRG	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	3 cut(s)	259, 279, 298
EcoT14I	CCWWGG	3 cut(s)	86, 484, 516
EcoT22I	ATGCAT	1 cut(s)	567
ErhI	CCWWGG	3 cut(s)	86, 484, 516
FaeI	CATG	6 cut(s)	35, 488, 565, 569, 587, 883
FaqI	GGGAC	4 cut(s)	188, 262, 429, 840
FatI	CATG	6 cut(s)	31, 484, 561, 565, 583, 879
Fnu4HI	GCNGC	8 cut(s)	285, 428, 431, 540, 686, 772, 927, 943
FokI	GGATG	3 cut(s)	278, 461, 479
Fsp4HI	GCNGC	8 cut(s)	285, 428, 431, 540, 686, 772, 927, 943
FspBI	CTAG	2 cut(s)	543, 816
GlaI	GCGC	2 cut(s)	575, 593
GluI	GCNGC	8 cut(s)	285, 428, 431, 540, 686, 772, 927, 943
HaeIII	GGCC	2 cut(s)	85, 135
HapII	CCGG	4 cut(s)	113, 171, 201, 789
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	2 cut(s)	576, 594
Hin1II	CATG	6 cut(s)	35, 488, 565, 569, 587, 883
Hin6I	GCGC	2 cut(s)	574, 592
HinP1I	GCGC	2 cut(s)	574, 592
HinfI	GANTC	7 cut(s)	125, 330, 384, 489, 546, 569, 712
HpaII	CCGG	4 cut(s)	113, 171, 201, 789
HphI	GGTGA	2 cut(s)	175, 689
Hpy166II	GTNNAC	2 cut(s)	249, 893
Hpy188I	TCNGA	5 cut(s)	624, 711, 733, 796, 912
Hpy188III	TCNNGA	3 cut(s)	414, 716, 827
Hpy8I	GTNNAC	2 cut(s)	249, 893
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	29, 446, 656
HpyCH4III	ACNGT	4 cut(s)	16, 311, 737, 890
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	9 cut(s)	10, 353, 565, 587, 727, 865, 893, 926, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	562, 571, 694
HpyF3I	CTNAG	2 cut(s)	391, 708
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	6 cut(s)	35, 488, 565, 569, 587, 883
HspAI	GCGC	2 cut(s)	574, 592
Kzo9I	GATC	5 cut(s)	104, 345, 370, 823, 829
Lsp1109I	GCAGC	7 cut(s)	296, 414, 551, 697, 783, 929, 938
MaeI	CTAG	2 cut(s)	543, 816
MaeII	ACGT	1 cut(s)	895
MalI	GATC	5 cut(s)	106, 347, 372, 825, 831
MboI	GATC	5 cut(s)	104, 345, 370, 823, 829
MboII	GAAGA	1 cut(s)	379
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	2 cut(s)	104, 823
MhlI	GDGCHC	2 cut(s)	237, 895
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	39, 288, 748
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	3 cut(s)	378, 540, 721
MmeI	TCCRAC	2 cut(s)	756, 935
MnlI	CCTC	5 cut(s)	414, 596, 790, 868, 959
Mox20I	TGGCCA	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	150, 746
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	3 cut(s)	433, 688, 942
MspI	CCGG	4 cut(s)	113, 171, 201, 789
MspR9I	CCNGG	6 cut(s)	172, 202, 261, 281, 300, 790
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	3 cut(s)	261, 281, 300
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	3 cut(s)	562, 571, 694
NciI	CCSGG	3 cut(s)	172, 202, 790
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	5 cut(s)	104, 345, 370, 823, 829
NlaIII	CATG	6 cut(s)	35, 488, 565, 569, 587, 883
NlaIV	GGNNCC	2 cut(s)	176, 856
NsiI	ATGCAT	1 cut(s)	567
NspI	RCATGY	1 cut(s)	565
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	4 cut(s)	125, 330, 489, 569
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	8 cut(s)	286, 429, 432, 541, 687, 773, 928, 944
PleI	GAGTC	3 cut(s)	378, 540, 720
PmaCI	CACGTG	1 cut(s)	896
PmlI	CACGTG	1 cut(s)	896
PpsI	GAGTC	3 cut(s)	378, 540, 720
Ppu21I	YACGTR	1 cut(s)	896
Psp6I	CCWGG	3 cut(s)	259, 279, 298
PspCI	CACGTG	1 cut(s)	896
PspGI	CCWGG	3 cut(s)	259, 279, 298
PspN4I	GGNNCC	2 cut(s)	176, 856
PspPI	GGNCC	6 cut(s)	83, 175, 293, 401, 455, 854
PsuI	RGATCY	2 cut(s)	104, 823
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	4 cut(s)	211, 482, 560, 812
RsaNI	GTAC	4 cut(s)	210, 481, 559, 811
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	150, 746
SatI	GCNGC	8 cut(s)	285, 428, 431, 540, 686, 772, 927, 943
Sau3AI	GATC	5 cut(s)	104, 345, 370, 823, 829
Sau96I	GGNCC	6 cut(s)	83, 175, 293, 401, 455, 854
SchI	GAGTC	3 cut(s)	378, 540, 721
ScrFI	CCNGG	6 cut(s)	172, 202, 261, 281, 300, 790
SduI	GDGCHC	2 cut(s)	237, 895
SinI	GGWCC	5 cut(s)	175, 293, 401, 455, 854
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	3 cut(s)	39, 288, 748
SsiI	CCGC	4 cut(s)	186, 296, 431, 940
SspMI	CTAG	2 cut(s)	543, 816
StyD4I	CCNGG	6 cut(s)	170, 200, 259, 279, 298, 788
StyI	CCWWGG	3 cut(s)	86, 484, 516
TaaI	ACNGT	4 cut(s)	16, 311, 737, 890
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	1 cut(s)	140
TaqII	GACCGA	1 cut(s)	842
TasI	AATT	3 cut(s)	39, 288, 748
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	4 cut(s)	125, 330, 489, 569
Tru1I	TTAA	2 cut(s)	150, 746
Tru9I	TTAA	2 cut(s)	150, 746
TscAI	CASTG	2 cut(s)	742, 895
TseI	GCWGC	7 cut(s)	284, 427, 539, 685, 771, 926, 942
TspDTI	ATGAA	5 cut(s)	48, 57, 465, 582, 653
TspGWI	ACGGA	3 cut(s)	461, 485, 539
TspRI	CASTG	2 cut(s)	742, 895
VneI	GTGCAC	1 cut(s)	891
VpaK11BI	GGWCC	5 cut(s)	175, 293, 401, 455, 854
XapI	RAATTY	1 cut(s)	748
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	543, 816
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.