Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005317

Physical Location & Seq

Genomic Coordinates Forward (+)

1984823 .. 1987064

Gene Structure 2242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCAAACTGAGGAGCTTTTGTCGCCACCACAGACTCCTTGGTGGAATGCTTTTGGATCTCAGCCGTTGACTACAGAGAGCCTTTCCGGCGAAGCTTCTGATTCATTCACCGGAGTTAAGGCAGTTACTACGGAGGCAGAACAAGGTGTGGTGGATAAACAAACTTCTACAACTCTCTTCACTTTCTCACCTGGTGGTGAAAAGAGTTCAAGAGATGTGCCAAAGCCTCATGTTGCTTTCGCGATGCAATCAGCTTGCTTCGAGTTTGGATTTGCTCAGCCAATGATGTACACAAAGCATCCTCATGTTGAACAATACTATGGAGTTGTTTCAGCATACGGATCTCAGAGGTCTTCGGGCCGAGTAATGATTCCACTGAAGATGGAGACAGAAGAAGATGGTACCATCTATGTGAACTCAAAGCAGTACCATGGAATTATCAGGCGACGCCAGTCCCGAGCAAAGGCTGAAAAACTGAGTAGATGCCGTAAGCCATATATGCATCACTCACGCCATCTCCATGCTATGCGCCGTCCTAGAGGATCTGGCGGGCGTTTCTTGAACACCAAGACAGCTGATGCGGCTAAGCAGTCTAAGCCGAGTAATTCTCAGAGTTCTGAAGTCTTTCATCCGGAAAATGAGACCATAAACTCATCGAGGGAAGCAAATGAGTCAAATCTCTCGGATTCTGCAGTTACAAGTATGGATTACTTTCTAAGTTCGTCGGCTTATTCTCCTGGTGGCATGGTCATGCCTATCAAGTGGAATGCAGCAGCAATGGATATTGGCTGCTGCAAACTTAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

269

Amino Acids

29.79

Weight (kDa)

8.81

Isoelectric Point (pI)

64.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	40 - 91	2.9e-23	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05690 AT3G05690 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510
fragaria_vesca	FvH4_6g20510
malus_domestica	MD12G1042100.v1.1 MD14G1041300.v1.1
prunus_persica	Prupe.7G093100_v2.0.a1 Prupe.7G093100_v2.0.a1
pyrus_communis	pycom12g03680 pycom14g03510
rosa_chinensis	RchiOBHm_Chr3g0476401
rosa_laevigata	RLG00000023772
rosa_multiflora	Rmu_sc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405310
rosa_rugosa	Rorug03G0154100 Rorug03G0154100 Rorug03G0154100 Rorug03G0154200
rosa_samantha	Rh3AG205300 Rh3BG236800 Rh3CG231300 Rh3DG231200
rosa_wichuraiana	Rw3G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AccII	CGCG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	631
AciI	CCGC	2 cut(s)	549, 581
AclWI	GGATC	3 cut(s)	64, 349, 550
AcuI	CTGAAG	2 cut(s)	398, 639
AcyI	GRCGYC	1 cut(s)	448
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	290, 403, 428
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	210, 311, 562
AjnI	CCWGG	2 cut(s)	190, 736
AluBI	AGCT	4 cut(s)	16, 95, 254, 575
AluI	AGCT	4 cut(s)	16, 95, 254, 575
Alw26I	GTCTC	2 cut(s)	380, 635
AlwI	GGATC	3 cut(s)	64, 349, 550
Ama87I	CYCGRG	1 cut(s)	456
Aor13HI	TCCGGA	1 cut(s)	631
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	4 cut(s)	770, 773, 789, 792
Asp700I	GAANNNNTTC	1 cut(s)	624
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	100, 180, 209
AvaI	CYCGRG	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	776, 779, 782, 785
BccI	CCATC	4 cut(s)	376, 392, 413, 522
BceAI	ACGGC	3 cut(s)	49, 471, 516
BciT130I	CCWGG	2 cut(s)	192, 738
BcoDI	GTCTC	2 cut(s)	380, 635
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	2 cut(s)	72, 690
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	5 cut(s)	582, 771, 774, 790, 793
BlpI	GCTNAGC	2 cut(s)	276, 585
BlsI	GCNGC	5 cut(s)	583, 772, 775, 791, 794
Bme1390I	CCNGG	2 cut(s)	192, 738
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	192, 738
BmsI	GCATC	5 cut(s)	234, 307, 473, 511, 568
BoxI	GACNNNNGTC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
Bpu1102I	GCTNAGC	2 cut(s)	276, 585
BsaHI	GRCGYC	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	635
BsaJI	CCNNGG	2 cut(s)	38, 430
BsaWI	WCCGGW	2 cut(s)	110, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	192, 738
BseDI	CCNNGG	2 cut(s)	38, 430
BseGI	GGATG	2 cut(s)	298, 628
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	5 cut(s)	74, 290, 359, 467, 623
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	776, 779, 782, 785
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	3 cut(s)	87, 111, 632
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	2 cut(s)	380, 635
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	2 cut(s)	52, 772
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	635
BsoBI	CYCGRG	1 cut(s)	456
Bsp13I	TCCGGA	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	56, 341, 542
Bsp1720I	GCTNAGC	2 cut(s)	276, 585
Bsp19I	CCATGG	1 cut(s)	430
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	2 cut(s)	549, 581
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	5 cut(s)	73, 289, 358, 468, 622
BspEI	TCCGGA	1 cut(s)	631
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	3 cut(s)	64, 349, 550
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	783
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	2 cut(s)	38, 430
BssMI	GATC	3 cut(s)	56, 341, 542
BssNI	GRCGYC	1 cut(s)	448
BssT1I	CCWWGG	2 cut(s)	38, 430
Bst2UI	CCWGG	2 cut(s)	192, 738
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	256, 551
BstDEI	CTNAG	9 cut(s)	9, 60, 276, 345, 476, 585, 594, 609, 716
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	298, 628
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	3 cut(s)	59, 344, 545
BstMAI	GTCTC	2 cut(s)	380, 635
BstMBI	GATC	3 cut(s)	56, 341, 542
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 87, 499, 581, 595
BstNI	CCWGG	2 cut(s)	192, 738
BstPAI	GACNNNNGTC	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	190, 736
BstSFI	CTRYAG	2 cut(s)	72, 690
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	4 cut(s)	776, 779, 782, 785
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	56, 341, 542
BstYI	RGATCY	3 cut(s)	56, 341, 542
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	430
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	298, 628
BtsIMutI	CAGTG	1 cut(s)	374
BtuMI	TCGCGA	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	256, 551
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	1 cut(s)	456
CsiI	ACCWGGT	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	289, 402, 427
CviAII	CATG	6 cut(s)	230, 305, 431, 521, 745, 751
CviQI	GTAC	3 cut(s)	289, 402, 427
DdeI	CTNAG	9 cut(s)	9, 60, 276, 345, 476, 585, 594, 609, 716
DpnI	GATC	3 cut(s)	58, 343, 544
DpnII	GATC	3 cut(s)	56, 341, 542
DraIII	CACNNNGTG	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	38, 430
Eco31I	GGTCTC	1 cut(s)	635
Eco57I	CTGAAG	2 cut(s)	398, 639
Eco88I	CYCGRG	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	190, 736
EcoT14I	CCWWGG	2 cut(s)	38, 430
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	38, 430
FaeI	CATG	6 cut(s)	233, 308, 434, 524, 748, 754
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	6 cut(s)	229, 304, 430, 520, 744, 750
FauI	CCCGC	1 cut(s)	542
Fnu4HI	GCNGC	5 cut(s)	582, 771, 774, 790, 793
FokI	GGATG	2 cut(s)	285, 615
Fsp4HI	GCNGC	5 cut(s)	582, 771, 774, 790, 793
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	5 cut(s)	582, 771, 774, 790, 793
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	3 cut(s)	87, 111, 632
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	6 cut(s)	233, 308, 434, 524, 748, 754
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	5 cut(s)	34, 101, 370, 671, 686
HpaII	CCGG	3 cut(s)	87, 111, 632
HphI	GGTGA	3 cut(s)	100, 180, 209
Hpy166II	GTNNAC	3 cut(s)	69, 291, 415
Hpy188I	TCNGA	5 cut(s)	100, 348, 612, 619, 685
Hpy188III	TCNNGA	5 cut(s)	210, 241, 456, 559, 632
Hpy8I	GTNNAC	3 cut(s)	69, 291, 415
Hpy99I	CGWCG	2 cut(s)	450, 727
HpyCH4V	TGCA	6 cut(s)	4, 247, 502, 692, 770, 795
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 87, 499, 581, 595
HpyF3I	CTNAG	9 cut(s)	9, 60, 276, 345, 476, 585, 594, 609, 716
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	6 cut(s)	233, 308, 434, 524, 748, 754
HspAI	GCGC	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	631
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	56, 341, 542
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	4 cut(s)	776, 779, 782, 785
LweI	GCATC	5 cut(s)	234, 307, 473, 511, 568
MabI	ACCWGGT	1 cut(s)	190
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	2 cut(s)	124, 694
MalI	GATC	3 cut(s)	58, 343, 544
MboI	GATC	3 cut(s)	56, 341, 542
MboII	GAAGA	5 cut(s)	169, 345, 391, 404, 407
MflI	RGATCY	3 cut(s)	56, 341, 542
MluCI	AATT	2 cut(s)	435, 604
MlyI	GAGTC	2 cut(s)	28, 680
MnlI	CCTC	7 cut(s)	4, 127, 237, 312, 342, 533, 651
Mph1103I	ATGCAT	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	631
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	2 cut(s)	117, 801
MslI	CAYNNNNRTG	4 cut(s)	303, 410, 519, 749
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	3 cut(s)	87, 111, 632
MspR9I	CCNGG	2 cut(s)	192, 738
Mva1269I	GAATGC	2 cut(s)	52, 772
MvaI	CCWGG	2 cut(s)	192, 738
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	5 cut(s)	22, 87, 499, 581, 595
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	3 cut(s)	56, 341, 542
NlaIII	CATG	6 cut(s)	233, 308, 434, 524, 748, 754
NlaIV	GGNNCC	1 cut(s)	403
NmeAIII	GCCGAG	2 cut(s)	386, 624
NruI	TCGCGA	1 cut(s)	242
NsiI	ATGCAT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PctI	GAATGC	2 cut(s)	52, 772
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	101, 370, 686
PkrI	GCNGC	5 cut(s)	583, 772, 775, 791, 794
PleI	GAGTC	2 cut(s)	28, 679
PpsI	GAGTC	2 cut(s)	28, 679
PshAI	GACNNNNGTC	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	190, 736
PspGI	CCWGG	2 cut(s)	190, 736
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	3 cut(s)	56, 341, 542
PvuII	CAGCTG	1 cut(s)	575
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	3 cut(s)	290, 403, 428
RsaNI	GTAC	3 cut(s)	289, 402, 427
RseI	CAYNNNNRTG	4 cut(s)	303, 410, 519, 749
SaqAI	TTAA	2 cut(s)	117, 801
SatI	GCNGC	5 cut(s)	582, 771, 774, 790, 793
Sau3AI	GATC	3 cut(s)	56, 341, 542
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	28, 680
ScrFI	CCNGG	2 cut(s)	192, 738
SetI	ASST	7 cut(s)	18, 97, 148, 193, 256, 353, 577
SexAI	ACCWGGT	1 cut(s)	190
SfaNI	GCATC	5 cut(s)	234, 307, 473, 511, 568
SfcI	CTRYAG	2 cut(s)	72, 690
SmiMI	CAYNNNNRTG	4 cut(s)	303, 410, 519, 749
Sse9I	AATT	2 cut(s)	435, 604
SsiI	CCGC	2 cut(s)	549, 581
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	190, 736
StyI	CCWWGG	2 cut(s)	38, 430
TaqI	TCGA	2 cut(s)	261, 656
TasI	AATT	2 cut(s)	435, 604
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	3 cut(s)	101, 370, 686
Tru1I	TTAA	2 cut(s)	117, 801
Tru9I	TTAA	2 cut(s)	117, 801
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	4 cut(s)	770, 773, 789, 792
TspDTI	ATGAA	2 cut(s)	93, 617
TspGWI	ACGGA	2 cut(s)	146, 354
TspRI	CASTG	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.