Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000114.1

Orthogroup ID

OG0005317

Physical Location & Seq

Genomic Coordinates Forward (+)

3832 .. 8635

Gene Structure 4804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000114.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgcaaactgtttatttcaaagaacatgaaggacttgggcagttgtcatcagtgttaccttggtggggtactgcctttggatctcaacaagttcatggcgaatcctgtggccagtcaaaaccttttaccatggagcttcccaataatggagaccaacccactgccactaagaaacccgggcggggcactgaacaaggactggataaagggaacacaaatcagttcactatcttccctggggatgggaaaaaatctcagccagcgatctctctgcaatcatccccaccaaaacatcgtggtcattttgagctgggattcagccaacctatgatttgtggaaaatatccatacatggatcaatgctatggactcttctcaacatatggacctcaagttccgggacgcattatgctgccactgaatttgactacagatgaaggaccaatttatgtcaatgctaagcaataccacggaatcatccggcgccgacaatcccgtgcaaaggcagtcatggagaacagagcagctagacaccgtaagccctatatgcatgaatcacgccatcttcatgccatgcgccgaccaaggggatgtggtggtcgttttctgaataccaagacttcgaacaatgggaaaggtagaaatgaaatgaagctagttggtgatgtgcagctgtttaggcactccggttctcagagctctgaagtcctgcaatctgagagtggaactttgaactcatcaaaaacaaatggcagcagttccaacatatcaggctcagaggtgaccagtacgtactcgaggggagatcctttttcaatgaatcatcatcatctcgggccctctgtgcattatctgtcagacatgatggatggtcgtggcatggttatgcccacaaaatggattgcagcagtggataactgctgcaacctcaaagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0008150 GO:0009566 GO:0009567 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

312

Amino Acids

34.55

Weight (kDa)

9.61

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05690 AT3G05690 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510 AT5G06510
fragaria_vesca	FvH4_6g20510
malus_domestica	MD12G1042100.v1.1 MD14G1041300.v1.1
prunus_persica	Prupe.7G093100_v2.0.a1 Prupe.7G093100_v2.0.a1
pyrus_communis	pycom12g03680 pycom14g03510
rosa_chinensis	RchiOBHm_Chr3g0476401
rosa_laevigata	RLG00000023772
rosa_multiflora	Rmu_sc0000114.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405310
rosa_rugosa	Rorug03G0154100 Rorug03G0154100 Rorug03G0154100 Rorug03G0154200
rosa_samantha	Rh3AG205300 Rh3BG236800 Rh3CG231300 Rh3DG231200
rosa_wichuraiana	Rw3G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	897
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	3 cut(s)	88, 363, 800
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	484
AfaI	GTAC	3 cut(s)	70, 790, 794
AfiI	CCNNNNNNNGG	7 cut(s)	65, 146, 182, 242, 502, 586, 897
AgsI	TTSAA	3 cut(s)	19, 733, 816
AjnI	CCWGG	1 cut(s)	235
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	6 cut(s)	136, 310, 527, 655, 673, 699
AluI	AGCT	6 cut(s)	136, 310, 527, 655, 673, 699
Alw21I	GWGCWC	1 cut(s)	701
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	3 cut(s)	88, 363, 800
Ama87I	CYCGRG	3 cut(s)	176, 796, 833
AoxI	GGCC	2 cut(s)	109, 836
ApaI	GGGCCC	1 cut(s)	840
ApeKI	GCWGC	6 cut(s)	412, 524, 670, 753, 905, 921
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	2 cut(s)	486, 579
AspS9I	GGNCC	4 cut(s)	386, 440, 836, 837
AsuC2I	CCSGG	3 cut(s)	177, 178, 399
AsuHPI	GGTGA	2 cut(s)	674, 793
AsuII	TTCGAA	1 cut(s)	623
AvaI	CYCGRG	3 cut(s)	176, 796, 833
AvaII	GGWCC	2 cut(s)	386, 440
BaeGI	GKGCMC	2 cut(s)	188, 840
BalI	TGGCCA	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	2 cut(s)	701, 840
Bbv12I	GWGCWC	1 cut(s)	701
BbvI	GCAGC	6 cut(s)	399, 536, 682, 765, 908, 917
BccI	CCATC	4 cut(s)	236, 570, 859, 863
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	3 cut(s)	177, 178, 399
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	528, 656
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	487
BisI	GCNGC	6 cut(s)	413, 525, 671, 754, 906, 922
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	6 cut(s)	414, 526, 672, 755, 907, 923
Bme1390I	CCNGG	4 cut(s)	177, 178, 237, 399
Bme18I	GGWCC	2 cut(s)	386, 440
BmeT110I	CYCGRG	3 cut(s)	176, 796, 833
BmgT120I	GGNCC	4 cut(s)	386, 440, 836, 837
BmiI	GGNNCC	2 cut(s)	485, 838
BmrFI	CCNGG	4 cut(s)	177, 178, 237, 399
Bpu1102I	GCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	3 cut(s)	177, 178, 399
BsaAI	YACGTR	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	7 cut(s)	59, 129, 176, 235, 236, 469, 584
BsaWI	WCCGGW	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	7 cut(s)	65, 146, 182, 242, 502, 586, 897
Bse1I	ACTGG	3 cut(s)	112, 204, 786
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	7 cut(s)	59, 129, 176, 235, 236, 469, 584
BseGI	GGATG	5 cut(s)	247, 278, 477, 596, 874
BseLI	CCNNNNNNNGG	7 cut(s)	65, 146, 182, 242, 502, 586, 897
BseMII	CTCAG	4 cut(s)	269, 707, 708, 789
BseNI	ACTGG	3 cut(s)	112, 204, 786
BseSI	GKGCMC	2 cut(s)	188, 840
BseXI	GCAGC	6 cut(s)	399, 536, 682, 765, 908, 917
BseYI	CCCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	2 cut(s)	111, 838
BshNI	GGYRCC	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	701
BsiHKCI	CYCGRG	3 cut(s)	176, 796, 833
BsiSI	CCGG	4 cut(s)	177, 398, 481, 687
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	7 cut(s)	65, 146, 182, 242, 502, 586, 897
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	111, 838
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	3 cut(s)	176, 796, 833
Bsp119I	TTCGAA	1 cut(s)	623
Bsp120I	GGGCCC	1 cut(s)	836
Bsp1286I	GDGCHC	3 cut(s)	188, 701, 840
Bsp143I	GATC	4 cut(s)	80, 264, 355, 805
Bsp1720I	GCTNAGC	1 cut(s)	459
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	111, 838
BspCNI	CTCAG	4 cut(s)	268, 706, 709, 788
BspLI	GGNNCC	2 cut(s)	485, 838
BspPI	GGATC	3 cut(s)	88, 363, 800
BspT104I	TTCGAA	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	144
BsrI	ACTGG	3 cut(s)	112, 204, 786
BssECI	CCNNGG	7 cut(s)	59, 129, 176, 235, 236, 469, 584
BssMI	GATC	4 cut(s)	80, 264, 355, 805
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	3 cut(s)	59, 129, 584
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	10, 536
Bst6I	CTCTTC	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	792
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	6 cut(s)	168, 255, 459, 693, 717, 775
BstDSI	CCRYGG	2 cut(s)	129, 469
BstEII	GGTNACC	1 cut(s)	781
BstF5I	GGATG	5 cut(s)	247, 278, 477, 596, 874
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	486, 579
BstKTI	GATC	4 cut(s)	83, 267, 358, 808
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	80, 264, 355, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	547, 679, 844
BstNI	CCWGG	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	781
BstSCI	CCNGG	4 cut(s)	175, 176, 235, 397
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	2 cut(s)	188, 840
BstSNI	TACGTA	1 cut(s)	792
BstV1I	GCAGC	6 cut(s)	399, 536, 682, 765, 908, 917
BstX2I	RGATCY	2 cut(s)	80, 805
BstYI	RGATCY	2 cut(s)	80, 805
BsuRI	GGCC	2 cut(s)	111, 838
BtgI	CCRYGG	2 cut(s)	129, 469
BtsCI	GGATG	5 cut(s)	247, 278, 477, 596, 874
BtsI	GCAGTG	2 cut(s)	159, 915
BtsIMutI	CAGTG	5 cut(s)	57, 159, 186, 416, 915
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	2 cut(s)	486, 579
Cfr13I	GGNCC	4 cut(s)	386, 440, 836, 837
Cfr9I	CCCGGG	1 cut(s)	176
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	69, 789, 793
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviQI	GTAC	3 cut(s)	69, 789, 793
DdeI	CTNAG	6 cut(s)	168, 255, 459, 693, 717, 775
DinI	GGCGCC	1 cut(s)	485
DpnI	GATC	4 cut(s)	82, 266, 357, 807
DpnII	GATC	4 cut(s)	80, 264, 355, 805
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	699
Eco105I	TACGTA	1 cut(s)	792
Eco130I	CCWWGG	3 cut(s)	59, 129, 584
Eco24I	GRGCYC	2 cut(s)	701, 840
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	386, 440
Eco53kI	GAGCTC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	723
Eco88I	CYCGRG	3 cut(s)	176, 796, 833
Eco91I	GGTNACC	1 cut(s)	781
EcoICRI	GAGCTC	1 cut(s)	699
EcoO109I	RGGNCCY	1 cut(s)	837
EcoO65I	GGTNACC	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	3 cut(s)	59, 129, 584
EcoT22I	ATGCAT	1 cut(s)	552
EcoT38I	GRGCYC	2 cut(s)	701, 840
EgeI	GGCGCC	1 cut(s)	485
EheI	GGCGCC	1 cut(s)	485
ErhI	CCWWGG	3 cut(s)	59, 129, 584
FaqI	GGGAC	1 cut(s)	414
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	6 cut(s)	413, 525, 671, 754, 906, 922
FokI	GGATG	5 cut(s)	254, 265, 464, 603, 881
FriOI	GRGCYC	2 cut(s)	701, 840
Fsp4HI	GCNGC	6 cut(s)	413, 525, 671, 754, 906, 922
FspBI	CTAG	2 cut(s)	528, 656
GlaI	GCGC	2 cut(s)	485, 578
GluI	GCNGC	6 cut(s)	413, 525, 671, 754, 906, 922
GsaI	CCCAGC	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	111, 838
HapII	CCGG	4 cut(s)	177, 398, 481, 687
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	486, 579
Hin1I	GRCGYC	1 cut(s)	484
Hin6I	GCGC	2 cut(s)	484, 577
HinP1I	GCGC	2 cut(s)	484, 577
HinfI	GANTC	6 cut(s)	101, 315, 369, 474, 554, 820
HpaII	CCGG	4 cut(s)	177, 398, 481, 687
HphI	GGTGA	2 cut(s)	674, 793
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	7 cut(s)	609, 696, 703, 718, 778, 859, 938
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	23, 431
HpyCH4III	ACNGT	2 cut(s)	10, 536
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	9 cut(s)	4, 274, 500, 550, 670, 712, 847, 905, 924
HpyF10VI	GCNNNNNNNGC	3 cut(s)	547, 679, 844
HpyF3I	CTNAG	6 cut(s)	168, 255, 459, 693, 717, 775
HpySE526I	ACGT	1 cut(s)	791
Hsp92I	GRCGYC	1 cut(s)	484
HspAI	GCGC	2 cut(s)	484, 577
KasI	GGCGCC	1 cut(s)	483
Kzo9I	GATC	4 cut(s)	80, 264, 355, 805
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	6 cut(s)	399, 536, 682, 765, 908, 917
MaeI	CTAG	2 cut(s)	528, 656
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	2 cut(s)	54, 781
MalI	GATC	4 cut(s)	82, 266, 357, 807
MboI	GATC	4 cut(s)	80, 264, 355, 805
MboII	GAAGA	3 cut(s)	223, 364, 557
MflI	RGATCY	2 cut(s)	80, 805
MhlI	GDGCHC	3 cut(s)	188, 701, 840
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	2 cut(s)	421, 444
MluNI	TGGCCA	1 cut(s)	111
Mly113I	GGCGCC	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	786
MnlI	CCTC	5 cut(s)	399, 772, 792, 850, 938
Mox20I	TGGCCA	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	567, 884
Msp20I	TGGCCA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	673
MspI	CCGG	4 cut(s)	177, 398, 481, 687
MspR9I	CCNGG	4 cut(s)	177, 178, 237, 399
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	547, 679, 844
NarI	GGCGCC	1 cut(s)	484
NciI	CCSGG	3 cut(s)	177, 178, 399
NcoI	CCATGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	4 cut(s)	80, 264, 355, 805
NlaIV	GGNNCC	2 cut(s)	485, 838
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	552
NspV	TTCGAA	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	796
PasI	CCCWGGG	1 cut(s)	236
PfeI	GAWTC	5 cut(s)	101, 315, 474, 554, 820
PflMI	CCANNNNNTGG	1 cut(s)	897
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	6 cut(s)	414, 526, 672, 755, 907, 923
PleI	GAGTC	1 cut(s)	363
PluTI	GGCGCC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	781
PspFI	CCCAGC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	485, 838
PspOMI	GGGCCC	1 cut(s)	836
PspPI	GGNCC	4 cut(s)	386, 440, 836, 837
PspXI	VCTCGAGB	1 cut(s)	796
PsuI	RGATCY	2 cut(s)	80, 805
PvuII	CAGCTG	1 cut(s)	673
RsaI	GTAC	3 cut(s)	70, 790, 794
RsaNI	GTAC	3 cut(s)	69, 789, 793
RseI	CAYNNNNRTG	2 cut(s)	567, 884
SacI	GAGCTC	1 cut(s)	701
SatI	GCNGC	6 cut(s)	413, 525, 671, 754, 906, 922
Sau3AI	GATC	4 cut(s)	80, 264, 355, 805
Sau96I	GGNCC	4 cut(s)	386, 440, 836, 837
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	4 cut(s)	177, 178, 237, 399
SduI	GDGCHC	3 cut(s)	188, 701, 840
SfcI	CTRYAG	1 cut(s)	429
SfoI	GGCGCC	1 cut(s)	485
Sfr274I	CTCGAG	1 cut(s)	796
SfuI	TTCGAA	1 cut(s)	623
SinI	GGWCC	2 cut(s)	386, 440
SlaI	CTCGAG	1 cut(s)	796
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	567, 884
SmlI	CTYRAG	2 cut(s)	390, 796
SmoI	CTYRAG	2 cut(s)	390, 796
SnaBI	TACGTA	1 cut(s)	792
Sse9I	AATT	2 cut(s)	421, 444
SsiI	CCGC	1 cut(s)	181
SspDI	GGCGCC	1 cut(s)	483
SspMI	CTAG	2 cut(s)	528, 656
SstI	GAGCTC	1 cut(s)	701
StyD4I	CCNGG	4 cut(s)	175, 176, 235, 397
StyI	CCWWGG	3 cut(s)	59, 129, 584
TaaI	ACNGT	2 cut(s)	10, 536
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	2 cut(s)	623, 797
TasI	AATT	2 cut(s)	421, 444
TfiI	GAWTC	5 cut(s)	101, 315, 474, 554, 820
TscAI	CASTG	5 cut(s)	57, 166, 193, 423, 915
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	6 cut(s)	412, 524, 670, 753, 905, 921
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	8 cut(s)	42, 83, 450, 557, 567, 660, 665, 833
TspGWI	ACGGA	1 cut(s)	486
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	5 cut(s)	57, 166, 193, 423, 915
Van91I	CCANNNNNTGG	1 cut(s)	897
VpaK11BI	GGWCC	2 cut(s)	386, 440
XapI	RAATTY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	796
XmaI	CCCGGG	1 cut(s)	176
XspI	CTAG	2 cut(s)	528, 656
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.