AT3G06010
NAC Family

ATP-dependent DNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011969
Physical Location & Seq
Reverse (-)
1802141 .. 1807530
5390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06010.1

Sequence Viewer

Length: 3309 bp
ATGGTGGCTCAGCAGCTCCAAGAGAGATGCGGCGGCACTTCTCAAGAAGATCCAGTTGAGACCACCAAGTCTCTGATCTGTGCTCTCAATTACATTTCTCGTGACCTTCCTTTGCCTCCTCACCTCTTCACCGCCGTTTCTTCAATCTACCATGGCGCTTCTTCTTCTTCTCTCTCTGACTCCGATGTCTCTCCGCCGCTACCTACTTCGCCGCCTGCGAATAAAGCTCCCTATGGAGCTGATTTGATGGGTGAATTCGAGGATGCACTTTTGAAGCAGAGACCAGATTGTGAATCAGGCTCTCGATTGATACAATTACTGGATAATCGGAATAAGAGTCATATCCAACGCCGCTTATCTGAACTTGAAGAATTACCTTCTACTAGAGGTGAAGATTTGCAGGCAAAGTGCTTACTTGAGCTTTATGGGCTTAAGCTACGGGAATTGCAAGGCAAGGTTCGAACCGCGGTGAGCTCGGAATTCTGGCTACGTCTGAACTGTGCAGATGTCAGTAGCCAAGTATTTGACTGGGGCATGATGCGGTTGCCTCGTCCATTTTATGGGGTTGGAGATCCTTTTGCTATGGAAGCTGATGATCAGTTCAGAAAGAAGCGTGACGCTGAGAGGTTATCACGTTTAGAAGAAGAGGAGAAGAATCTGATTGAAACTGCCAAGAGGAAATTCTTTGCAGAAGTACTCAATGCAGTACGTGAATTCCAGTTGCAAATTCAGGCGACTCAAAAACGCCGTAGGCAAAGGAATGATGGTGTGCAGGCTTGGCATGGGAGACAAAGACAACGCGCTACCCGTGCTGAAAAGTTGAGGCTCATGGCCCTTAAGTCCGATGATCAAGAGGCATACATGAAACTAGTAAAGGAGAGTAAAAATGAAAGACTAACCACTCTTTTAGAGGAGACAAACAAACTCCTTGCTAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATGCTAAACTTCCGGAAGGCATTGATCTACTTAAAGACTCAGAATCTGACTTGTCTGAACTTGATGCTCCAAGAAGTGAACCATTGCAGGATCTGCTTCCTGATCAGGATATAGATATTACTGAGTCTGACAATAACGATGACTCTAATGATTTACTAGAAGGACAGAGGCAGTATAACTCGGCTATCCATTCAATACAAGAGAAGGTGACGGAGCAGCCCTCGCTTCTAGAAGGTGGGGAACTACGATCCTATCAATTAGAAGGGCTTCAATGGATGGTTTCTCTATTCAACAATAACCTCAATGGAATATTAGCTGATGAGATGGGTTTGGGAAAAACTATTCAAACAATTTCTCTGATTGCGTATCTTCTGGAGAATAAAGGTGTGCCTGGGCCTTATCTTATAGTTGCTCCAAAAGCTGTGCTACCAAATTGGGTAAACGAGTTTGCAACATGGGTACCAAGCATTGCAGCTTTTCTGTATGATGGACGTTTAGAGGAAAGGAAAGCAATAAGGGAAAAAATTGCAGGAGAAGGAAAATTTAATGTGTTGATAACCCATTATGATCTTATCATGAGAGATAAAGCATTTTTAAAGAAAATTGAGTGGTACTACATGATTGTTGATGAAGGACATCGGCTGAAGAACCACGAATCTGCTCTAGCAAAGACTTTATTAACAGGCTATCGTATAAAACGCAGACTTCTGTTGACCGGGACACCCATACAGAATAGCCTTCAAGAACTATGGTCATTGCTTAATTTTCTCCTTCCTCACATCTTTAACTCGGTTCAGAACTTCGAGGAATGGTTTAATGCTCCTTTCGCTGACCGTGGTAATGTCAGTCTCACGGATGAAGAGGAGCTCTTGATTATTCACCGCCTGCATCATGTTATAAGGCCGTTTATACTGAGAAGGAAAAAGGACGAAGTAGAGAAATTCCTTCCTGGAAAGACACAGGTCATATTGAAGTGTGATATGTCGGCGTGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCCTTCAAACAGGATCTGGGAAATCAAAGAGTCTGCAAAATCTAACGATGCAATTAAGAAAGTGTTGTAACCATCCTTATCTATTTGTTGGAGGAGACTACAATATGTGGAAGAAACCTGAGATTGTGAGAGCTTCAGGGAAATTTGAACTCCTTGATCGTCTCCTTCCAAAACTGCGCAAGGCTGGACATAGGATTCTTCTCTTCTCCCAAATGACCCGTCTCATTGACGTTCTTGAGATATACTTGACACTTAATGATTACAAATACCTTAGACTCGATGGTACCACAAAGACAGATCAAAGAGGGCTTTTACTGAAGCAATTCAACGAGCCAGATTCTCCCTACTTTATGTTTCTTTTGAGCACGCGTGCTGGAGGTCTCGGTTTGAACTTGCAAACTGCAGACACTGTTATTATCTTTGACAGTGATTGGAACCCACAAATGGACCAACAGGCCGAGGATCGAGCTCATCGCATAGGGCAGAAGAAGGAAGTCAGAGTGTTTGTTTTGGTTAGCGTTGGCTCTGTTGAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATTGACGCCAAAGTCATACAAGCTGGACTTTTCAACACAACTTCCACTGCACAAGACAGAAGAGAGATGCTTGAAGAGATTATGCGTAAAGGAACAAGCTCGCTCGGGACAGATGTCCCCAGTGAGAGAGAAATAAACCGGCTAGCGGCTCGTAGTGAGGATGAATTTTGGATGTTTGAGCGAATGGATGAGGAGAGACGAAGGAAGGAGAATTACAGAGCCCGTCTGATGCAAGAGCAAGAAGTCCCTGAGTGGGCGTACACTACTCAGACCCAAGAGGAGAAGTTGAACAACGGAAAGTTCCATTTTGGTAGTGTCACAGGTAAGCGAAAACGTAAAGAGATTGTTTACAGCGACACACTAAGCGAGTTACAGTGGCTGAAAGCCGTGGAGAGCGGTGAAGACCTGTCAAAACTCTCAATGAGATATAATAGGAGAGAGGAGAACGCAAGCAACACAAAGACATCAACGAGCAAAAAAGTGATAGAATCTATCCAAACTGTGAGTGATGGGACGAGCGAGGAGGATGAAGAAGAGCAAGAAGAAGAAAGAGCGAAGGAGATGAGTGGAAAACAGAGAGTGGACAAGTCTGAAGAGGAAGAAGAAGAAGGTGAAGAAGAGAATGATGGAAAGGCAATATTCAAGTGGAATACTCATAAGAAGAAAAGGTCTAGATACTCTTTTACGTGTTCTTCGTCTGACTCTAGAGCTCAAAGTTCCAATGGAAGTAGACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

1102

Amino Acids

126.73

Weight (kDa)

6.17

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 402 - 564 3.4e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 406 - 694 2.1e-93 SNF2-related domain
HDA2-3 PF11496 675 - 853 1.4e-08 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 714 - 827 1.4e-24 Helicase conserved C-terminal domain
SnAC PF14619 916 - 983 9.9e-13 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1862
AasI GACNNNNNNGTC 3 cut(s) 67, 185, 2579
Acc16I TGCGCA 1 cut(s) 2177
Acc65I GGTACC 2 cut(s) 1423, 2282
AccB1I GGYRCC 2 cut(s) 1423, 2282
AccB7I CCANNNNNTGG 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 2964
AccI GTMKAC 1 cut(s) 3298
AccII CGCG 3 cut(s) 467, 801, 2368
AccIII TCCGGA 1 cut(s) 976
AclWI GGATC 6 cut(s) 44, 566, 1062, 1206, 2020, 2469
AcsI RAATTY 9 cut(s) 254, 479, 680, 713, 726, 1505, 1904, 2141, 2732
AcuI CTGAAG 4 cut(s) 1628, 2118, 2336, 3180
AcyI GRCGYC 1 cut(s) 2574
AfaI GTAC 6 cut(s) 696, 708, 1425, 1577, 2284, 2828
AfiI CCNNNNNNNGG 4 cut(s) 560, 2443, 2713, 2821
AflII CTTAAG 2 cut(s) 431, 836
AflIII ACRYGT 2 cut(s) 2366, 3254
AhlI ACTAGT 1 cut(s) 868
AjnI CCWGG 2 cut(s) 1354, 1912
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AloI GAACNNNNNNTCC 2 cut(s) 933, 965
Alw21I GWGCWC 6 cut(s) 85, 476, 1833, 2366, 2470, 3280
AlwI GGATC 6 cut(s) 44, 566, 1062, 1206, 2020, 2469
AlwNI CAGNNNCTG 5 cut(s) 1010, 1057, 2015, 2408, 2947
Ama87I CYCGRG 1 cut(s) 2672
Aor13HI TCCGGA 1 cut(s) 976
AoxI GGCC 5 cut(s) 831, 1358, 1865, 1999, 2454
ApeKI GCWGC 4 cut(s) 13, 944, 1180, 1436
ApoI RAATTY 9 cut(s) 254, 479, 680, 713, 726, 1505, 1904, 2141, 2732
ArsI GACNNNNNNTTYG 2 cut(s) 2203, 2235
Asp700I GAANNNNTTC 2 cut(s) 1230, 2321
Asp718I GGTACC 2 cut(s) 1423, 2282
AspLEI GCGC 3 cut(s) 158, 803, 2178
AspS9I GGNCC 3 cut(s) 832, 1358, 2446
AsuC2I CCSGG 1 cut(s) 1681
AsuHPI GGTGA 9 cut(s) 113, 121, 263, 401, 481, 1183, 1835, 2978, 3191
AsuII TTCGAA 1 cut(s) 460
AsuNHI GCTAGC 1 cut(s) 2710
AvaI CYCGRG 1 cut(s) 2672
AvaII GGWCC 1 cut(s) 2446
BaeI ACNNNNGTAYC 2 cut(s) 1407, 1440
BanI GGYRCC 2 cut(s) 1423, 2282
BanII GRGCYC 5 cut(s) 476, 1833, 2470, 2791, 3280
BarI GAAGNNNNNNTAC 2 cut(s) 2765, 2797
BauI CACGAG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 2976
Bbv12I GWGCWC 6 cut(s) 85, 476, 1833, 2366, 2470, 3280
BbvI GCAGC 4 cut(s) 25, 931, 1192, 1448
BceAI ACGGC 4 cut(s) 119, 732, 1852, 2939
BciT130I CCWGG 2 cut(s) 1356, 1914
BclI TGATCA 3 cut(s) 595, 847, 1066
BcnI CCSGG 1 cut(s) 1681
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 8 cut(s) 384, 869, 1121, 1193, 1628, 2711, 3240, 3273
BfmI CTRYAG 1 cut(s) 2400
BfoI RGCGCY 1 cut(s) 159
BfrI CTTAAG 2 cut(s) 431, 836
BlpI GCTNAGC 1 cut(s) 9
BmcAI AGTACT 1 cut(s) 696
Bme1390I CCNGG 3 cut(s) 1356, 1681, 1914
Bme18I GGWCC 1 cut(s) 2446
BmeT110I CYCGRG 1 cut(s) 2672
BmgT120I GGNCC 3 cut(s) 832, 1358, 2446
BmiI GGNNCC 3 cut(s) 1425, 2284, 2435
BmrFI CCNGG 3 cut(s) 1356, 1681, 1914
BmrI ACTGGG 2 cut(s) 538, 2682
BmsI GCATC 9 cut(s) 17, 253, 528, 955, 1018, 1861, 2037, 2625, 2787
BmtI GCTAGC 1 cut(s) 2714
BmuI ACTGGG 2 cut(s) 538, 2682
BoxI GACNNNNGTC 2 cut(s) 1925, 2681
BpiI GAAGAC 1 cut(s) 2976
BplI GAGNNNNNCTC 2 cut(s) 1169, 1201
BpmI CTGGAG 2 cut(s) 1358, 2394
Bpu1102I GCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 3 cut(s) 27, 437, 2255
BpuMI CCSGG 1 cut(s) 1681
BsaAI YACGTR 2 cut(s) 710, 3255
BsaHI GRCGYC 1 cut(s) 2574
BsaI GGTCTC 3 cut(s) 53, 274, 2384
BsaJI CCNNGG 6 cut(s) 151, 465, 1355, 1798, 2457, 2955
BsaWI WCCGGW 1 cut(s) 976
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bsc4I CCNNNNNNNGG 4 cut(s) 560, 2443, 2713, 2821
Bse118I RCCGGY 1 cut(s) 2706
Bse1I ACTGG 5 cut(s) 53, 324, 533, 718, 2688
Bse3DI GCAATG 3 cut(s) 1046, 1431, 1718
BseAI TCCGGA 1 cut(s) 976
BseBI CCWGG 2 cut(s) 1356, 1914
BseDI CCNNGG 6 cut(s) 151, 465, 1355, 1798, 2457, 2955
BseGI GGATG 8 cut(s) 268, 1245, 1825, 2071, 2734, 2745, 2761, 3100
BseLI CCNNNNNNNGG 4 cut(s) 560, 2443, 2713, 2821
BseMI GCAATG 3 cut(s) 1046, 1431, 1718
BseMII CTCAG 8 cut(s) 23, 612, 1017, 1077, 1868, 2109, 2808, 2849
BseNI ACTGG 5 cut(s) 53, 324, 533, 718, 2688
BseRI GAGGAG 9 cut(s) 108, 662, 926, 1841, 2106, 2774, 2861, 3023, 3104
BseXI GCAGC 4 cut(s) 25, 931, 1192, 1448
BsgI GTGCAG 3 cut(s) 522, 791, 2601
Bsh1236I CGCG 3 cut(s) 467, 801, 2368
BshFI GGCC 5 cut(s) 833, 1360, 1867, 2001, 2456
BshNI GGYRCC 2 cut(s) 1423, 2282
BsiHKAI GWGCWC 6 cut(s) 85, 476, 1833, 2366, 2470, 3280
BsiHKCI CYCGRG 1 cut(s) 2672
BsiSI CCGG 3 cut(s) 977, 1680, 2707
BslFI GGGAC 5 cut(s) 1696, 2669, 2689, 2798, 3094
BslI CCNNNNNNNGG 4 cut(s) 560, 2443, 2713, 2821
BsmBI CGTCTC 3 cut(s) 2165, 2225, 2758
BsmFI GGGAC 5 cut(s) 1696, 2669, 2689, 2798, 3094
BsnI GGCC 5 cut(s) 833, 1360, 1867, 2001, 2456
Bso31I GGTCTC 3 cut(s) 53, 274, 2384
BsoBI CYCGRG 1 cut(s) 2672
Bsp119I TTCGAA 1 cut(s) 460
Bsp1286I GDGCHC 7 cut(s) 85, 476, 1833, 2366, 2470, 2791, 3280
Bsp13I TCCGGA 1 cut(s) 976
Bsp1720I GCTNAGC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 151
BspANI GGCC 5 cut(s) 833, 1360, 1867, 2001, 2456
BspCNI CTCAG 8 cut(s) 22, 613, 1016, 1078, 1869, 2110, 2809, 2848
BspEI TCCGGA 1 cut(s) 976
BspFNI CGCG 3 cut(s) 467, 801, 2368
BspHI TCATGA 1 cut(s) 1539
BspLI GGNNCC 3 cut(s) 1425, 2284, 2435
BspMAI CTGCAG 1 cut(s) 2404
BspOI GCTAGC 1 cut(s) 2714
BspPI GGATC 6 cut(s) 44, 566, 1062, 1206, 2020, 2469
BspQI GCTCTTC 1 cut(s) 3096
BspT104I TTCGAA 1 cut(s) 460
BspT107I GGYRCC 2 cut(s) 1423, 2282
BspTI CTTAAG 2 cut(s) 431, 836
BspTNI GGTCTC 3 cut(s) 53, 274, 2384
BsrBI CCGCTC 1 cut(s) 2964
BsrDI GCAATG 3 cut(s) 1046, 1431, 1718
BsrFI RCCGGY 1 cut(s) 2706
BsrI ACTGG 5 cut(s) 53, 324, 533, 718, 2688
BssAI RCCGGY 1 cut(s) 2706
BssECI CCNNGG 6 cut(s) 151, 465, 1355, 1798, 2457, 2955
BssNI GRCGYC 1 cut(s) 2574
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 1356, 1914
Bst4CI ACNGT 6 cut(s) 500, 1799, 2410, 2426, 2943, 3070
Bst6I CTCTTC 9 cut(s) 131, 639, 1818, 2207, 2623, 2637, 3096, 3156, 3180
BstACI GRCGYC 1 cut(s) 2574
BstAFI CTTAAG 2 cut(s) 431, 836
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstBAI YACGTR 2 cut(s) 710, 3255
BstBI TTCGAA 1 cut(s) 460
BstDSI CCRYGG 4 cut(s) 151, 465, 1798, 2955
BstF5I GGATG 8 cut(s) 268, 1245, 1825, 2071, 2734, 2745, 2761, 3100
BstFNI CGCG 3 cut(s) 467, 801, 2368
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 3 cut(s) 158, 803, 2178
BstNI CCWGG 2 cut(s) 1356, 1914
BstPAI GACNNNNGTC 2 cut(s) 1925, 2681
BstSCI CCNGG 3 cut(s) 1354, 1679, 1912
BstSFI CTRYAG 1 cut(s) 2400
BstUI CGCG 3 cut(s) 467, 801, 2368
BstV1I GCAGC 4 cut(s) 25, 931, 1192, 1448
BstV2I GAAGAC 1 cut(s) 2976
BstX2I RGATCY 4 cut(s) 49, 571, 1054, 2012
BstYI RGATCY 4 cut(s) 49, 571, 1054, 2012
BsuRI GGCC 5 cut(s) 833, 1360, 1867, 2001, 2456
BtgI CCRYGG 4 cut(s) 151, 465, 1798, 2955
BtgZI GCGATG 1 cut(s) 2456
BtsCI GGATG 8 cut(s) 268, 1245, 1825, 2071, 2734, 2745, 2761, 3100
BtsI GCAGTG 1 cut(s) 2613
BtsIMutI CAGTG 5 cut(s) 2406, 2431, 2613, 2695, 2948
CaiI CAGNNNCTG 5 cut(s) 1010, 1057, 2015, 2408, 2947
CciI TCATGA 1 cut(s) 1539
CfoI GCGC 3 cut(s) 158, 803, 2178
Cfr10I RCCGGY 1 cut(s) 2706
Cfr13I GGNCC 3 cut(s) 832, 1358, 2446
Cfr42I CCGCGG 1 cut(s) 468
CseI GACGC 2 cut(s) 626, 2582
Csp6I GTAC 6 cut(s) 695, 707, 1424, 1576, 2283, 2827
CviQI GTAC 6 cut(s) 695, 707, 1424, 1576, 2283, 2827
DraI TTTAAA 1 cut(s) 1560
DrdI GACNNNNNNGTC 3 cut(s) 67, 185, 2579
DseDI GACNNNNNNGTC 3 cut(s) 67, 185, 2579
Eam1104I CTCTTC 9 cut(s) 131, 639, 1818, 2207, 2623, 2637, 3096, 3156, 3180
EarI CTCTTC 9 cut(s) 131, 639, 1818, 2207, 2623, 2637, 3096, 3156, 3180
EciI GGCGGA 1 cut(s) 183
Ecl136II GAGCTC 4 cut(s) 474, 1831, 2468, 3278
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 5 cut(s) 476, 1833, 2470, 2791, 3280
Eco31I GGTCTC 3 cut(s) 53, 274, 2384
Eco47I GGWCC 1 cut(s) 2446
Eco53kI GAGCTC 4 cut(s) 474, 1831, 2468, 3278
Eco57I CTGAAG 4 cut(s) 1628, 2118, 2336, 3180
Eco88I CYCGRG 1 cut(s) 2672
EcoICRI GAGCTC 4 cut(s) 474, 1831, 2468, 3278
EcoRI GAATTC 3 cut(s) 254, 479, 713
EcoRII CCWGG 2 cut(s) 1354, 1912
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 5 cut(s) 476, 1833, 2470, 2791, 3280
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 3 cut(s) 2165, 2225, 2758
FalI AAGNNNNNCTT 2 cut(s) 2580, 2612
FaqI GGGAC 5 cut(s) 1696, 2669, 2689, 2798, 3094
FbaI TGATCA 3 cut(s) 595, 847, 1066
FblI GTMKAC 1 cut(s) 3298
FokI GGATG 8 cut(s) 275, 1252, 1832, 2058, 2741, 2752, 2768, 3107
FriOI GRGCYC 5 cut(s) 476, 1833, 2470, 2791, 3280
FspBI CTAG 8 cut(s) 384, 869, 1121, 1193, 1628, 2711, 3240, 3273
FspI TGCGCA 1 cut(s) 2177
GlaI GCGC 3 cut(s) 157, 802, 2177
GsuI CTGGAG 2 cut(s) 1358, 2394
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 5 cut(s) 833, 1360, 1867, 2001, 2456
HapII CCGG 3 cut(s) 977, 1680, 2707
HgaI GACGC 2 cut(s) 626, 2582
HhaI GCGC 3 cut(s) 158, 803, 2178
Hin1I GRCGYC 1 cut(s) 2574
Hin6I GCGC 3 cut(s) 156, 801, 2176
HinP1I GCGC 3 cut(s) 156, 801, 2176
HincII GTYRAC 1 cut(s) 1677
HindII GTYRAC 1 cut(s) 1677
HpaII CCGG 3 cut(s) 977, 1680, 2707
HphI GGTGA 9 cut(s) 113, 121, 263, 401, 481, 1183, 1835, 2978, 3191
Hpy166II GTNNAC 7 cut(s) 1043, 1405, 1677, 2829, 2917, 3151, 3299
Hpy8I GTNNAC 7 cut(s) 1043, 1405, 1677, 2829, 2917, 3151, 3299
HpyCH4III ACNGT 6 cut(s) 500, 1799, 2410, 2426, 2943, 3070
HpyCH4IV ACGT 8 cut(s) 490, 634, 709, 955, 1456, 2229, 2902, 3254
HpySE526I ACGT 8 cut(s) 490, 634, 709, 955, 1456, 2229, 2902, 3254
Hsp92I GRCGYC 1 cut(s) 2574
HspAI GCGC 3 cut(s) 156, 801, 2176
Kpn2I TCCGGA 1 cut(s) 976
KpnI GGTACC 2 cut(s) 1427, 2286
Ksp22I TGATCA 3 cut(s) 595, 847, 1066
KspI CCGCGG 1 cut(s) 468
LguI GCTCTTC 1 cut(s) 3096
Lsp1109I GCAGC 4 cut(s) 25, 931, 1192, 1448
LweI GCATC 9 cut(s) 17, 253, 528, 955, 1018, 1861, 2037, 2625, 2787
MaeI CTAG 8 cut(s) 384, 869, 1121, 1193, 1628, 2711, 3240, 3273
MaeII ACGT 8 cut(s) 490, 634, 709, 955, 1456, 2229, 2902, 3254
MaeIII GTNAC 7 cut(s) 101, 614, 1171, 1978, 2066, 2884, 2937
MbiI CCGCTC 1 cut(s) 2964
MflI RGATCY 4 cut(s) 49, 571, 1054, 2012
MhlI GDGCHC 7 cut(s) 85, 476, 1833, 2366, 2470, 2791, 3280
MluI ACGCGT 1 cut(s) 2366
MlyI GAGTC 9 cut(s) 173, 346, 730, 995, 1097, 1100, 2038, 2268, 3263
MmeI TCCRAC 3 cut(s) 370, 547, 2068
MroI TCCGGA 1 cut(s) 976
MroXI GAANNNNTTC 2 cut(s) 1230, 2321
MspA1I CMGCKG 1 cut(s) 467
MspCI CTTAAG 2 cut(s) 431, 836
MspI CCGG 3 cut(s) 977, 1680, 2707
MspR9I CCNGG 3 cut(s) 1356, 1681, 1914
MvaI CCWGG 2 cut(s) 1356, 1914
MvnI CGCG 3 cut(s) 467, 801, 2368
NciI CCSGG 1 cut(s) 1681
NcoI CCATGG 1 cut(s) 151
NheI GCTAGC 1 cut(s) 2710
NlaIV GGNNCC 3 cut(s) 1425, 2284, 2435
NmeAIII GCCGAG 2 cut(s) 1124, 2482
NmuCI GTSAC 4 cut(s) 101, 614, 1171, 2884
NsbI TGCGCA 1 cut(s) 2177
NspV TTCGAA 1 cut(s) 460
PagI TCATGA 1 cut(s) 1539
PciSI GCTCTTC 1 cut(s) 3096
PcsI WCGNNNNNNNCGW 3 cut(s) 215, 805, 3260
PdmI GAANNNNTTC 2 cut(s) 1230, 2321
PfeI GAWTC 7 cut(s) 293, 655, 1007, 1619, 2194, 2336, 3056
PflMI CCANNNNNTGG 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 1912
PleI GAGTC 9 cut(s) 173, 345, 730, 995, 1096, 1100, 2037, 2268, 3263
PpsI GAGTC 9 cut(s) 173, 345, 730, 995, 1096, 1100, 2037, 2268, 3263
Ppu21I YACGTR 2 cut(s) 710, 3255
PshAI GACNNNNGTC 2 cut(s) 1925, 2681
PsiI TTATAA 1 cut(s) 1862
Psp124BI GAGCTC 4 cut(s) 476, 1833, 2470, 3280
Psp6I CCWGG 2 cut(s) 1354, 1912
PspGI CCWGG 2 cut(s) 1354, 1912
PspN4I GGNNCC 3 cut(s) 1425, 2284, 2435
PspPI GGNCC 3 cut(s) 832, 1358, 2446
PstI CTGCAG 1 cut(s) 2404
PstNI CAGNNNCTG 5 cut(s) 1010, 1057, 2015, 2408, 2947
PsuI RGATCY 4 cut(s) 49, 571, 1054, 2012
RsaI GTAC 6 cut(s) 696, 708, 1425, 1577, 2284, 2828
RsaNI GTAC 6 cut(s) 695, 707, 1424, 1576, 2283, 2827
SacI GAGCTC 4 cut(s) 476, 1833, 2470, 3280
SacII CCGCGG 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 3096
Sau96I GGNCC 3 cut(s) 832, 1358, 2446
ScaI AGTACT 1 cut(s) 696
SchI GAGTC 9 cut(s) 173, 346, 730, 995, 1097, 1100, 2038, 2268, 3263
ScrFI CCNGG 3 cut(s) 1356, 1681, 1914
SduI GDGCHC 7 cut(s) 85, 476, 1833, 2366, 2470, 2791, 3280
SfaNI GCATC 9 cut(s) 17, 253, 528, 955, 1018, 1861, 2037, 2625, 2787
SfcI CTRYAG 1 cut(s) 2400
Sfr303I CCGCGG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 460
SgrBI CCGCGG 1 cut(s) 468
SinI GGWCC 1 cut(s) 2446
SmlI CTYRAG 5 cut(s) 42, 416, 431, 836, 2234
SmoI CTYRAG 5 cut(s) 42, 416, 431, 836, 2234
SpeI ACTAGT 1 cut(s) 868
SspI AATATT 3 cut(s) 1275, 2541, 3207
SspMI CTAG 8 cut(s) 384, 869, 1121, 1193, 1628, 2711, 3240, 3273
SstI GAGCTC 4 cut(s) 476, 1833, 2470, 3280
StyD4I CCNGG 3 cut(s) 1354, 1679, 1912
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 6 cut(s) 500, 1799, 2410, 2426, 2943, 3070
TaiI ACGT 8 cut(s) 493, 637, 712, 958, 1459, 2232, 2905, 3257
TaqI TCGA 6 cut(s) 258, 304, 460, 1767, 2277, 2464
TatI WGTACW 1 cut(s) 694
TauI GCSGC 6 cut(s) 33, 36, 199, 214, 354, 2717
TfiI GAWTC 7 cut(s) 293, 655, 1007, 1619, 2194, 2336, 3056
TscAI CASTG 5 cut(s) 2413, 2431, 2620, 2695, 2948
TseFI GTSAC 4 cut(s) 101, 614, 1171, 2884
TseI GCWGC 4 cut(s) 13, 944, 1180, 1436
Tsp45I GTSAC 4 cut(s) 101, 614, 1171, 2884
TspDTI ATGAA 6 cut(s) 878, 903, 1608, 1836, 2745, 3111
TspGWI ACGGA 3 cut(s) 1190, 1832, 2877
TspRI CASTG 5 cut(s) 2413, 2431, 2620, 2695, 2948
Van91I CCANNNNNTGG 1 cut(s) 560
Vha464I CTTAAG 2 cut(s) 431, 836
VpaK11BI GGWCC 1 cut(s) 2446
XapI RAATTY 9 cut(s) 254, 479, 680, 713, 726, 1505, 1904, 2141, 2732
XbaI TCTAGA 3 cut(s) 1192, 3239, 3272
XmiI GTMKAC 1 cut(s) 3298
XmnI GAANNNNTTC 2 cut(s) 1230, 2321
XspI CTAG 8 cut(s) 384, 869, 1121, 1193, 1628, 2711, 3240, 3273
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.