FvH4_4g14970
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011969
Physical Location & Seq
Forward (+)
18563411 .. 18570737
7327 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14970.t1

Sequence Viewer

Length: 3108 bp
ATGGCTCAGCTGGAGAGCCTGGACCTCATTACCAAGACCAAGTCTCTGATCTCGGCCCTCAACCTCGTCTCCCGTGACCTCCCTCTCCCTCCTGACCTCTTCGACGTCGTTTCGTCCATTTACCACTCCCCCCAGGATGATGGTGATAGTTGTGGAGGAGGTGATTTGTTGGGGGACCTTGAGGATGCACTTTTGAACCAAAGGCATAAGTGCAGTTCGGGTGCTGGATTGATTGAGTCTGGGGAGAAGCGTTTCCAGGGCCGGCTTAAGCAGAGATTGGCCCAGCTTGAAGAATTACCTTCGAGTAGAGGAGAGGACCTGCAGACCAAGTGCTTGCTTGAATTCTATGGGCTGAAGCTCGCAGAATTGCAAAACAAGGTGCGGTCTGATGTGAGTTCAGAATACTTGCTCCAAATGAGCTGCGCATCTCCTGACAAAACACTGTTTGACTGGGGAAGGATGAGATTGCCCCGTCCACTCTATGGTGTTGGAGATGCTTTTGCCTTGGAGTCTGACGATCAGTTCAGGAAGAAACGAGATGCTGAGAGGCTCTTAAGGTTACAAGAGGAGGAGAAGAATAATATTGAGACTAGAAAAAGAAAATTTTTCACAGAAGTGCTTAATGGTGTTCGTGAATACCAATTGCAAGTTCAGGCATCTATGGCTCGTCGAAAACGAAGGAATGATTTTGTCCAGGGGTGGCATGCAAAGCAAAAACAACGTGCTACGCGAGCTGAGAAATTGAGGTTCCAAGCCTTGAAGTCGGATGACCAGGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAGAGATTGACATTACTCCTTGAAGAAACAAATAAACTCCTTGTCAATTTGGGAGCTGCGGTCCAACGTCAGAAAGATGCTAAACAGACAGAGGGCATTGAAGCCTTAAAAGACTCAGAAGGTGAGTTGACTGAGGTGGACGAGGATTTGGACATCACTGAATCTGATCGCAATGATGATAGTAGTGACTTGCTTAAAGGTCAGCGGCAGTATAACTCAGCCATCCATTCTATCCAGGAACAGGTAACTGAGCAACCTTCTATGCTTGAAGGTGGAGAGTTAAGGCCCTACCAGTTAGAGGGTCTTCAATGGATGCTCTCCTTGTTCAATAACAATCTGAACGGTATATTGGCTGATGAGATGGGATTGGGTAAAACTATACAAACCATTTCATTGATTGCGTATCTCATTGAAAACAAGGGTGTCACTGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTATTACCAAATTGGGTTACTGAATTTGCAACATGGGCTCCTAGTATTAAGGCAGTTCTTTATGACGGGCGCCAAGAGGAAAGAAAGGCAATGAAGGAAGAATTATCAGGGGAAGGAAAATTTAATGTGTTGATCACACATTATGACCTTATCATGAGGGATAAACAATTTTTGAAGAAGATTAGCTGGGCTTACCTGATCGTTGATGAAGGGCATCGTTTGAAGAATTCTGAGTGTGCTCTCGCTATCACGCTTGCAGGCTATGACATGAGACGTAGACTTCTATTGACTGGCACACCAATACAGAATAGCTTGCAGGAGTTATGGTCCCTACTAAATTTTCTTCTCCCACACATTTTCAATTCAGTTCAGAATTTTGAGGAATGGTTTAATGCACCTTTTGCGGATCGGGGTGATATGGCTCTTACTGAGGAAGAACAGCTATTGATCATCCGACGTCTACATCATGTTATAAGGCCATTCATATTAAGGAGGAAAAAAGATGAGGTTGAAAAATTCCTTCCTGGAAAATCCCAAGTTATACTGAAATGTGACATGTCATCATGGCAGAAAGTATATTATCGACAAGTTACAGATGTGGGCAGGGTCGGGCTAGATAATGGTTCGGGGAAATCAAAGAGCTTGCAGAACCTAACCATGCAACTCAGAAAGTGTTGCAACCACCCGTACCTTTTTGTCGTGGGAGATTATAACATCTGGCGTCAGGAGGAGATCGTAAGAGCATCAGGAAAATTTGAACTACTTGATCGTCTTCTCCCAAAGCTCCAAAAAGCAGGGCACAGAGTCTTGCTTTTTTCACAAATGACTCGCCTGATGGACATTCTTGAAGTTTATCTGCAGCTTCACCATTTCCAGTATCTTCGATTGGATGGTTCAACAAAAACTGAGGAAAGAGGAACTCTGCTAAAGAGATTCAATGCCCCAGACTCTCCTTACTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAATCCGCAGATACAGTTATAATTTTTGATAGTGATTGGAATCCTCAGATGGACCAACAGGCAGAGGATCGAGCCCATCGTATAGGTCAAAAGAAAGAAGTGAGGGTATTTGTGTTGGTTAGTGTTGGATCCATTGAAGAAGTAATTTTGGAGCGTGCTAAACAGAAGATGGGCATAGATGCCAAGGTCATCCAAGCCGGACTGTTTAATACAACTTCCACAGCCCAGGACAGAAGAGATATGTTGGAGGAAATCATGCGTAAGGGTACAAGTTCACTTGGGGCTGATGTGCCAAGCGAGAGAGAAATCAACCGCCTTGCTGCCAGATCGGATGATGAGTTCCGGATGTTTGAGAAAATGGATGCAGAGAGAAGGCAAAAGGAGAATTACAGATCTCGCCTTATGGAAGAGCATGAGGTTCCCGAGTGGGCATATTCAGCACCTGATAAGGTTACAGCTTCCAAAGGATTTGATTATAGCAACGTCTCAGGAAAACGACCAAGGAAGGAGGTACGTTCTTATGCTGATGGCCTTAGTGATTTACAGTTTATGAAAGCTGTAGAAAGCGGGGAAGATGTATCAATGTTTTCTGGCAAAGGAAAGAGAAGAAATCCTTTTCCATCTAAGAGCAGTGTTGTACCGTTGAATGAAAATGTGCCGGTGGTCAGTGTAAGTGAAGATACATATGATTTGAGCCCACCTTCAAAGAAACACAAGTCTGAAGGGCCAAATATAGTGAAACACGAAAGTCATGCAGGAGTTTTCCAGATAACTAGAAAGAAGAGATCAAATTCATCCTTCGACAGTAAAGGCCGAAGTTCCAATGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

1036

Amino Acids

118.3

Weight (kDa)

7.9

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 363 - 524 3.7e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 367 - 654 6.3e-93 SNF2-related domain
HDA2-3 PF11496 635 - 813 2.2e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 674 - 787 1.1e-25 Helicase conserved C-terminal domain
SnAC PF14619 878 - 942 1e-08 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1742, 1980, 2294
AatII GACGTC 2 cut(s) 108, 1729
Acc16I TGCGCA 1 cut(s) 424
Acc36I ACCTGC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 1338
AccB7I CCANNNNNTGG 1 cut(s) 482
AccI GTMKAC 2 cut(s) 1546, 1729
AccII CGCG 1 cut(s) 730
AccIII TCCGGA 1 cut(s) 2616
AciI CCGC 7 cut(s) 382, 869, 1015, 1673, 2280, 2587, 2841
AclWI GGATC 4 cut(s) 1683, 2349, 2397, 2410
AcuI CTGAAG 2 cut(s) 374, 3015
AcyI GRCGYC 4 cut(s) 105, 1339, 1726, 1990
AfaI GTAC 4 cut(s) 1958, 2542, 2787, 2913
AfiI CCNNNNNNNGG 3 cut(s) 482, 1051, 1108
AflII CTTAAG 2 cut(s) 266, 553
AflIII ACRYGT 1 cut(s) 1824
AjnI CCWGG 8 cut(s) 18, 132, 255, 693, 771, 1044, 1792, 2499
AjuI GAANNNNNNNTTGG 4 cut(s) 633, 665, 1142, 1174
AleI CACNNNNGTG 1 cut(s) 614
AloI GAACNNNNNNTCC 4 cut(s) 2261, 2293, 2597, 2629
Alw21I GWGCWC 2 cut(s) 1510, 2246
Alw26I GTCTC 5 cut(s) 48, 73, 581, 1534, 2764
AlwI GGATC 4 cut(s) 1683, 2349, 2397, 2410
AlwNI CAGNNNCTG 1 cut(s) 2717
Ama87I CYCGRG 1 cut(s) 2696
Aor13HI TCCGGA 1 cut(s) 2616
AoxI GGCC 9 cut(s) 54, 259, 279, 1094, 1241, 1745, 2803, 2999, 3085
ApaI GGGCCC 1 cut(s) 1245
ApeKI GCWGC 4 cut(s) 420, 866, 2128, 2594
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 2 cut(s) 425, 1341
AsuHPI GGTGA 5 cut(s) 155, 173, 944, 1694, 2126
AvaI CYCGRG 1 cut(s) 2696
AvaII GGWCC 6 cut(s) 22, 175, 316, 871, 1596, 2326
BaeGI GKGCMC 2 cut(s) 1245, 2070
BamHI GGATCC 1 cut(s) 2402
BanI GGYRCC 1 cut(s) 1338
BanII GRGCYC 4 cut(s) 1245, 1309, 2350, 2972
BauI CACGAG 1 cut(s) 2247
BbsI GAAGAC 2 cut(s) 1106, 2033
Bbv12I GWGCWC 2 cut(s) 1510, 2246
BbvI GCAGC 4 cut(s) 407, 853, 2140, 2581
BcgI CGANNNNNNTGC 2 cut(s) 3008, 3042
BciT130I CCWGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
BclI TGATCA 2 cut(s) 1401, 1716
BcoDI GTCTC 5 cut(s) 48, 73, 581, 1534, 2764
BfaI CTAG 4 cut(s) 591, 1311, 1883, 3048
BfmI CTRYAG 3 cut(s) 320, 2126, 2832
BfoI RGCGCY 1 cut(s) 1342
BfrI CTTAAG 2 cut(s) 266, 553
BfuAI ACCTGC 1 cut(s) 327
BglII AGATCT 1 cut(s) 2666
BisI GCNGC 5 cut(s) 421, 867, 1016, 2129, 2595
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 5 cut(s) 422, 868, 1017, 2130, 2596
Bme1390I CCNGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
Bme18I GGWCC 6 cut(s) 22, 175, 316, 871, 1596, 2326
BmeT110I CYCGRG 1 cut(s) 2696
BmrFI CCNGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
BmrI ACTGGG 2 cut(s) 460, 1248
BmuI ACTGGG 2 cut(s) 460, 1248
BpiI GAAGAC 2 cut(s) 1106, 2033
BpmI CTGGAG 2 cut(s) 32, 2274
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 200, 2260
BsaBI GATNNNNATC 1 cut(s) 2313
BsaHI GRCGYC 4 cut(s) 105, 1339, 1726, 1990
BsaJI CCNNGG 7 cut(s) 132, 256, 504, 694, 2457, 2499, 2774
BsaWI WCCGGW 1 cut(s) 2616
BsaXI ACNNNNNCTCC 8 cut(s) 53, 83, 855, 885, 1291, 1321, 1580, 1610
Bsc4I CCNNNNNNNGG 3 cut(s) 482, 1051, 1108
Bse118I RCCGGY 2 cut(s) 261, 2932
Bse1I ACTGG 5 cut(s) 455, 1102, 1243, 1564, 2143
Bse3DI GCAATG 2 cut(s) 988, 1365
Bse8I GATNNNNATC 1 cut(s) 2313
BseAI TCCGGA 1 cut(s) 2616
BseBI CCWGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
BseDI CCNNGG 7 cut(s) 132, 256, 504, 694, 2457, 2499, 2774
BseJI GATNNNNATC 1 cut(s) 2313
BseLI CCNNNNNNNGG 3 cut(s) 482, 1051, 1108
BseMI GCAATG 2 cut(s) 988, 1365
BseNI ACTGG 5 cut(s) 455, 1102, 1243, 1564, 2143
BseRI GAGGAG 5 cut(s) 171, 324, 581, 584, 2012
BseSI GKGCMC 2 cut(s) 1245, 2070
BseXI GCAGC 4 cut(s) 407, 853, 2140, 2581
BseYI CCCAGC 2 cut(s) 282, 1455
BsgI GTGCAG 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 730
BshFI GGCC 9 cut(s) 56, 261, 281, 1096, 1243, 1747, 2805, 3001, 3087
BshNI GGYRCC 1 cut(s) 1338
BsiHKAI GWGCWC 2 cut(s) 1510, 2246
BsiHKCI CYCGRG 1 cut(s) 2696
BsiSI CCGG 4 cut(s) 262, 2472, 2617, 2933
BslFI GGGAC 2 cut(s) 188, 1582
BslI CCNNNNNNNGG 3 cut(s) 482, 1051, 1108
BsmAI GTCTC 5 cut(s) 48, 73, 581, 1534, 2764
BsmBI CGTCTC 3 cut(s) 73, 1534, 2764
BsmFI GGGAC 2 cut(s) 188, 1582
BsnI GGCC 9 cut(s) 56, 261, 281, 1096, 1243, 1747, 2805, 3001, 3087
BsoBI CYCGRG 1 cut(s) 2696
Bsp120I GGGCCC 1 cut(s) 1241
Bsp1286I GDGCHC 7 cut(s) 1245, 1309, 1510, 2070, 2246, 2350, 2972
Bsp13I TCCGGA 1 cut(s) 2616
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 7 cut(s) 382, 869, 1015, 1673, 2280, 2587, 2841
BspANI GGCC 9 cut(s) 56, 261, 281, 1096, 1243, 1747, 2805, 3001, 3087
BspEI TCCGGA 1 cut(s) 2616
BspFNI CGCG 1 cut(s) 730
BspHI TCATGA 1 cut(s) 1422
BspMAI CTGCAG 2 cut(s) 324, 2130
BspMI ACCTGC 1 cut(s) 327
BspPI GGATC 4 cut(s) 1683, 2349, 2397, 2410
BspQI GCTCTTC 1 cut(s) 2676
BspT107I GGYRCC 1 cut(s) 1338
BspTI CTTAAG 2 cut(s) 266, 553
BsrDI GCAATG 2 cut(s) 988, 1365
BsrFI RCCGGY 2 cut(s) 261, 2932
BsrI ACTGG 5 cut(s) 455, 1102, 1243, 1564, 2143
BssAI RCCGGY 2 cut(s) 261, 2932
BssECI CCNNGG 7 cut(s) 132, 256, 504, 694, 2457, 2499, 2774
BssNI GRCGYC 4 cut(s) 105, 1339, 1726, 1990
BssSI CACGAG 1 cut(s) 2247
BssT1I CCWWGG 3 cut(s) 504, 2457, 2774
Bst2BI CACGAG 1 cut(s) 2247
Bst2UI CCWGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
Bst4CI ACNGT 7 cut(s) 444, 1154, 2290, 2478, 2820, 2916, 3080
Bst6I CTCTTC 4 cut(s) 104, 2503, 2676, 3050
BstACI GRCGYC 4 cut(s) 105, 1339, 1726, 1990
BstAFI CTTAAG 2 cut(s) 266, 553
BstAPI GCANNNNNTGC 1 cut(s) 1670
BstFNI CGCG 1 cut(s) 730
BstH2I RGCGCY 1 cut(s) 1342
BstHHI GCGC 2 cut(s) 425, 1341
BstMAI GTCTC 5 cut(s) 48, 73, 581, 1534, 2764
BstMWI GCNNNNNNNGC 7 cut(s) 662, 709, 731, 1265, 1304, 1670, 2711
BstNI CCWGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
BstNSI RCATGY 2 cut(s) 707, 1828
BstSCI CCNGG 8 cut(s) 18, 132, 255, 693, 771, 1044, 1792, 2499
BstSFI CTRYAG 3 cut(s) 320, 2126, 2832
BstSLI GKGCMC 2 cut(s) 1245, 2070
BstUI CGCG 1 cut(s) 730
BstV1I GCAGC 4 cut(s) 407, 853, 2140, 2581
BstV2I GAAGAC 2 cut(s) 1106, 2033
BstX2I RGATCY 2 cut(s) 2402, 2666
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 2 cut(s) 2402, 2666
BsuRI GGCC 9 cut(s) 56, 261, 281, 1096, 1243, 1747, 2805, 3001, 3087
BtsI GCAGTG 1 cut(s) 2911
BtsIMutI CAGTG 5 cut(s) 440, 966, 1236, 2911, 2947
BveI ACCTGC 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 2717
CciI TCATGA 1 cut(s) 1422
CfoI GCGC 2 cut(s) 425, 1341
Cfr10I RCCGGY 2 cut(s) 261, 2932
CseI GACGC 1 cut(s) 1979
Csp6I GTAC 4 cut(s) 1957, 2541, 2786, 2912
CviQI GTAC 4 cut(s) 1957, 2541, 2786, 2912
DinI GGCGCC 1 cut(s) 1340
Eam1104I CTCTTC 4 cut(s) 104, 2503, 2676, 3050
EarI CTCTTC 4 cut(s) 104, 2503, 2676, 3050
Eco130I CCWWGG 3 cut(s) 504, 2457, 2774
Eco24I GRGCYC 4 cut(s) 1245, 1309, 2350, 2972
Eco47I GGWCC 6 cut(s) 22, 175, 316, 871, 1596, 2326
Eco57I CTGAAG 2 cut(s) 374, 3015
Eco88I CYCGRG 1 cut(s) 2696
EcoO109I RGGNCCY 4 cut(s) 175, 316, 1095, 1242
EcoRI GAATTC 2 cut(s) 341, 1495
EcoRII CCWGG 8 cut(s) 18, 132, 255, 693, 771, 1044, 1792, 2499
EcoT14I CCWWGG 3 cut(s) 504, 2457, 2774
EcoT38I GRGCYC 4 cut(s) 1245, 1309, 2350, 2972
EgeI GGCGCC 1 cut(s) 1340
EheI GGCGCC 1 cut(s) 1340
ErhI CCWWGG 3 cut(s) 504, 2457, 2774
Esp3I CGTCTC 3 cut(s) 73, 1534, 2764
FalI AAGNNNNNCTT 2 cut(s) 2872, 2904
FaqI GGGAC 2 cut(s) 188, 1582
FauI CCCGC 1 cut(s) 2834
FauNDI CATATG 1 cut(s) 2959
FbaI TGATCA 2 cut(s) 1401, 1716
FblI GTMKAC 2 cut(s) 1546, 1729
Fnu4HI GCNGC 5 cut(s) 421, 867, 1016, 2129, 2595
FriOI GRGCYC 4 cut(s) 1245, 1309, 2350, 2972
Fsp4HI GCNGC 5 cut(s) 421, 867, 1016, 2129, 2595
FspBI CTAG 4 cut(s) 591, 1311, 1883, 3048
FspI TGCGCA 1 cut(s) 424
GlaI GCGC 2 cut(s) 424, 1340
GluI GCNGC 5 cut(s) 421, 867, 1016, 2129, 2595
GsaI CCCAGC 2 cut(s) 286, 1459
GsuI CTGGAG 2 cut(s) 32, 2274
HaeII RGCGCY 1 cut(s) 1342
HaeIII GGCC 9 cut(s) 56, 261, 281, 1096, 1243, 1747, 2805, 3001, 3087
HapII CCGG 4 cut(s) 262, 2472, 2617, 2933
HgaI GACGC 1 cut(s) 1979
HhaI GCGC 2 cut(s) 425, 1341
Hin1I GRCGYC 4 cut(s) 105, 1339, 1726, 1990
Hin6I GCGC 2 cut(s) 423, 1339
HinP1I GCGC 2 cut(s) 423, 1339
HincII GTYRAC 1 cut(s) 939
HindII GTYRAC 1 cut(s) 939
HinfI GANTC 9 cut(s) 236, 509, 923, 971, 2073, 2095, 2202, 2216, 2314
HpaII CCGG 4 cut(s) 262, 2472, 2617, 2933
HphI GGTGA 5 cut(s) 155, 173, 944, 1694, 2126
Hpy166II GTNNAC 6 cut(s) 476, 939, 949, 1547, 1730, 2549
Hpy8I GTNNAC 6 cut(s) 476, 939, 949, 1547, 1730, 2549
Hpy99I CGWCG 4 cut(s) 107, 110, 672, 1728
HpyCH4III ACNGT 7 cut(s) 444, 1154, 2290, 2478, 2820, 2916, 3080
HpyCH4IV ACGT 7 cut(s) 105, 721, 877, 1543, 1726, 2757, 2788
HpyF10VI GCNNNNNNNGC 7 cut(s) 662, 709, 731, 1265, 1304, 1670, 2711
HpySE526I ACGT 7 cut(s) 105, 721, 877, 1543, 1726, 2757, 2788
Hsp92I GRCGYC 4 cut(s) 105, 1339, 1726, 1990
HspAI GCGC 2 cut(s) 423, 1339
KasI GGCGCC 1 cut(s) 1338
Kpn2I TCCGGA 1 cut(s) 2616
KroI GCCGGC 1 cut(s) 261
KroNI GCCGGC 1 cut(s) 263
Ksp22I TGATCA 2 cut(s) 1401, 1716
LguI GCTCTTC 1 cut(s) 2676
LmnI GCTCC 6 cut(s) 414, 863, 1264, 1312, 2058, 2425
Lsp1109I GCAGC 4 cut(s) 407, 853, 2140, 2581
MaeI CTAG 4 cut(s) 591, 1311, 1883, 3048
MaeII ACGT 7 cut(s) 105, 721, 877, 1543, 1726, 2757, 2788
MaeIII GTNAC 9 cut(s) 74, 558, 995, 1054, 1234, 1285, 1820, 1858, 2725
MfeI CAATTG 1 cut(s) 641
MflI RGATCY 2 cut(s) 2402, 2666
MhlI GDGCHC 7 cut(s) 1245, 1309, 1510, 2070, 2246, 2350, 2972
Mly113I GGCGCC 1 cut(s) 1339
MlyI GAGTC 6 cut(s) 245, 518, 917, 2082, 2089, 2210
MmeI TCCRAC 6 cut(s) 469, 744, 898, 1747, 2380, 2499
MroI TCCGGA 1 cut(s) 2616
MroNI GCCGGC 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 251
MslI CAYNNNNRTG 2 cut(s) 614, 788
MspA1I CMGCKG 2 cut(s) 10, 1015
MspCI CTTAAG 2 cut(s) 266, 553
MspI CCGG 4 cut(s) 262, 2472, 2617, 2933
MspR9I CCNGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
MunI CAATTG 1 cut(s) 641
MvaI CCWGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
MvnI CGCG 1 cut(s) 730
MwoI GCNNNNNNNGC 7 cut(s) 662, 709, 731, 1265, 1304, 1670, 2711
NaeI GCCGGC 1 cut(s) 263
NarI GGCGCC 1 cut(s) 1339
NdeI CATATG 1 cut(s) 2959
NgoMIV GCCGGC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 4 cut(s) 74, 995, 1234, 1820
NsbI TGCGCA 1 cut(s) 424
NspI RCATGY 2 cut(s) 707, 1828
OliI CACNNNNGTG 1 cut(s) 614
PaeI GCATGC 1 cut(s) 707
PagI TCATGA 1 cut(s) 1422
PciI ACATGT 1 cut(s) 1824
PciSI GCTCTTC 1 cut(s) 2676
PcsI WCGNNNNNNNCGW 3 cut(s) 673, 727, 2350
PdiI GCCGGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 971, 2202, 2314
PflFI GACNNNGTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 482
PfoI TCCNGGA 2 cut(s) 1044, 1792
PkrI GCNGC 5 cut(s) 422, 868, 1017, 2130, 2596
PleI GAGTC 6 cut(s) 244, 517, 917, 2081, 2089, 2210
PluTI GGCGCC 1 cut(s) 1342
PpsI GAGTC 6 cut(s) 244, 517, 917, 2081, 2089, 2210
PpuMI RGGWCCY 2 cut(s) 175, 316
PscI ACATGT 1 cut(s) 1824
PsiI TTATAA 3 cut(s) 1742, 1980, 2294
Psp5II RGGWCCY 2 cut(s) 175, 316
Psp6I CCWGG 8 cut(s) 18, 132, 255, 693, 771, 1044, 1792, 2499
PspFI CCCAGC 2 cut(s) 282, 1455
PspGI CCWGG 8 cut(s) 18, 132, 255, 693, 771, 1044, 1792, 2499
PspOMI GGGCCC 1 cut(s) 1241
PspPPI RGGWCCY 2 cut(s) 175, 316
PstI CTGCAG 2 cut(s) 324, 2130
PstNI CAGNNNCTG 1 cut(s) 2717
PsuI RGATCY 2 cut(s) 2402, 2666
PsyI GACNNNGTC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 4 cut(s) 1958, 2542, 2787, 2913
RsaNI GTAC 4 cut(s) 1957, 2541, 2786, 2912
RseI CAYNNNNRTG 2 cut(s) 614, 788
SapI GCTCTTC 1 cut(s) 2676
SatI GCNGC 5 cut(s) 421, 867, 1016, 2129, 2595
SchI GAGTC 6 cut(s) 245, 518, 917, 2082, 2089, 2210
ScrFI CCNGG 8 cut(s) 20, 134, 257, 695, 773, 1046, 1794, 2501
SduI GDGCHC 7 cut(s) 1245, 1309, 1510, 2070, 2246, 2350, 2972
SfcI CTRYAG 3 cut(s) 320, 2126, 2832
SfoI GGCGCC 1 cut(s) 1340
SinI GGWCC 6 cut(s) 22, 175, 316, 871, 1596, 2326
SmiMI CAYNNNNRTG 2 cut(s) 614, 788
SmlI CTYRAG 4 cut(s) 179, 266, 553, 2239
SmoI CTYRAG 4 cut(s) 179, 266, 553, 2239
SphI GCATGC 1 cut(s) 707
SsiI CCGC 7 cut(s) 382, 869, 1015, 1673, 2280, 2587, 2841
SspDI GGCGCC 1 cut(s) 1338
SspI AATATT 1 cut(s) 583
SspMI CTAG 4 cut(s) 591, 1311, 1883, 3048
StyD4I CCNGG 8 cut(s) 18, 132, 255, 693, 771, 1044, 1792, 2499
StyI CCWWGG 3 cut(s) 504, 2457, 2774
TaaI ACNGT 7 cut(s) 444, 1154, 2290, 2478, 2820, 2916, 3080
TaiI ACGT 7 cut(s) 108, 724, 880, 1546, 1729, 2760, 2791
TaqI TCGA 7 cut(s) 102, 302, 670, 1852, 2152, 2344, 3075
TauI GCSGC 1 cut(s) 1018
TfiI GAWTC 3 cut(s) 971, 2202, 2314
TscAI CASTG 5 cut(s) 447, 973, 1243, 2911, 2947
TseFI GTSAC 4 cut(s) 74, 995, 1234, 1820
TseI GCWGC 4 cut(s) 420, 866, 2128, 2594
Tsp45I GTSAC 4 cut(s) 74, 995, 1234, 1820
TspDTI ATGAA 8 cut(s) 1191, 1376, 1491, 1741, 2218, 2840, 2937, 3057
TspRI CASTG 5 cut(s) 447, 973, 1243, 2911, 2947
Tth111I GACNNNGTC 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 482
Vha464I CTTAAG 2 cut(s) 266, 553
VpaK11BI GGWCC 6 cut(s) 22, 175, 316, 871, 1596, 2326
XceI RCATGY 2 cut(s) 707, 1828
XmiI GTMKAC 2 cut(s) 1546, 1729
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 4 cut(s) 591, 1311, 1883, 3048
ZraI GACGTC 2 cut(s) 106, 1727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.