Rorug04G0146000
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011969
Physical Location & Seq
Reverse (-)
24139968 .. 24140405
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0146000.1

Sequence Viewer

Length: 438 bp
ATGTTTTCCCATTCCCATGGCTTCTGGCTTCTGGCTTCGTTTCAGCTCTTTGCCGGGTCCGTCTGGATGTTGGTTCTGTGGTCTCTGAAGCTTCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCATTGTTCCACACCATAGGCCACATCTCGGCCTGCGTCTCATTCTCTAAGGTCGCTGTGTCCTTCACCCATGTCATCAAGTCTGCAGAGCCTGTCTTTTCGGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCACTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAACGGAGCTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

145

Amino Acids

15.95

Weight (kDa)

9.46

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 9 - 144 2.1e-52 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 77, 107
AfiI CCNNNNNNNGG 3 cut(s) 172, 286, 373
AgsI TTSAA 1 cut(s) 355
AluBI AGCT 4 cut(s) 46, 91, 332, 429
AluI AGCT 4 cut(s) 46, 91, 332, 429
Alw26I GTCTC 3 cut(s) 87, 187, 266
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 4 cut(s) 139, 163, 174, 364
ApeKI GCWGC 1 cut(s) 332
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
Asp700I GAANNNNTTC 1 cut(s) 119
AspA2I CCTAGG 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 57, 140
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 202, 358
AsuII TTCGAA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 57
AvrII CCTAGG 1 cut(s) 265
BbvI GCAGC 1 cut(s) 319
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 87, 187, 266
BfaI CTAG 2 cut(s) 266, 329
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 333
BlnI CCTAGG 1 cut(s) 265
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 2 cut(s) 57, 140
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 55
Bpu14I TTCGAA 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 16, 136, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 286, 373
Bse3DI GCAATG 1 cut(s) 394
BseDI CCNNGG 3 cut(s) 16, 136, 265
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 3 cut(s) 172, 286, 373
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 4 cut(s) 141, 165, 176, 366
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 172, 286, 373
BsmAI GTCTC 3 cut(s) 87, 187, 266
BsmBI CGTCTC 1 cut(s) 187
BsnI GGCC 4 cut(s) 141, 165, 176, 366
Bso31I GGTCTC 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 419
Bsp19I CCATGG 1 cut(s) 16
BspANI GGCC 4 cut(s) 141, 165, 176, 366
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 16, 136, 265
BssT1I CCWWGG 3 cut(s) 16, 136, 265
Bst4CI ACNGT 1 cut(s) 120
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 178, 431
BstDEI CTNAG 2 cut(s) 192, 342
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 72
BstMAI GTCTC 3 cut(s) 87, 187, 266
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 4 cut(s) 141, 165, 176, 366
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 178, 431
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 57, 140
CseI GACGC 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 350, 385
CviAII CATG 3 cut(s) 17, 99, 215
DdeI CTNAG 2 cut(s) 192, 342
Eco130I CCWWGG 3 cut(s) 16, 136, 265
Eco147I AGGCCT 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 77, 107
EcoT14I CCWWGG 3 cut(s) 16, 136, 265
ErhI CCWWGG 3 cut(s) 16, 136, 265
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 3 cut(s) 20, 102, 218
FaiI YATR 6 cut(s) 18, 100, 161, 216, 284, 317
FatI CATG 3 cut(s) 16, 98, 214
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 2 cut(s) 266, 329
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 4 cut(s) 141, 165, 176, 366
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 169
Hin1II CATG 3 cut(s) 20, 102, 218
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 301
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 202, 358
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 64, 112
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 146, 230, 361
HpyF3I CTNAG 2 cut(s) 192, 342
Hsp92II CATG 3 cut(s) 20, 102, 218
LmnI GCTCC 1 cut(s) 426
Lsp1109I GCAGC 1 cut(s) 319
MaeI CTAG 2 cut(s) 266, 329
MaeIII GTNAC 2 cut(s) 337, 346
MboII GAAGA 1 cut(s) 296
MluCI AATT 2 cut(s) 355, 381
MnlI CCTC 2 cut(s) 337, 399
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 380, 436
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 16
NlaIII CATG 3 cut(s) 20, 102, 218
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 346
NspV TTCGAA 1 cut(s) 419
PceI AGGCCT 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 57, 140
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 380, 436
SatI GCNGC 1 cut(s) 333
Sau96I GGNCC 2 cut(s) 57, 140
ScrFI CCNGG 1 cut(s) 55
SetI ASST 7 cut(s) 48, 93, 198, 291, 334, 348, 431
SfcI CTRYAG 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 355, 381
SseBI AGGCCT 1 cut(s) 366
SspI AATATT 1 cut(s) 412
SspMI CTAG 2 cut(s) 266, 329
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 3 cut(s) 16, 136, 265
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 3 cut(s) 113, 299, 419
TasI AATT 2 cut(s) 355, 381
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 380, 436
Tru9I TTAA 2 cut(s) 380, 436
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 57
XmaJI CCTAGG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 266, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.