RchiOBHm_Chr4g0417121
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011969
Physical Location & Seq
Reverse (-)
42324757 .. 42332096
7340 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38721

Sequence Viewer

Length: 3141 bp
ATGGCTCAGCTGGACAGCCTCGACCTCATTAGCAAGACCAAGTCCCTGATCTCTGCCCTCGACCTCGTCTCCCGCGACCTCCCTCTCCCTCCTCACCTCTTCGACCTCGTTTCCTCCATCTACCACGCCCCCAGGCCCCCAATCCCGACCCTGCCGACGGTTTGTTGTGGTGAAGGTGAGAGCTTTGGAGGGGATGATTTGTTGGGAGACCTTGAAGATGCGCTTTTGAACCAACGTCACAAGTGCAGTTCGGGTGTTGGACTAATTGAATCCGGGGAGAAGCGTTTCCAAAGCCACCTTCGGCATAGATTGGCTCAGCTTGAAGAACTACCTTCAAGTAGAGGAGAGGAGTTGCAGACCAAGTGCTTGCTTGAATTCTATGGGCTAAAGCTTGCAGAATTGCAAAACAAGGTGCGTTCTGATGTGAGTTCAGAATACTTGCTCCGCATGAGCTGCTCTTCTCCGGACAAAACATTGTTTGATTGGGGAAGGATGCGATTGCCCCGTCCACTCTATGGTGTTGGAGATGCATTTGCCGTGGAGGCTGACGATCAGTTCAGGAAAAAACGAGATGCTGAGAGGCTCTCAAGGTTACAAGAGGAGGAGAAGAATAATATTGAGACTAGAAAACGAAAATTTTTCGCAGAAGTGCTTAATGGTGTTCGTGAATATCAATTGCAAATTCAGGCTTCTATGGCTCGTCGAAAACGAAGGAATGATTTTGTCCAGGGGTGGCATGCAAAGCAAAAACAACGTGCTACTCGAGCTGAGAAATTGAGATTCCAAGCATTGAAGTCTGATGACCAGGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAGAGACTGACATTGCTTCTTGAAGAAACGAATAAACTCCTTGTCAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATTCTAAACATACAGAGGACACTGAATCTTTAAAAGACTCAGAAGGTGATTTGACTGAGTTGGAAGAGGATGTGGAGATCATTGATTCTGATCGCAATGATGATGGTAGTGACTTGCTTAAAGGTCAGCGGCAATATAACTCTGCCATCCATTCTATCCAGGAACAGGTAACCGAGCAACCTTCAATGCTTGAAGGTGGAGAGTTAAGGCCCTACCAATTGGAGGGTCTACAATGGATGCTCTCCTTGTTCAATAACAATCTAAACGGTATATTGGCTGACGAGATGGGATTGGGTAAAACTATACAAACCATTTCATTGATTGCATATCTCATTGAAAACAAGGGTGTCACTGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTATTACCAAATTGGGTTACTGAATTTGCAACATGGGCTCCTAGTATTAAGGCCATTCTTTATGACGGGCGCCAAGAGGAAAGAAAGGCAATGAAGGAAGAATTATCAGGGGAAGGAAAATTTAATGTATTGATCACACATTATGACCTTATCATGAGGGATAAACAGTTTTTGAAGAAGATTAGCTGGGCTTACCTGATCGTTGACGAAGGGCATCGGTTGAAGAATTCTGAGTGTGCTCTCGCTATCACACTTGCAGGCTATGACATGCGACGTAGACTTCTGTTGACTGGCACGCCAATACAGAATAGCTTGCAGGAGTTGTGGTCCCTACTCAATTTTCTTCTCCCACACATTTTCAATTCAGTTCAGAATTTTGAGGAATGGTTTAATGCACCTTTTGCGGATCGGGGTGATATGTCTCTTACGGAGGAAGAACAGCTATTGATCATTCGACGTCTACATCAAGTTATAAGGCCATTCATATTGAGGAGGAAAAAAGATGAAGTTGAGAAATTCCTTCCTGGAAAATCCCAAGTCATACTGAAATGCGACATGTCATCATGGCAGAAAGTATATTATCGACAAGTTACAGATGTGGGCAGGGTCGGGCTAGATAATGGTTCGGGGAAATCAAAGAGCTTGCAGAACCTAACCATGCAGCTCAGAAAGTGTTGTAACCACCCGTACCTTTTTGTCGTGGGAGATTATAACATCTGGCGTCAGGAGGAGATCGTAAGAGCATCGGGAAAATTTGAACTGCTCGATCGTCTACTCCCAAAACTCCAAAAAGCGGGGCATAGAGTCTTGCTTTTCTCACAAATGACTCGCCTCATGGATATTCTTGAAGTTTATCTGCAGCTTCACCATTTCCAGTATCTTCGATTGGATGGTTCAACAAAAACTGAGGAAAGAGGGACTCTGCTAAAGAGATTCAATGCTCCAGACTCTCCTTACTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAATCCGCAGATACAGTTATAATTTTTGATAGTGATTGGAATCCTCAGATGGATCAACAAGCAGAGGATCGAGCCCATCGTATAGGTCAAAAGAAAGAAGTCAGGGTATTTGTGTTGGTTAGTGTTGGATCCATTGAAGAAGTAATTTTGGAGCGTGCTAAACAGAAGATGGGAATAGATGCCAAGGTCATCCAGGCCGGACTGTTCAATACAACTTCCACAGCTCAGGACAGAAGAGATATGTTGGAGGAAATCATGCGCAAGGGTACAAGTTCACTTGGCACAGACGTGCCAAGCGAGAGAGAAATCAACCGCCTTGCTGCCAGATCAGATGACGAGTTCCGGATGTTTGAGAAAATGGATGCTGAGAGAAGGCAAAAGGAGAATTATAGATCTCGCCTAATGGAAGAGCATGAGGTTCCTGAGTGGGCATATTCAGCACCTGATAAGGTTACAGCTTCCAAAGGATTTGATTATAGCAATGTCTCGGGAAAGCGGCCAAGAAAGGAGGTACGTTCTTATGCTGATGGCCTTAGTGATCTACAGTTTATGAAAGCTGTAGAAAGTGGAGAAGATGTATCGATGTTTTCCGGTAAAGGAAAGAGGAAAAATCTTTTTCCATCTAAGAGCAGTGTTGTACCTTTGAATGAAAATGTGCCGGTGGTCAGTGGAAGTGAAGAGACATATGGTTTGACCCCACCTTCAAAGAGACACAAGTCTGAAGGACCAAATATAGTGAAGCACGAAAGTCATGCAGGAGTTTTCAAAATTACTAGAAAGAAGAGATCAAATTCATCCTCCGACAGTAAAGGCCGAAATTCCAACGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

1046

Amino Acids

119.6

Weight (kDa)

8.26

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 374 - 535 2.8e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 378 - 665 6.8e-93 SNF2-related domain
HDA2-3 PF11496 646 - 824 2.3e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 685 - 798 1.1e-25 Helicase conserved C-terminal domain
SnAC PF14619 889 - 953 1.1e-08 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1775, 2013, 2327
AatII GACGTC 1 cut(s) 1762
Acc16I TGCGCA 1 cut(s) 2567
AccB1I GGYRCC 1 cut(s) 1371
AccB7I CCANNNNNTGG 1 cut(s) 515
AccI GTMKAC 4 cut(s) 1147, 1579, 1762, 2074
AccII CGCG 1 cut(s) 75
AccIII TCCGGA 2 cut(s) 463, 2649
AciI CCGC 8 cut(s) 73, 445, 1048, 1706, 2096, 2313, 2620, 2803
AclWI GGATC 5 cut(s) 1716, 2367, 2382, 2430, 2443
AcoI YGGCCR 1 cut(s) 2804
AcuI CTGAAG 1 cut(s) 3048
AcyI GRCGYC 3 cut(s) 1372, 1759, 2023
AfaI GTAC 4 cut(s) 1991, 2575, 2820, 2946
AfiI CCNNNNNNNGG 5 cut(s) 157, 515, 1084, 1141, 2095
AflIII ACRYGT 1 cut(s) 1857
AjiI CACGTC 1 cut(s) 2596
AjnI CCWGG 6 cut(s) 131, 726, 804, 1077, 1825, 2499
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AleI CACNNNNGTG 1 cut(s) 2594
AloI GAACNNNNNNTCC 4 cut(s) 888, 920, 2294, 2326
Alw21I GWGCWC 2 cut(s) 1543, 2279
Alw26I GTCTC 8 cut(s) 73, 201, 614, 841, 1728, 2797, 2981, 3010
AlwI GGATC 5 cut(s) 1716, 2367, 2382, 2430, 2443
AlwNI CAGNNNCTG 1 cut(s) 2750
Ama87I CYCGRG 2 cut(s) 762, 2794
Aor13HI TCCGGA 2 cut(s) 463, 2649
AoxI GGCC 9 cut(s) 134, 1127, 1274, 1353, 1778, 2502, 2804, 2836, 3118
ApaI GGGCCC 1 cut(s) 1278
ApeKI GCWGC 5 cut(s) 453, 899, 1963, 2161, 2627
ArsI GACNNNNNNTTYG 2 cut(s) 2980, 3012
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 3 cut(s) 223, 1374, 2568
AspS9I GGNCC 6 cut(s) 135, 1128, 1274, 1275, 1629, 3032
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 6 cut(s) 86, 182, 188, 977, 1727, 2159
AvaI CYCGRG 2 cut(s) 762, 2794
AvaII GGWCC 2 cut(s) 1629, 3032
BaeGI GKGCMC 1 cut(s) 1278
BamHI GGATCC 1 cut(s) 2435
BanI GGYRCC 1 cut(s) 1371
BanII GRGCYC 3 cut(s) 1278, 1342, 2383
BauI CACGAG 1 cut(s) 2280
Bbv12I GWGCWC 2 cut(s) 1543, 2279
BbvI GCAGC 5 cut(s) 440, 886, 1975, 2173, 2614
BceAI ACGGC 1 cut(s) 521
BcgI CGANNNNNNTGC 2 cut(s) 3041, 3075
BciT130I CCWGG 6 cut(s) 133, 728, 806, 1079, 1827, 2501
BclI TGATCA 2 cut(s) 1434, 1749
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 8 cut(s) 73, 201, 614, 841, 1728, 2797, 2981, 3010
BfaI CTAG 4 cut(s) 624, 1344, 1916, 3081
BfmI CTRYAG 3 cut(s) 2159, 2849, 2865
BfoI RGCGCY 1 cut(s) 1375
BglI GCCNNNNNGGC 1 cut(s) 542
BglII AGATCT 1 cut(s) 2699
BisI GCNGC 7 cut(s) 454, 900, 1049, 1964, 2162, 2628, 2804
BlpI GCTNAGC 2 cut(s) 6, 315
BlsI GCNGC 7 cut(s) 455, 901, 1050, 1965, 2163, 2629, 2805
Bme1390I CCNGG 7 cut(s) 133, 274, 728, 806, 1079, 1827, 2501
Bme18I GGWCC 2 cut(s) 1629, 3032
BmeT110I CYCGRG 2 cut(s) 762, 2794
BmgBI CACGTC 1 cut(s) 2596
BmgT120I GGNCC 6 cut(s) 135, 1128, 1274, 1275, 1629, 3032
BmiI GGNNCC 9 cut(s) 137, 1276, 1277, 1293, 1341, 1373, 1631, 2437, 2727
BmrFI CCNGG 7 cut(s) 133, 274, 728, 806, 1079, 1827, 2501
BmrI ACTGGG 1 cut(s) 1281
BmsI GCATC 9 cut(s) 208, 483, 517, 562, 1146, 1525, 2054, 2476, 2659
BmuI ACTGGG 1 cut(s) 1281
BoxI GACNNNNGTC 1 cut(s) 3022
BplI GAGNNNNNCTC 2 cut(s) 569, 601
BpmI CTGGAG 2 cut(s) 2229, 2307
Bpu10I CCTNAGC 1 cut(s) 2532
Bpu1102I GCTNAGC 2 cut(s) 6, 315
BpuEI CTTGAG 2 cut(s) 571, 2293
BpuMI CCSGG 1 cut(s) 274
Bsa29I ATCGAT 1 cut(s) 2888
BsaBI GATNNNNATC 2 cut(s) 1008, 2346
BsaHI GRCGYC 3 cut(s) 1372, 1759, 2023
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 5 cut(s) 131, 273, 537, 727, 2490
BsaWI WCCGGW 3 cut(s) 463, 2649, 2897
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 515, 1084, 1141, 2095
Bse118I RCCGGY 1 cut(s) 2965
Bse1I ACTGG 3 cut(s) 1276, 1597, 2176
Bse3DI GCAATG 4 cut(s) 854, 1021, 1398, 2794
Bse8I GATNNNNATC 2 cut(s) 1008, 2346
BseAI TCCGGA 2 cut(s) 463, 2649
BseBI CCWGG 6 cut(s) 133, 728, 806, 1079, 1827, 2501
BseCI ATCGAT 1 cut(s) 2888
BseDI CCNNGG 5 cut(s) 131, 273, 537, 727, 2490
BseJI GATNNNNATC 2 cut(s) 1008, 2346
BseLI CCNNNNNNNGG 5 cut(s) 157, 515, 1084, 1141, 2095
BseMI GCAATG 4 cut(s) 854, 1021, 1398, 2794
BseNI ACTGG 3 cut(s) 1276, 1597, 2176
BseRI GAGGAG 7 cut(s) 81, 357, 362, 614, 617, 1807, 2045
BseSI GKGCMC 1 cut(s) 1278
BseXI GCAGC 5 cut(s) 440, 886, 1975, 2173, 2614
BseYI CCCAGC 1 cut(s) 1488
BsgI GTGCAG 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 2071
BshFI GGCC 9 cut(s) 136, 1129, 1276, 1355, 1780, 2504, 2806, 2838, 3120
BshNI GGYRCC 1 cut(s) 1371
BshVI ATCGAT 1 cut(s) 2888
BsiEI CGRYCG 1 cut(s) 2071
BsiHKAI GWGCWC 2 cut(s) 1543, 2279
BsiHKCI CYCGRG 2 cut(s) 762, 2794
BsiSI CCGG 6 cut(s) 273, 464, 2505, 2650, 2898, 2966
BslFI GGGAC 3 cut(s) 28, 1615, 2233
BslI CCNNNNNNNGG 5 cut(s) 157, 515, 1084, 1141, 2095
BsmAI GTCTC 8 cut(s) 73, 201, 614, 841, 1728, 2797, 2981, 3010
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 3 cut(s) 28, 1615, 2233
BsnI GGCC 9 cut(s) 136, 1129, 1276, 1355, 1780, 2504, 2806, 2838, 3120
Bso31I GGTCTC 1 cut(s) 201
BsoBI CYCGRG 2 cut(s) 762, 2794
Bsp120I GGGCCC 1 cut(s) 1274
Bsp1286I GDGCHC 5 cut(s) 1278, 1342, 1543, 2279, 2383
Bsp13I TCCGGA 2 cut(s) 463, 2649
Bsp1720I GCTNAGC 2 cut(s) 6, 315
BspACI CCGC 8 cut(s) 73, 445, 1048, 1706, 2096, 2313, 2620, 2803
BspANI GGCC 9 cut(s) 136, 1129, 1276, 1355, 1780, 2504, 2806, 2838, 3120
BspDI ATCGAT 1 cut(s) 2888
BspEI TCCGGA 2 cut(s) 463, 2649
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 1455
BspLI GGNNCC 9 cut(s) 137, 1276, 1277, 1293, 1341, 1373, 1631, 2437, 2727
BspMAI CTGCAG 1 cut(s) 2163
BspPI GGATC 5 cut(s) 1716, 2367, 2382, 2430, 2443
BspQI GCTCTTC 2 cut(s) 463, 2709
BspT107I GGYRCC 1 cut(s) 1371
BspTNI GGTCTC 1 cut(s) 201
BsrDI GCAATG 4 cut(s) 854, 1021, 1398, 2794
BsrFI RCCGGY 1 cut(s) 2965
BsrI ACTGG 3 cut(s) 1276, 1597, 2176
BssAI RCCGGY 1 cut(s) 2965
BssECI CCNNGG 5 cut(s) 131, 273, 537, 727, 2490
BssNI GRCGYC 3 cut(s) 1372, 1759, 2023
BssSI CACGAG 1 cut(s) 2280
BssT1I CCWWGG 1 cut(s) 2490
Bst2BI CACGAG 1 cut(s) 2280
Bst2UI CCWGG 6 cut(s) 133, 728, 806, 1079, 1827, 2501
Bst4CI ACNGT 7 cut(s) 160, 1187, 1470, 2323, 2511, 2853, 3113
Bst6I CTCTTC 7 cut(s) 104, 463, 978, 2536, 2709, 2979, 3083
BstACI GRCGYC 3 cut(s) 1372, 1759, 2023
BstAPI GCANNNNNTGC 2 cut(s) 453, 1703
BstC8I GCNNGC 8 cut(s) 368, 393, 738, 1561, 1598, 1616, 1946, 2463
BstDSI CCRYGG 1 cut(s) 537
BstEII GGTNACC 1 cut(s) 1087
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 1375
BstHHI GCGC 3 cut(s) 223, 1374, 2568
BstMAI GTCTC 8 cut(s) 73, 201, 614, 841, 1728, 2797, 2981, 3010
BstMCI CGRYCG 1 cut(s) 2071
BstMWI GCNNNNNNNGC 9 cut(s) 453, 542, 695, 742, 764, 1298, 1337, 1703, 2744
BstNI CCWGG 6 cut(s) 133, 728, 806, 1079, 1827, 2501
BstNSI RCATGY 3 cut(s) 740, 1573, 1861
BstPAI GACNNNNGTC 1 cut(s) 3022
BstPI GGTNACC 1 cut(s) 1087
BstSCI CCNGG 7 cut(s) 131, 272, 726, 804, 1077, 1825, 2499
BstSFI CTRYAG 3 cut(s) 2159, 2849, 2865
BstSLI GKGCMC 1 cut(s) 1278
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 5 cut(s) 440, 886, 1975, 2173, 2614
BstX2I RGATCY 2 cut(s) 2435, 2699
BstYI RGATCY 2 cut(s) 2435, 2699
Bsu15I ATCGAT 1 cut(s) 2888
BsuRI GGCC 9 cut(s) 136, 1129, 1276, 1355, 1780, 2504, 2806, 2838, 3120
BsuTUI ATCGAT 1 cut(s) 2888
BtgI CCRYGG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 2596
BtsI GCAGTG 1 cut(s) 2944
BtsIMutI CAGTG 4 cut(s) 939, 1269, 2944, 2980
Cac8I GCNNGC 8 cut(s) 368, 393, 738, 1561, 1598, 1616, 1946, 2463
CaiI CAGNNNCTG 1 cut(s) 2750
CciI TCATGA 1 cut(s) 1455
CfoI GCGC 3 cut(s) 223, 1374, 2568
Cfr10I RCCGGY 1 cut(s) 2965
Cfr13I GGNCC 6 cut(s) 135, 1128, 1274, 1275, 1629, 3032
ClaI ATCGAT 1 cut(s) 2888
CseI GACGC 1 cut(s) 2012
Csp6I GTAC 4 cut(s) 1990, 2574, 2819, 2945
CviQI GTAC 4 cut(s) 1990, 2574, 2819, 2945
DinI GGCGCC 1 cut(s) 1373
DraI TTTAAA 1 cut(s) 951
EaeI YGGCCR 1 cut(s) 2804
Eam1104I CTCTTC 7 cut(s) 104, 463, 978, 2536, 2709, 2979, 3083
EarI CTCTTC 7 cut(s) 104, 463, 978, 2536, 2709, 2979, 3083
Eco130I CCWWGG 1 cut(s) 2490
Eco24I GRGCYC 3 cut(s) 1278, 1342, 2383
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 1629, 3032
Eco57I CTGAAG 1 cut(s) 3048
Eco88I CYCGRG 2 cut(s) 762, 2794
Eco91I GGTNACC 1 cut(s) 1087
EcoO109I RGGNCCY 3 cut(s) 135, 1128, 1275
EcoO65I GGTNACC 1 cut(s) 1087
EcoRI GAATTC 2 cut(s) 374, 1528
EcoRII CCWGG 6 cut(s) 131, 726, 804, 1077, 1825, 2499
EcoT14I CCWWGG 1 cut(s) 2490
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 3 cut(s) 1278, 1342, 2383
EgeI GGCGCC 1 cut(s) 1373
EheI GGCGCC 1 cut(s) 1373
ErhI CCWWGG 1 cut(s) 2490
Esp3I CGTCTC 1 cut(s) 73
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 3 cut(s) 28, 1615, 2233
FauI CCCGC 2 cut(s) 80, 2089
FauNDI CATATG 1 cut(s) 2992
FbaI TGATCA 2 cut(s) 1434, 1749
FblI GTMKAC 4 cut(s) 1147, 1579, 1762, 2074
Fnu4HI GCNGC 7 cut(s) 454, 900, 1049, 1964, 2162, 2628, 2804
FriOI GRGCYC 3 cut(s) 1278, 1342, 2383
Fsp4HI GCNGC 7 cut(s) 454, 900, 1049, 1964, 2162, 2628, 2804
FspBI CTAG 4 cut(s) 624, 1344, 1916, 3081
FspI TGCGCA 1 cut(s) 2567
GlaI GCGC 3 cut(s) 222, 1373, 2567
GluI GCNGC 7 cut(s) 454, 900, 1049, 1964, 2162, 2628, 2804
GsaI CCCAGC 1 cut(s) 1492
GsuI CTGGAG 2 cut(s) 2229, 2307
HaeII RGCGCY 1 cut(s) 1375
HaeIII GGCC 9 cut(s) 136, 1129, 1276, 1355, 1780, 2504, 2806, 2838, 3120
HapII CCGG 6 cut(s) 273, 464, 2505, 2650, 2898, 2966
HgaI GACGC 1 cut(s) 2012
HhaI GCGC 3 cut(s) 223, 1374, 2568
Hin1I GRCGYC 3 cut(s) 1372, 1759, 2023
Hin6I GCGC 3 cut(s) 221, 1372, 2566
HinP1I GCGC 3 cut(s) 221, 1372, 2566
HincII GTYRAC 2 cut(s) 1507, 1590
HindII GTYRAC 2 cut(s) 1507, 1590
HindIII AAGCTT 1 cut(s) 389
HpaII CCGG 6 cut(s) 273, 464, 2505, 2650, 2898, 2966
HphI GGTGA 6 cut(s) 86, 182, 188, 977, 1727, 2159
Hpy166II GTNNAC 8 cut(s) 509, 1148, 1507, 1580, 1590, 1763, 2075, 2582
Hpy8I GTNNAC 8 cut(s) 509, 1148, 1507, 1580, 1590, 1763, 2075, 2582
Hpy99I CGWCG 4 cut(s) 160, 705, 1578, 1761
HpyCH4III ACNGT 7 cut(s) 160, 1187, 1470, 2323, 2511, 2853, 3113
HpyCH4IV ACGT 7 cut(s) 235, 754, 910, 1576, 1759, 2595, 2821
HpyF10VI GCNNNNNNNGC 9 cut(s) 453, 542, 695, 742, 764, 1298, 1337, 1703, 2744
HpySE526I ACGT 7 cut(s) 235, 754, 910, 1576, 1759, 2595, 2821
Hsp92I GRCGYC 3 cut(s) 1372, 1759, 2023
HspAI GCGC 3 cut(s) 221, 1372, 2566
KasI GGCGCC 1 cut(s) 1371
Kpn2I TCCGGA 2 cut(s) 463, 2649
Ksp22I TGATCA 2 cut(s) 1434, 1749
LguI GCTCTTC 2 cut(s) 463, 2709
LmnI GCTCC 6 cut(s) 447, 896, 1297, 1345, 2248, 2458
Lsp1109I GCAGC 5 cut(s) 440, 886, 1975, 2173, 2614
LweI GCATC 9 cut(s) 208, 483, 517, 562, 1146, 1525, 2054, 2476, 2659
MaeI CTAG 4 cut(s) 624, 1344, 1916, 3081
MaeII ACGT 7 cut(s) 235, 754, 910, 1576, 1759, 2595, 2821
MaeIII GTNAC 9 cut(s) 236, 591, 1028, 1087, 1267, 1318, 1891, 1979, 2758
MfeI CAATTG 2 cut(s) 674, 1136
MflI RGATCY 2 cut(s) 2435, 2699
MhlI GDGCHC 5 cut(s) 1278, 1342, 1543, 2279, 2383
Mly113I GGCGCC 1 cut(s) 1372
MlyI GAGTC 5 cut(s) 950, 2115, 2122, 2215, 2243
MmeI TCCRAC 6 cut(s) 238, 502, 960, 2413, 2532, 3132
Mph1103I ATGCAT 1 cut(s) 532
MroI TCCGGA 2 cut(s) 463, 2649
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 7 cut(s) 654, 950, 1038, 1124, 1350, 1425, 1692
MslI CAYNNNNRTG 2 cut(s) 821, 2594
MspA1I CMGCKG 2 cut(s) 10, 1048
MspI CCGG 6 cut(s) 273, 464, 2505, 2650, 2898, 2966
MspR9I CCNGG 7 cut(s) 133, 274, 728, 806, 1079, 1827, 2501
MunI CAATTG 2 cut(s) 674, 1136
MvaI CCWGG 6 cut(s) 133, 728, 806, 1079, 1827, 2501
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 9 cut(s) 453, 542, 695, 742, 764, 1298, 1337, 1703, 2744
NarI GGCGCC 1 cut(s) 1372
NciI CCSGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 2992
NlaIV GGNNCC 9 cut(s) 137, 1276, 1277, 1293, 1341, 1373, 1631, 2437, 2727
NmuCI GTSAC 3 cut(s) 236, 1028, 1267
NsbI TGCGCA 1 cut(s) 2567
NsiI ATGCAT 1 cut(s) 532
NspI RCATGY 3 cut(s) 740, 1573, 1861
OliI CACNNNNGTG 1 cut(s) 2594
PaeI GCATGC 1 cut(s) 740
PaeR7I CTCGAG 1 cut(s) 762
PagI TCATGA 1 cut(s) 1455
PciI ACATGT 1 cut(s) 1857
PciSI GCTCTTC 2 cut(s) 463, 2709
PcsI WCGNNNNNNNCGW 5 cut(s) 72, 706, 760, 2383, 2601
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 7 cut(s) 269, 780, 920, 944, 1004, 2235, 2347
PflFI GACNNNGTC 2 cut(s) 40, 65
PflMI CCANNNNNTGG 1 cut(s) 515
PfoI TCCNGGA 2 cut(s) 1077, 1825
PkrI GCNGC 7 cut(s) 455, 901, 1050, 1965, 2163, 2629, 2805
Ple19I CGATCG 1 cut(s) 2071
PleI GAGTC 5 cut(s) 950, 2114, 2122, 2215, 2243
PluTI GGCGCC 1 cut(s) 1375
PpsI GAGTC 5 cut(s) 950, 2114, 2122, 2215, 2243
PscI ACATGT 1 cut(s) 1857
PshAI GACNNNNGTC 1 cut(s) 3022
PsiI TTATAA 3 cut(s) 1775, 2013, 2327
Psp6I CCWGG 6 cut(s) 131, 726, 804, 1077, 1825, 2499
PspEI GGTNACC 1 cut(s) 1087
PspFI CCCAGC 1 cut(s) 1488
PspGI CCWGG 6 cut(s) 131, 726, 804, 1077, 1825, 2499
PspN4I GGNNCC 9 cut(s) 137, 1276, 1277, 1293, 1341, 1373, 1631, 2437, 2727
PspOMI GGGCCC 1 cut(s) 1274
PspPI GGNCC 6 cut(s) 135, 1128, 1274, 1275, 1629, 3032
PspXI VCTCGAGB 1 cut(s) 762
PstI CTGCAG 1 cut(s) 2163
PstNI CAGNNNCTG 1 cut(s) 2750
PsuI RGATCY 2 cut(s) 2435, 2699
PsyI GACNNNGTC 2 cut(s) 40, 65
PvuI CGATCG 1 cut(s) 2071
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 4 cut(s) 1991, 2575, 2820, 2946
RsaNI GTAC 4 cut(s) 1990, 2574, 2819, 2945
RseI CAYNNNNRTG 2 cut(s) 821, 2594
SapI GCTCTTC 2 cut(s) 463, 2709
SaqAI TTAA 7 cut(s) 654, 950, 1038, 1124, 1350, 1425, 1692
SatI GCNGC 7 cut(s) 454, 900, 1049, 1964, 2162, 2628, 2804
Sau96I GGNCC 6 cut(s) 135, 1128, 1274, 1275, 1629, 3032
SchI GAGTC 5 cut(s) 950, 2115, 2122, 2215, 2243
ScrFI CCNGG 7 cut(s) 133, 274, 728, 806, 1079, 1827, 2501
SduI GDGCHC 5 cut(s) 1278, 1342, 1543, 2279, 2383
SfaNI GCATC 9 cut(s) 208, 483, 517, 562, 1146, 1525, 2054, 2476, 2659
SfcI CTRYAG 3 cut(s) 2159, 2849, 2865
SfoI GGCGCC 1 cut(s) 1373
Sfr274I CTCGAG 1 cut(s) 762
SinI GGWCC 2 cut(s) 1629, 3032
SlaI CTCGAG 1 cut(s) 762
SmiMI CAYNNNNRTG 2 cut(s) 821, 2594
SmlI CTYRAG 3 cut(s) 586, 762, 2272
SmoI CTYRAG 3 cut(s) 586, 762, 2272
SphI GCATGC 1 cut(s) 740
SsiI CCGC 8 cut(s) 73, 445, 1048, 1706, 2096, 2313, 2620, 2803
SspDI GGCGCC 1 cut(s) 1371
SspI AATATT 1 cut(s) 616
SspMI CTAG 4 cut(s) 624, 1344, 1916, 3081
StyD4I CCNGG 7 cut(s) 131, 272, 726, 804, 1077, 1825, 2499
StyI CCWWGG 1 cut(s) 2490
TaaI ACNGT 7 cut(s) 160, 1187, 1470, 2323, 2511, 2853, 3113
TaiI ACGT 7 cut(s) 238, 757, 913, 1579, 1762, 2598, 2824
TauI GCSGC 2 cut(s) 1051, 2806
TfiI GAWTC 7 cut(s) 269, 780, 920, 944, 1004, 2235, 2347
Tru1I TTAA 7 cut(s) 654, 950, 1038, 1124, 1350, 1425, 1692
Tru9I TTAA 7 cut(s) 654, 950, 1038, 1124, 1350, 1425, 1692
TscAI CASTG 4 cut(s) 946, 1276, 2944, 2980
TseFI GTSAC 3 cut(s) 236, 1028, 1267
TseI GCWGC 5 cut(s) 453, 899, 1963, 2161, 2627
Tsp45I GTSAC 3 cut(s) 236, 1028, 1267
TspDTI ATGAA 8 cut(s) 1224, 1409, 1774, 1821, 2251, 2873, 2970, 3090
TspGWI ACGGA 1 cut(s) 1745
TspRI CASTG 4 cut(s) 946, 1276, 2944, 2980
Tth111I GACNNNGTC 2 cut(s) 40, 65
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 2 cut(s) 1629, 3032
XceI RCATGY 3 cut(s) 740, 1573, 1861
XhoI CTCGAG 1 cut(s) 762
XmiI GTMKAC 4 cut(s) 1147, 1579, 1762, 2074
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 4 cut(s) 624, 1344, 1916, 3081
ZraI GACGTC 1 cut(s) 1760
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.