MD13G1186900.v1.1
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011969
Physical Location & Seq
Forward (+)
15914423 .. 15924330
9908 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1186900.v1.1.491

Sequence Viewer

Length: 3261 bp
ATGTCTCCAATGGCCGAGCTGGACAGCAGCAGCTCCAGCCTCGACCACGTCCACAAGACCAAGTCCCTGATCTGCGCCCTCAACTTCCTCTTTCGCAACCTCCCTCTCCCTCCCGACTTATTCAACGTCGTTTCCAACATCTACGCCGCCGCCCCGGATGCCCCTCTCGACGGTGACGAGGGTTTGGATGGCCCTGATAGTTCTGCTGCAGGAGAAGATTTATTAGCAGACCTTGGAGATGCACTTTTGGAACAACGTCAAAATTTCACGTCGGGTGCTGCATTAATAGAATCGAAAGAAAAACGTTATGAAAGCCACATTCAGCATCGGTTAACCGAACTTGAAGAATTACCTTCAAGTAGAGGAGAGGACCTGCAGACAAAGTGCTTGCTCGAACTCTATGGGCTAAAGCTTGCAGAATTGCAAAAGAAGGTCCGCTCTGAAGTGAGTTCAGAATACTCACTCCGTATGCATTGTGAGCATCCTGACAAAACATTGTTTGACTGGGGCATGATGCGATTGCGCACTCCACTGTATGGTGTTGGAGATGCTTTTGCCATGGAGGCCGATGATCAGTTCAGGAAGAAACGAGATGCTGAGCGCCTCTCAAGGTTAGAAGAGGAGGAGAAGAACAACATTGAGACTAGGAAAAGAAAATTCTTTACAGAAATACTTAATGCTGTTCGTGAATACCAATTGCAAATTCAGGCTTCTATGAAACGTCGGAAACAGAGGAATGATCATGTCCTGAGTTGGCATGGAAAGCAAAGACAACGAGCCACAAGGGCTGAGAAATTGAGGTTCCAGGCCTTAAAGGCTGATGATCAGGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAAAGGCTAACAATACTTCTTGAAGAAACAAATAAACTCCTTGTTAATTTGGGAGCTGCTGTTCAGCGGCAGAAAGATTTTAAACATTCAGAGGGTACTGAAGAAATGAAAGACTCTGAAGGTGAATTGACAGAGTTGGAAGAAGATGTGGACCTCATTGATTCTGATTGTAATGATGACAGTAGTGACTTGCTTAAAGGTCAGCGGCAGTATAACTCAGCCATCCATTCTATTGAGGAACAGGTGACTGAGCAACCCTCCATGCTTGAAGGTGGAGAACTGAGGTCTTACCAGGTTGAGGGCCTACAATGGATGGTTTCCTTGTTCAATAACAATCTAAATGGTATTTTGGCTGACGAGATGGGATTGGGTAAAACCATACAAACTATATCATTGATTGCATATCTCATTGAAAACAAGGGTGTCACTGGACCCCACTTGATAGTGGCTCCGAAGGCCGTATTACCAAATTGGGTTAATGAATTCGCAACGTGGGCTCCTAGTATTGCTGCTATTCTTTATGATGGACGTCAAGACGAAAGAAAGGCAATGAGGGAAGAATTATCAGGGGAAGGAAAATTTAATGTGTTGATCACACATTATGACCTTATCATGAGGGATAAACAATTTTTGAAAAAAATTAACTGGTACTACTTGATTGTTGATGAAGGACATAGGTTGAAGAATCATGAGTGTGCTCTTGCACAAACACTTGCAGGTTATGATATGCGACGAAGACTTCTGTTGACTGGTACCCCAATACAGAATAGCTTGCAGGAGTTGTGGTCCCTGCTTAATTTCCTTCTCCCACACATTTTTAATTCAGTTCAAAATTTTGAGGAATGGTTTAATGCACCTTTTGCGGATCGGGGCAGTATTACCCTTACTGATGAAGAACAGCTATTGATCATTCGCCGTCTACATCAAGTTATACGGCCCTTCATACTGAGGAGGAAAAAAGATGAGGTGGAGAAGTTCCTTCCTGGAAAATCTCAAGTCATACTGAAAAGTGACATGTCAGCATGGCAGAAAGTATATTATCAACAAGTTACAGATGTGGGCAGAGTTGGGCTTGATAATGGTTCTGGAAAATCCAAGAGCTTGCAGAACCTGACAATGCAGCTCAGGAAGTGTTGTAACCACCCATACCTTTTTGTGGGAGATTATAACATGTGGCGCAGGGAGGAGATCATCAGAGCATCAGGAAAATTTGAACTACTTGATCGTCTACTCCCAAAACTCCACAAAGCGGGGCACAGAATCCTGCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAATTTATATGCAACTTCACGACTTTAAGTATCTTCGACTGGATGGTTCAACAAAAACTGAGGAAAGGGGGACTCTGCTAAAGAAATTCAATGCTCCAGACTCTCCATTCTTCATGTTTCTCTTGAGCACTCGTGCCGGAGGCCTTGGTTTGAACTTACAAACTGCTGATACGGTAATAATTTTCGACAGTGATTGGAATCCACAAATGGACCAACAGGCGGAGGACCGGGCCCATCGTATAGGTCAAAAGAAAGAAGTTAGGGTATTTGTGTTGGTTAGTGTTGGATCAATCGAAGAGGTAATTTTAGAGCGTGCTAAAGAGAAGATGGGCATAGATGCCAAGGTCATCCAGGCCGGACTATTTAATACAACTTCCACAGCTCAGGACAGAAGAGAGCTGTTGGAGGAAATCATGCGCAAGGGTACAAGATCACTTGGGACAGATGTACCAAGCGAGCGAGAGATCAACCGCCTTGCTGCCAGATCAGAAGAAGAGTTCTGGCTGTTTGAGAAAATGGATGAGGAGAGAAGGCGAAAGGAGAACTACAGATCTCGCCTTATGGAAGACCATGAGGTTCCCGAGTGGGCATATTCAACACCTGATAAGCAAACTGCTACCAAAGGCTTTCATAGTGGCAGCATCACTGGAAAGCGCAGGAGAAAGGCGGTACAGTCTTATTCTGATGGCCTTAGTGATTTACAGTGGATGAAAGCTGTCGAAAATGGAGCAGACATATCGAAGCTTTCAGGAAGAGGAACAAAGAGAAATCATGTTCAATCAGATAGTGTTGAATTAGTTAGTGGTAATGCAGGAACAGAGGAAAAAGTTACGAAATTGATTCAAAATGTTCCGTTGGTGAAAGAGGGAGCAAGTGAAGATACCTATGCGTTGACCCCAGCCTCGAAGAGACAGAAGTCTGAAGAGCTGGAAGTAGAGAAACATGAAAGTCATGCAGCTGGAGGAAGTGGTTTGAGTGGGCCTATCTTGACGTTCAAGATACATCGAAAAAAGAGATCAAGCTATACTAACCCAAGTTCCTCCTCCGATGGTAGAGGGCAAAATTCCAATGTAAGAGGTAATGGATGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

1087

Amino Acids

124.13

Weight (kDa)

6.26

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 381 - 542 1.9e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 385 - 672 9.2e-93 SNF2-related domain
HDA2-3 PF11496 653 - 829 3.3e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 691 - 804 1.3e-25 Helicase conserved C-terminal domain
SnAC PF14619 897 - 959 4.8e-09 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2031
AatII GACGTC 1 cut(s) 1396
Acc16I TGCGCA 2 cut(s) 524, 2585
Acc36I ACCTGC 2 cut(s) 381, 1571
Acc65I GGTACC 1 cut(s) 1616
AccB1I GGYRCC 1 cut(s) 1616
AccB7I CCANNNNNTGG 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 438
AccI GTMKAC 2 cut(s) 1783, 2092
AclI AACGTT 1 cut(s) 304
AclWI GGATC 2 cut(s) 1737, 2461
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 4 cut(s) 462, 984, 1002, 3108
AcyI GRCGYC 1 cut(s) 1393
AfaI GTAC 6 cut(s) 961, 1514, 1618, 2593, 2616, 2838
AfiI CCNNNNNNNGG 6 cut(s) 170, 536, 1162, 2020, 2113, 2386
AflIII ACRYGT 2 cut(s) 1878, 2034
AjiI CACGTC 2 cut(s) 49, 270
AjnI CCWGG 4 cut(s) 804, 1155, 1846, 2517
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AloI GAACNNNNNNTCC 2 cut(s) 909, 941
Alw21I GWGCWC 2 cut(s) 1564, 2297
Alw26I GTCTC 4 cut(s) 9, 635, 2156, 3070
AlwI GGATC 2 cut(s) 1737, 2461
AlwNI CAGNNNCTG 1 cut(s) 1975
Ama87I CYCGRG 1 cut(s) 2747
ApaI GGGCCC 1 cut(s) 2401
ArsI GACNNNNNNTTYG 2 cut(s) 2134, 2166
AseI ATTAAT 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 1616
AspLEI GCGC 6 cut(s) 77, 525, 603, 2043, 2586, 2823
AsuC2I CCSGG 2 cut(s) 155, 2396
AsuHPI GGTGA 4 cut(s) 185, 998, 1120, 3037
AvaI CYCGRG 1 cut(s) 2747
AvaII GGWCC 7 cut(s) 370, 433, 1015, 1295, 1650, 2377, 2392
BaeGI GKGCMC 2 cut(s) 2121, 2401
BaeI ACNNNNGTAYC 2 cut(s) 2598, 2631
BanI GGYRCC 1 cut(s) 1616
BanII GRGCYC 2 cut(s) 1363, 2401
BauI CACGAG 1 cut(s) 2298
BbsI GAAGAC 2 cut(s) 1606, 2739
Bbv12I GWGCWC 2 cut(s) 1564, 2297
BceAI ACGGC 3 cut(s) 1307, 1764, 1814
BcgI CGANNNNNNTGC 2 cut(s) 2886, 2920
BciT130I CCWGG 4 cut(s) 806, 1157, 1848, 2519
BclI TGATCA 5 cut(s) 571, 739, 823, 1455, 1770
BcnI CCSGG 2 cut(s) 155, 2396
BcoDI GTCTC 4 cut(s) 9, 635, 2156, 3070
BfaI CTAG 2 cut(s) 645, 1365
BfmI CTRYAG 3 cut(s) 207, 374, 2713
BfoI RGCGCY 1 cut(s) 604
BfuAI ACCTGC 2 cut(s) 381, 1571
BglI GCCNNNNNGGC 3 cut(s) 563, 785, 815
BglII AGATCT 1 cut(s) 2717
BlpI GCTNAGC 1 cut(s) 597
Bme1390I CCNGG 6 cut(s) 155, 806, 1157, 1848, 2396, 2519
Bme18I GGWCC 7 cut(s) 370, 433, 1015, 1295, 1650, 2377, 2392
BmeT110I CYCGRG 1 cut(s) 2747
BmgBI CACGTC 2 cut(s) 49, 270
BmiI GGNNCC 8 cut(s) 803, 1297, 1314, 1362, 1618, 1652, 2399, 2745
BmrFI CCNGG 6 cut(s) 155, 806, 1157, 1848, 2396, 2519
BmrI ACTGGG 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 514
BoxI GACNNNNGTC 1 cut(s) 3082
BpiI GAAGAC 2 cut(s) 1606, 2739
BplI GAGNNNNNCTC 4 cut(s) 590, 622, 1106, 1138
BpmI CTGGAG 3 cut(s) 19, 2247, 3147
Bpu10I CCTNAGC 2 cut(s) 1988, 2550
Bpu1102I GCTNAGC 1 cut(s) 597
BpuEI CTTGAG 3 cut(s) 592, 1842, 2311
BpuMI CCSGG 2 cut(s) 155, 2396
BsaBI GATNNNNATC 1 cut(s) 2364
BsaHI GRCGYC 1 cut(s) 1393
BsaJI CCNNGG 5 cut(s) 153, 232, 558, 2311, 2508
BsaXI ACNNNNNCTCC 6 cut(s) 909, 939, 1345, 1375, 1634, 1664
Bsc4I CCNNNNNNNGG 6 cut(s) 170, 536, 1162, 2020, 2113, 2386
Bse1I ACTGG 6 cut(s) 509, 1297, 1514, 1618, 2211, 2818
Bse3DI GCAATG 1 cut(s) 1419
Bse8I GATNNNNATC 1 cut(s) 2364
BseBI CCWGG 4 cut(s) 806, 1157, 1848, 2519
BseDI CCNNGG 5 cut(s) 153, 232, 558, 2311, 2508
BseJI GATNNNNATC 1 cut(s) 2364
BseLI CCNNNNNNNGG 6 cut(s) 170, 536, 1162, 2020, 2113, 2386
BseMI GCAATG 1 cut(s) 1419
BseNI ACTGG 6 cut(s) 509, 1297, 1514, 1618, 2211, 2818
BseRI GAGGAG 7 cut(s) 378, 635, 638, 1828, 2063, 2705, 3199
BseSI GKGCMC 2 cut(s) 2121, 2401
BseYI CCCAGC 1 cut(s) 3064
BshNI GGYRCC 1 cut(s) 1616
BsiHKAI GWGCWC 2 cut(s) 1564, 2297
BsiHKCI CYCGRG 1 cut(s) 2747
BsiSI CCGG 4 cut(s) 155, 2304, 2395, 2523
BslFI GGGAC 4 cut(s) 49, 1636, 2251, 2620
BslI CCNNNNNNNGG 6 cut(s) 170, 536, 1162, 2020, 2113, 2386
BsmAI GTCTC 4 cut(s) 9, 635, 2156, 3070
BsmBI CGTCTC 1 cut(s) 2156
BsmFI GGGAC 4 cut(s) 49, 1636, 2251, 2620
BsoBI CYCGRG 1 cut(s) 2747
Bsp120I GGGCCC 1 cut(s) 2397
Bsp1286I GDGCHC 5 cut(s) 1363, 1564, 2121, 2297, 2401
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 558
BspHI TCATGA 2 cut(s) 1476, 1552
BspLI GGNNCC 8 cut(s) 803, 1297, 1314, 1362, 1618, 1652, 2399, 2745
BspMAI CTGCAG 2 cut(s) 211, 378
BspMI ACCTGC 2 cut(s) 381, 1571
BspPI GGATC 2 cut(s) 1737, 2461
BspQI GCTCTTC 1 cut(s) 3084
BspT107I GGYRCC 1 cut(s) 1616
BsrBI CCGCTC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 1419
BsrI ACTGG 6 cut(s) 509, 1297, 1514, 1618, 2211, 2818
BssECI CCNNGG 5 cut(s) 153, 232, 558, 2311, 2508
BssNI GRCGYC 1 cut(s) 1393
BssSI CACGAG 1 cut(s) 2298
BssT1I CCWWGG 4 cut(s) 232, 558, 2311, 2508
Bst2BI CACGAG 1 cut(s) 2298
Bst2UI CCWGG 4 cut(s) 806, 1157, 1848, 2519
Bst4CI ACNGT 7 cut(s) 173, 534, 1046, 2341, 2357, 2841, 2871
Bst6I CTCTTC 7 cut(s) 612, 2457, 2554, 2655, 2914, 3068, 3084
BstACI GRCGYC 1 cut(s) 1393
BstAPI GCANNNNNTGC 1 cut(s) 1724
BstC8I GCNNGC 6 cut(s) 389, 414, 1637, 1967, 2481, 2624
BstDSI CCRYGG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 6 cut(s) 77, 525, 603, 2043, 2586, 2823
BstMAI GTCTC 4 cut(s) 9, 635, 2156, 3070
BstNI CCWGG 4 cut(s) 806, 1157, 1848, 2519
BstNSI RCATGY 2 cut(s) 1882, 2038
BstPAI GACNNNNGTC 1 cut(s) 3082
BstSCI CCNGG 6 cut(s) 153, 804, 1155, 1846, 2394, 2517
BstSFI CTRYAG 3 cut(s) 207, 374, 2713
BstSLI GKGCMC 2 cut(s) 2121, 2401
BstV2I GAAGAC 2 cut(s) 1606, 2739
BstX2I RGATCY 1 cut(s) 2717
BstYI RGATCY 1 cut(s) 2717
BtgI CCRYGG 1 cut(s) 558
BtrI CACGTC 2 cut(s) 49, 270
BtsIMutI CAGTG 5 cut(s) 530, 1290, 2362, 2811, 2876
BveI ACCTGC 2 cut(s) 381, 1571
Cac8I GCNNGC 6 cut(s) 389, 414, 1637, 1967, 2481, 2624
CaiI CAGNNNCTG 1 cut(s) 1975
CciI TCATGA 2 cut(s) 1476, 1552
CfoI GCGC 6 cut(s) 77, 525, 603, 2043, 2586, 2823
CsiI ACCWGGT 1 cut(s) 1155
Csp6I GTAC 6 cut(s) 960, 1513, 1617, 2592, 2615, 2837
CviQI GTAC 6 cut(s) 960, 1513, 1617, 2592, 2615, 2837
DraI TTTAAA 1 cut(s) 946
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 7 cut(s) 612, 2457, 2554, 2655, 2914, 3068, 3084
EarI CTCTTC 7 cut(s) 612, 2457, 2554, 2655, 2914, 3068, 3084
EciI GGCGGA 1 cut(s) 2402
Eco130I CCWWGG 4 cut(s) 232, 558, 2311, 2508
Eco147I AGGCCT 2 cut(s) 809, 2310
Eco24I GRGCYC 2 cut(s) 1363, 2401
Eco47I GGWCC 7 cut(s) 370, 433, 1015, 1295, 1650, 2377, 2392
Eco57I CTGAAG 4 cut(s) 462, 984, 1002, 3108
Eco88I CYCGRG 1 cut(s) 2747
EcoO109I RGGNCCY 2 cut(s) 370, 1165
EcoRI GAATTC 1 cut(s) 1346
EcoRII CCWGG 4 cut(s) 804, 1155, 1846, 2517
EcoT14I CCWWGG 4 cut(s) 232, 558, 2311, 2508
EcoT22I ATGCAT 1 cut(s) 474
EcoT38I GRGCYC 2 cut(s) 1363, 2401
ErhI CCWWGG 4 cut(s) 232, 558, 2311, 2508
Esp3I CGTCTC 1 cut(s) 2156
FaqI GGGAC 4 cut(s) 49, 1636, 2251, 2620
FauI CCCGC 1 cut(s) 2107
FbaI TGATCA 5 cut(s) 571, 739, 823, 1455, 1770
FblI GTMKAC 2 cut(s) 1783, 2092
FokI GGATG 9 cut(s) 170, 200, 468, 1073, 1189, 2222, 2501, 2699, 2887
FriOI GRGCYC 2 cut(s) 1363, 2401
FspBI CTAG 2 cut(s) 645, 1365
FspI TGCGCA 2 cut(s) 524, 2585
GlaI GCGC 6 cut(s) 76, 524, 602, 2042, 2585, 2822
GsaI CCCAGC 1 cut(s) 3068
GsuI CTGGAG 3 cut(s) 19, 2247, 3147
HaeII RGCGCY 1 cut(s) 604
HapII CCGG 4 cut(s) 155, 2304, 2395, 2523
HhaI GCGC 6 cut(s) 77, 525, 603, 2043, 2586, 2823
Hin1I GRCGYC 1 cut(s) 1393
Hin6I GCGC 6 cut(s) 75, 523, 601, 2041, 2584, 2821
HinP1I GCGC 6 cut(s) 75, 523, 601, 2041, 2584, 2821
HincII GTYRAC 3 cut(s) 333, 1611, 3060
HindII GTYRAC 3 cut(s) 333, 1611, 3060
HindIII AAGCTT 2 cut(s) 410, 2909
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 4 cut(s) 155, 2304, 2395, 2523
HphI GGTGA 4 cut(s) 185, 998, 1120, 3037
Hpy166II GTNNAC 7 cut(s) 52, 333, 1015, 1611, 1784, 2093, 3060
Hpy8I GTNNAC 7 cut(s) 52, 333, 1015, 1611, 1784, 2093, 3060
Hpy99I CGWCG 5 cut(s) 131, 173, 274, 726, 1599
HpyCH4III ACNGT 7 cut(s) 173, 534, 1046, 2341, 2357, 2841, 2871
HpyCH4IV ACGT 9 cut(s) 48, 126, 256, 269, 304, 721, 1355, 1393, 3158
HpySE526I ACGT 9 cut(s) 48, 126, 256, 269, 304, 721, 1355, 1393, 3158
Hsp92I GRCGYC 1 cut(s) 1393
HspAI GCGC 6 cut(s) 75, 523, 601, 2041, 2584, 2821
KpnI GGTACC 1 cut(s) 1620
Ksp22I TGATCA 5 cut(s) 571, 739, 823, 1455, 1770
KspAI GTTAAC 1 cut(s) 333
LguI GCTCTTC 1 cut(s) 3084
LmnI GCTCC 7 cut(s) 38, 917, 1318, 1366, 2266, 2894, 3035
MabI ACCWGGT 1 cut(s) 1155
MaeI CTAG 2 cut(s) 645, 1365
MaeII ACGT 9 cut(s) 48, 126, 256, 269, 304, 721, 1355, 1393, 3158
MaeIII GTNAC 8 cut(s) 173, 1049, 1108, 1288, 1874, 1912, 2000, 2995
MbiI CCGCTC 1 cut(s) 438
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 2717
MhlI GDGCHC 5 cut(s) 1363, 1564, 2121, 2297, 2401
MlyI GAGTC 4 cut(s) 971, 2140, 2233, 2261
MmeI TCCRAC 6 cut(s) 159, 523, 704, 981, 2431, 2550
Mph1103I ATGCAT 1 cut(s) 474
MslI CAYNNNNRTG 2 cut(s) 842, 1557
MspA1I CMGCKG 3 cut(s) 931, 1069, 3125
MspI CCGG 4 cut(s) 155, 2304, 2395, 2523
MspR9I CCNGG 6 cut(s) 155, 806, 1157, 1848, 2396, 2519
MunI CAATTG 1 cut(s) 695
MvaI CCWGG 4 cut(s) 806, 1157, 1848, 2519
NciI CCSGG 2 cut(s) 155, 2396
NcoI CCATGG 1 cut(s) 558
NlaIV GGNNCC 8 cut(s) 803, 1297, 1314, 1362, 1618, 1652, 2399, 2745
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 5 cut(s) 173, 1049, 1108, 1288, 1874
NsbI TGCGCA 2 cut(s) 524, 2585
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 2 cut(s) 1882, 2038
PagI TCATGA 2 cut(s) 1476, 1552
PceI AGGCCT 2 cut(s) 809, 2310
PciI ACATGT 2 cut(s) 1878, 2034
PciSI GCTCTTC 1 cut(s) 3084
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 6 cut(s) 290, 1025, 1549, 2124, 2365, 3007
PflFI GACNNNGTC 2 cut(s) 47, 61
PflMI CCANNNNNTGG 1 cut(s) 536
PfoI TCCNGGA 1 cut(s) 1846
PleI GAGTC 4 cut(s) 971, 2140, 2233, 2261
PpsI GAGTC 4 cut(s) 971, 2140, 2233, 2261
PpuMI RGGWCCY 1 cut(s) 370
PscI ACATGT 2 cut(s) 1878, 2034
PshAI GACNNNNGTC 1 cut(s) 3082
PshBI ATTAAT 1 cut(s) 284
PsiI TTATAA 1 cut(s) 2031
Psp1406I AACGTT 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 4 cut(s) 804, 1155, 1846, 2517
PspFI CCCAGC 1 cut(s) 3064
PspGI CCWGG 4 cut(s) 804, 1155, 1846, 2517
PspN4I GGNNCC 8 cut(s) 803, 1297, 1314, 1362, 1618, 1652, 2399, 2745
PspOMI GGGCCC 1 cut(s) 2397
PspPPI RGGWCCY 1 cut(s) 370
PstI CTGCAG 2 cut(s) 211, 378
PstNI CAGNNNCTG 1 cut(s) 1975
PsuI RGATCY 1 cut(s) 2717
PsyI GACNNNGTC 2 cut(s) 47, 61
PvuII CAGCTG 1 cut(s) 3125
RsaI GTAC 6 cut(s) 961, 1514, 1618, 2593, 2616, 2838
RsaNI GTAC 6 cut(s) 960, 1513, 1617, 2592, 2615, 2837
RseI CAYNNNNRTG 2 cut(s) 842, 1557
SapI GCTCTTC 1 cut(s) 3084
SchI GAGTC 4 cut(s) 971, 2140, 2233, 2261
ScrFI CCNGG 6 cut(s) 155, 806, 1157, 1848, 2396, 2519
SduI GDGCHC 5 cut(s) 1363, 1564, 2121, 2297, 2401
SexAI ACCWGGT 1 cut(s) 1155
SfcI CTRYAG 3 cut(s) 207, 374, 2713
SinI GGWCC 7 cut(s) 370, 433, 1015, 1295, 1650, 2377, 2392
SmiMI CAYNNNNRTG 2 cut(s) 842, 1557
SmlI CTYRAG 3 cut(s) 607, 1857, 2290
SmoI CTYRAG 3 cut(s) 607, 1857, 2290
SseBI AGGCCT 2 cut(s) 809, 2310
SspMI CTAG 2 cut(s) 645, 1365
StuI AGGCCT 2 cut(s) 809, 2310
StyD4I CCNGG 6 cut(s) 153, 804, 1155, 1846, 2394, 2517
StyI CCWWGG 4 cut(s) 232, 558, 2311, 2508
TaaI ACNGT 7 cut(s) 173, 534, 1046, 2341, 2357, 2841, 2871
TaiI ACGT 9 cut(s) 51, 129, 259, 272, 307, 724, 1358, 1396, 3161
TauI GCSGC 4 cut(s) 149, 152, 934, 1072
TfiI GAWTC 6 cut(s) 290, 1025, 1549, 2124, 2365, 3007
TscAI CASTG 5 cut(s) 537, 1297, 2362, 2818, 2876
TseFI GTSAC 5 cut(s) 173, 1049, 1108, 1288, 1874
Tsp45I GTSAC 5 cut(s) 173, 1049, 1108, 1288, 1874
TspGWI ACGGA 2 cut(s) 455, 3009
TspRI CASTG 5 cut(s) 537, 1297, 2362, 2818, 2876
Tth111I GACNNNGTC 2 cut(s) 47, 61
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 7 cut(s) 370, 433, 1015, 1295, 1650, 2377, 2392
VspI ATTAAT 1 cut(s) 284
XceI RCATGY 2 cut(s) 1882, 2038
XmiI GTMKAC 2 cut(s) 1783, 2092
XspI CTAG 2 cut(s) 645, 1365
ZraI GACGTC 1 cut(s) 1394
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.