Rh4AG208500
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011969
Physical Location & Seq
Reverse (-)
49968354 .. 49976061
7708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG208500.1

Sequence Viewer

Length: 2787 bp
ATGTGTCCTTCTTGGCAAGGACTTCTTTTCTATCAGCTTGCAGAATTGCAAAACAAGGTGCGTTCTGATGTGAGTTCAGAATACTTGCTCCGCATGAGCTGCTCTTCTCCGGACAAAACATTGTTTGATTGGGGAAGGATGCGATTGCCCCGTCCACTCTATGGTGTTGGAGATGCATTTGCCGTGGAGGCTGACGATCAGTTCAGGAAAAAACGAGATGCTGAGAGGCTCTCAAGGTTACAAGAGGAGGAGAAGAATAATATTGAGACTAGAAAACGAAAATTTTTCGCGGAAGTGCTTAATGGTGTTCTTGAATATCAATTGCAAATTCAGGCTTCTATGGCTCGTCGAAAACGAAGGAATGATTTTGTCCAGGGGTGGCATGCAAAGCAAAAACAACGTGCTACTCGAGCTGAGAAATTGCGATTCCAAGCATTGAAGTCTGATGACCAGGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAGAGACTGACATTGCTTCTTGAAGAAACGAATAAACTCCTTGTCAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATTCTAAACATACAGAGGACATTGAATCTTTAAAAGACTCAGAAGGTGATTTGACTGAGTTGGAAGAGGATGTGGAGATCATTGATTCTGATCGCAATGATGATGGTAGTGACTTGCTTAAAGGTCAGCGGCAATATAACTCTGCCATCCATTCTATCCAGGAACAGGTAACCGAGCAACCTTCAATGCTTGAAGGTGGAGAGTTAAGGCCCTACCAATTGGAGGGTCTACAATGGATGCTCTCCTTGTTCAATAACAATCTAAACGGTATATTGGCTGACGAGATGGGATTGGGTAAAACTATACAAACCATTTCATTGATTGCATATCTCATTGAAAACAAGGGTGTCACTGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTATTACCAAATTGGGTTACTGAATTCGCAACATGGGCTCCTAGTATTAAGGCCATTCTTTATGACGGGCGCCAAGAGGAAAGAAAGGCAATGAAGGAAGAATTATCAGGGGAAGGAAAATTTAATGTATTGATCACACATTATGACCTTATCATGAGGGATAAACAATTTTTGAAGAAGATTAGCTGGGCTTACCTGATCGTTGACGAAGGGCATCGGTTGAAAAATTCTGAGTGTGCTCTCGCTATCACACTTGCAGGCTATGACATGCGACGTAGACTTCTGTTGACTGGCACGCCAATACAGAATAGCTTGCAGGAGTTGTGGTCCCTACTCAATTTTCTTCTCCCACACATTTTCAATTCAGTTCAGAATTTTGAGGAATGGTTTAATGCACCTTTTGCGGATCGGGGTGATATGTCTCTTACGGAGGAAGAACAGCTATTGATCATTCGACGTCTACATCAAGTTATAAGGCCATTCATATTGAGGAGGAAAAAAGATGAAGTTGAGAAATTCCTTCCTGGAAAATCCCAAGTCATACTGAAATGCGACATGTCATCATGGCAGAAAGTATATTATCGACAAGTTACAGATGTGGGCAGGGTCGGGCTAGATAATGGTTCGGGGAAATCAAAGAGCTTGCAGAACCTAACCATGCAGCTCAGAAAGTGTTGTAACCACCCGTACCTTTTTGTTGTGGGAGATTATAACATCTGGCGTCAGGAGGAGATCGTAAGAGCATCAGGAAAATTTGAACTGCTCGATCGTCTACTCCCAAAACTCCAAAAGGCGGGGCATAGAGTCTTGCTTTTCTCACAAATGACTCGCCTCATGGATATTCTTGAAGTTTATCTGCAGCTTCACCATTTCCAGTATCTTCGATTGGATGGTTCAACAAAAACTGAGGAAAGAGGGACTCTGCTAAAGAGATTCAATGCTCCAGACTCTCCTTACTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAATCCGCAGATACAGTTATAATTTTTGATAGTGATTGGAATCCTCAAATGGATCAACAGGCAGAGGATCGAGCCCATCGTATAGGTCAAAAGAAAGAAGTCAGGGTATTTGTGTTGGTTAGTGTTGGATCCATTGAAGAAGTAATTTTGGAGCGTGCTAAACAGAAGATGGGAATAGATGCCAAGGTCATCCAGGCCGGACTGTTCAATACAACTTCCACAGCTCAGGACAGAAGAGATATGTTGGAGGAAATCATGCGCAAGGGTACAAGTTCACTTGGCACAGACGTGCCAAGCGAGAGAGAAATCAACCGCCTTGCTGCCAGATCAGATGACGAGTTCCGGATGTTTGAGAAAATGGATGCTGAGAGAAGGCAAAAGGAGAATTATAGATCTCGCCTAATGGAAGAGCATGAGGTTCCTGAGTGGGCATATTCAGCACCTGATAAGGTTACAGCTTCCAAAGGATTTGATTATAGCAATGTCTCGGGAAAGCGGCCAAGAAAGGAGGTACGTTCTTATGCTGATGGCCTTAGTGATCTACAGTTTATGAAAGCTGTAGAAAGTGGAGAAGATGTATCGATGTTTTCCGGTAAAGGAAAGAGGAAAAATCTTTTTCCATCTAAGAGCAGTGTTGTACCTTTGAATGAAAATGTGCCGGTGGTCAGTGGAAGTGAAGAGACATATGGTTTGACCCCACCTTCAAAGAGACACAAGTCTGAAGGACCAAATATAGTGAAACACGAAAGTCATGCAGGAGTTTTCAAAATTACTAGAAAGAAGAGATCAAATTCATCCTCCGACAGTAAAGGCCGAAATTCCAACGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

928

Amino Acids

106.73

Weight (kDa)

8.81

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 256 - 417 2.3e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 260 - 547 5.4e-93 SNF2-related domain
HDA2-3 PF11496 528 - 706 1.9e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 567 - 680 9.3e-26 Helicase conserved C-terminal domain
SnAC PF14619 771 - 835 9.1e-09 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1421, 1659, 1973
AatII GACGTC 1 cut(s) 1408
Acc16I TGCGCA 1 cut(s) 2213
AccB1I GGYRCC 1 cut(s) 1017
AccB7I CCANNNNNTGG 1 cut(s) 161
AccI GTMKAC 4 cut(s) 793, 1225, 1408, 1720
AccII CGCG 1 cut(s) 290
AccIII TCCGGA 2 cut(s) 109, 2295
AciI CCGC 8 cut(s) 91, 290, 694, 1352, 1742, 1959, 2266, 2449
AclWI GGATC 5 cut(s) 1362, 2013, 2028, 2076, 2089
AcoI YGGCCR 1 cut(s) 2450
AcuI CTGAAG 1 cut(s) 2694
AcyI GRCGYC 3 cut(s) 1018, 1405, 1669
AfaI GTAC 4 cut(s) 1637, 2221, 2466, 2592
AfiI CCNNNNNNNGG 4 cut(s) 161, 730, 787, 1741
AflIII ACRYGT 1 cut(s) 1503
AjiI CACGTC 1 cut(s) 2242
AjnI CCWGG 5 cut(s) 372, 450, 723, 1471, 2145
AleI CACNNNNGTG 1 cut(s) 2240
AloI GAACNNNNNNTCC 4 cut(s) 534, 566, 1940, 1972
Alw21I GWGCWC 2 cut(s) 1189, 1925
Alw26I GTCTC 6 cut(s) 260, 487, 1374, 2443, 2627, 2656
AlwI GGATC 5 cut(s) 1362, 2013, 2028, 2076, 2089
AlwNI CAGNNNCTG 1 cut(s) 2396
Ama87I CYCGRG 2 cut(s) 408, 2440
Aor13HI TCCGGA 2 cut(s) 109, 2295
AoxI GGCC 8 cut(s) 773, 920, 999, 1424, 2148, 2450, 2482, 2764
ApaI GGGCCC 1 cut(s) 924
ApeKI GCWGC 5 cut(s) 99, 545, 1609, 1807, 2273
ArsI GACNNNNNNTTYG 2 cut(s) 2626, 2658
AspLEI GCGC 2 cut(s) 1020, 2214
AspS9I GGNCC 5 cut(s) 774, 920, 921, 1275, 2678
AsuHPI GGTGA 3 cut(s) 623, 1373, 1805
AvaI CYCGRG 2 cut(s) 408, 2440
AvaII GGWCC 2 cut(s) 1275, 2678
BaeGI GKGCMC 1 cut(s) 924
BamHI GGATCC 1 cut(s) 2081
BanI GGYRCC 1 cut(s) 1017
BanII GRGCYC 3 cut(s) 924, 988, 2029
BauI CACGAG 1 cut(s) 1926
Bbv12I GWGCWC 2 cut(s) 1189, 1925
BbvI GCAGC 5 cut(s) 86, 532, 1621, 1819, 2260
BccI CCATC 8 cut(s) 662, 719, 844, 1832, 2037, 2116, 2474, 2581
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 2687, 2721
BciT130I CCWGG 5 cut(s) 374, 452, 725, 1473, 2147
BclI TGATCA 2 cut(s) 1080, 1395
BcoDI GTCTC 6 cut(s) 260, 487, 1374, 2443, 2627, 2656
BfaI CTAG 4 cut(s) 270, 990, 1562, 2727
BfmI CTRYAG 3 cut(s) 1805, 2495, 2511
BfoI RGCGCY 1 cut(s) 1021
BglI GCCNNNNNGGC 1 cut(s) 188
BglII AGATCT 1 cut(s) 2345
BisI GCNGC 7 cut(s) 100, 546, 695, 1610, 1808, 2274, 2450
BlsI GCNGC 7 cut(s) 101, 547, 696, 1611, 1809, 2275, 2451
Bme1390I CCNGG 5 cut(s) 374, 452, 725, 1473, 2147
Bme18I GGWCC 2 cut(s) 1275, 2678
BmeT110I CYCGRG 2 cut(s) 408, 2440
BmgBI CACGTC 1 cut(s) 2242
BmgT120I GGNCC 5 cut(s) 774, 920, 921, 1275, 2678
BmiI GGNNCC 8 cut(s) 922, 923, 939, 987, 1019, 1277, 2083, 2373
BmrFI CCNGG 5 cut(s) 374, 452, 725, 1473, 2147
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 8 cut(s) 129, 163, 208, 792, 1171, 1700, 2122, 2305
BmuI ACTGGG 1 cut(s) 927
BoxI GACNNNNGTC 1 cut(s) 2668
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 2 cut(s) 1875, 1953
Bpu10I CCTNAGC 1 cut(s) 2178
BpuEI CTTGAG 2 cut(s) 217, 1939
Bsa29I ATCGAT 1 cut(s) 2534
BsaBI GATNNNNATC 2 cut(s) 654, 1992
BsaHI GRCGYC 3 cut(s) 1018, 1405, 1669
BsaJI CCNNGG 3 cut(s) 183, 373, 2136
BsaWI WCCGGW 3 cut(s) 109, 2295, 2543
BsaXI ACNNNNNCTCC 8 cut(s) 534, 564, 970, 1000, 1259, 1289, 2514, 2544
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 730, 787, 1741
Bse118I RCCGGY 1 cut(s) 2611
Bse1I ACTGG 3 cut(s) 922, 1243, 1822
Bse3DI GCAATG 4 cut(s) 500, 667, 1044, 2440
Bse8I GATNNNNATC 2 cut(s) 654, 1992
BseAI TCCGGA 2 cut(s) 109, 2295
BseBI CCWGG 5 cut(s) 374, 452, 725, 1473, 2147
BseCI ATCGAT 1 cut(s) 2534
BseDI CCNNGG 3 cut(s) 183, 373, 2136
BseGI GGATG 9 cut(s) 144, 640, 711, 807, 1843, 2142, 2304, 2320, 2747
BseJI GATNNNNATC 2 cut(s) 654, 1992
BseLI CCNNNNNNNGG 4 cut(s) 161, 730, 787, 1741
BseMI GCAATG 4 cut(s) 500, 667, 1044, 2440
BseNI ACTGG 3 cut(s) 922, 1243, 1822
BseRI GAGGAG 4 cut(s) 260, 263, 1453, 1691
BseSI GKGCMC 1 cut(s) 924
BseXI GCAGC 5 cut(s) 86, 532, 1621, 1819, 2260
BseYI CCCAGC 1 cut(s) 1134
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 1717
BshFI GGCC 8 cut(s) 775, 922, 1001, 1426, 2150, 2452, 2484, 2766
BshNI GGYRCC 1 cut(s) 1017
BshVI ATCGAT 1 cut(s) 2534
BsiEI CGRYCG 1 cut(s) 1717
BsiHKAI GWGCWC 2 cut(s) 1189, 1925
BsiHKCI CYCGRG 2 cut(s) 408, 2440
BsiSI CCGG 5 cut(s) 110, 2151, 2296, 2544, 2612
BslFI GGGAC 2 cut(s) 1261, 1879
BslI CCNNNNNNNGG 4 cut(s) 161, 730, 787, 1741
BsmAI GTCTC 6 cut(s) 260, 487, 1374, 2443, 2627, 2656
BsmFI GGGAC 2 cut(s) 1261, 1879
BsnI GGCC 8 cut(s) 775, 922, 1001, 1426, 2150, 2452, 2484, 2766
BsoBI CYCGRG 2 cut(s) 408, 2440
Bsp120I GGGCCC 1 cut(s) 920
Bsp1286I GDGCHC 5 cut(s) 924, 988, 1189, 1925, 2029
Bsp13I TCCGGA 2 cut(s) 109, 2295
BspACI CCGC 8 cut(s) 91, 290, 694, 1352, 1742, 1959, 2266, 2449
BspANI GGCC 8 cut(s) 775, 922, 1001, 1426, 2150, 2452, 2484, 2766
BspDI ATCGAT 1 cut(s) 2534
BspEI TCCGGA 2 cut(s) 109, 2295
BspFNI CGCG 1 cut(s) 290
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 8 cut(s) 922, 923, 939, 987, 1019, 1277, 2083, 2373
BspMAI CTGCAG 1 cut(s) 1809
BspPI GGATC 5 cut(s) 1362, 2013, 2028, 2076, 2089
BspQI GCTCTTC 2 cut(s) 109, 2355
BspT107I GGYRCC 1 cut(s) 1017
BsrDI GCAATG 4 cut(s) 500, 667, 1044, 2440
BsrFI RCCGGY 1 cut(s) 2611
BsrI ACTGG 3 cut(s) 922, 1243, 1822
BssAI RCCGGY 1 cut(s) 2611
BssECI CCNNGG 3 cut(s) 183, 373, 2136
BssNI GRCGYC 3 cut(s) 1018, 1405, 1669
BssSI CACGAG 1 cut(s) 1926
BssT1I CCWWGG 1 cut(s) 2136
Bst2BI CACGAG 1 cut(s) 1926
Bst2UI CCWGG 5 cut(s) 374, 452, 725, 1473, 2147
Bst4CI ACNGT 5 cut(s) 833, 1969, 2157, 2499, 2759
Bst6I CTCTTC 6 cut(s) 109, 624, 2182, 2355, 2625, 2729
BstACI GRCGYC 3 cut(s) 1018, 1405, 1669
BstAPI GCANNNNNTGC 2 cut(s) 99, 1349
BstC8I GCNNGC 7 cut(s) 39, 384, 1207, 1244, 1262, 1592, 2109
BstDSI CCRYGG 1 cut(s) 183
BstEII GGTNACC 1 cut(s) 733
BstF5I GGATG 9 cut(s) 144, 640, 711, 807, 1843, 2142, 2304, 2320, 2747
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 1 cut(s) 1021
BstHHI GCGC 2 cut(s) 1020, 2214
BstMAI GTCTC 6 cut(s) 260, 487, 1374, 2443, 2627, 2656
BstMCI CGRYCG 1 cut(s) 1717
BstMWI GCNNNNNNNGC 9 cut(s) 99, 188, 341, 388, 410, 944, 983, 1349, 2390
BstNI CCWGG 5 cut(s) 374, 452, 725, 1473, 2147
BstNSI RCATGY 3 cut(s) 386, 1219, 1507
BstPAI GACNNNNGTC 1 cut(s) 2668
BstPI GGTNACC 1 cut(s) 733
BstSCI CCNGG 5 cut(s) 372, 450, 723, 1471, 2145
BstSFI CTRYAG 3 cut(s) 1805, 2495, 2511
BstSLI GKGCMC 1 cut(s) 924
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 5 cut(s) 86, 532, 1621, 1819, 2260
BstX2I RGATCY 2 cut(s) 2081, 2345
BstYI RGATCY 2 cut(s) 2081, 2345
Bsu15I ATCGAT 1 cut(s) 2534
BsuRI GGCC 8 cut(s) 775, 922, 1001, 1426, 2150, 2452, 2484, 2766
BsuTUI ATCGAT 1 cut(s) 2534
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 2242
BtsCI GGATG 9 cut(s) 144, 640, 711, 807, 1843, 2142, 2304, 2320, 2747
BtsI GCAGTG 1 cut(s) 2590
BtsIMutI CAGTG 3 cut(s) 915, 2590, 2626
Cac8I GCNNGC 7 cut(s) 39, 384, 1207, 1244, 1262, 1592, 2109
CaiI CAGNNNCTG 1 cut(s) 2396
CciI TCATGA 1 cut(s) 1101
CfoI GCGC 2 cut(s) 1020, 2214
Cfr10I RCCGGY 1 cut(s) 2611
Cfr13I GGNCC 5 cut(s) 774, 920, 921, 1275, 2678
ClaI ATCGAT 1 cut(s) 2534
CseI GACGC 1 cut(s) 1658
Csp6I GTAC 4 cut(s) 1636, 2220, 2465, 2591
CviQI GTAC 4 cut(s) 1636, 2220, 2465, 2591
DinI GGCGCC 1 cut(s) 1019
DraI TTTAAA 1 cut(s) 597
EaeI YGGCCR 1 cut(s) 2450
Eam1104I CTCTTC 6 cut(s) 109, 624, 2182, 2355, 2625, 2729
EarI CTCTTC 6 cut(s) 109, 624, 2182, 2355, 2625, 2729
Eco130I CCWWGG 1 cut(s) 2136
Eco24I GRGCYC 3 cut(s) 924, 988, 2029
Eco47I GGWCC 2 cut(s) 1275, 2678
Eco57I CTGAAG 1 cut(s) 2694
Eco88I CYCGRG 2 cut(s) 408, 2440
Eco91I GGTNACC 1 cut(s) 733
EcoO109I RGGNCCY 2 cut(s) 774, 921
EcoO65I GGTNACC 1 cut(s) 733
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 5 cut(s) 372, 450, 723, 1471, 2145
EcoT14I CCWWGG 1 cut(s) 2136
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 3 cut(s) 924, 988, 2029
EgeI GGCGCC 1 cut(s) 1019
EheI GGCGCC 1 cut(s) 1019
ErhI CCWWGG 1 cut(s) 2136
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 2 cut(s) 1261, 1879
FauI CCCGC 1 cut(s) 1735
FauNDI CATATG 1 cut(s) 2638
FbaI TGATCA 2 cut(s) 1080, 1395
FblI GTMKAC 4 cut(s) 793, 1225, 1408, 1720
Fnu4HI GCNGC 7 cut(s) 100, 546, 695, 1610, 1808, 2274, 2450
FokI GGATG 9 cut(s) 151, 647, 698, 814, 1850, 2129, 2311, 2327, 2734
FriOI GRGCYC 3 cut(s) 924, 988, 2029
Fsp4HI GCNGC 7 cut(s) 100, 546, 695, 1610, 1808, 2274, 2450
FspBI CTAG 4 cut(s) 270, 990, 1562, 2727
FspI TGCGCA 1 cut(s) 2213
GlaI GCGC 2 cut(s) 1019, 2213
GluI GCNGC 7 cut(s) 100, 546, 695, 1610, 1808, 2274, 2450
GsaI CCCAGC 1 cut(s) 1138
GsuI CTGGAG 2 cut(s) 1875, 1953
HaeII RGCGCY 1 cut(s) 1021
HaeIII GGCC 8 cut(s) 775, 922, 1001, 1426, 2150, 2452, 2484, 2766
HapII CCGG 5 cut(s) 110, 2151, 2296, 2544, 2612
HgaI GACGC 1 cut(s) 1658
HhaI GCGC 2 cut(s) 1020, 2214
Hin1I GRCGYC 3 cut(s) 1018, 1405, 1669
Hin6I GCGC 2 cut(s) 1018, 2212
HinP1I GCGC 2 cut(s) 1018, 2212
HincII GTYRAC 2 cut(s) 1153, 1236
HindII GTYRAC 2 cut(s) 1153, 1236
HpaII CCGG 5 cut(s) 110, 2151, 2296, 2544, 2612
HphI GGTGA 3 cut(s) 623, 1373, 1805
Hpy166II GTNNAC 8 cut(s) 155, 794, 1153, 1226, 1236, 1409, 1721, 2228
Hpy8I GTNNAC 8 cut(s) 155, 794, 1153, 1226, 1236, 1409, 1721, 2228
Hpy99I CGWCG 3 cut(s) 351, 1224, 1407
HpyCH4III ACNGT 5 cut(s) 833, 1969, 2157, 2499, 2759
HpyCH4IV ACGT 6 cut(s) 400, 556, 1222, 1405, 2241, 2467
HpyF10VI GCNNNNNNNGC 9 cut(s) 99, 188, 341, 388, 410, 944, 983, 1349, 2390
HpySE526I ACGT 6 cut(s) 400, 556, 1222, 1405, 2241, 2467
Hsp92I GRCGYC 3 cut(s) 1018, 1405, 1669
HspAI GCGC 2 cut(s) 1018, 2212
KasI GGCGCC 1 cut(s) 1017
Kpn2I TCCGGA 2 cut(s) 109, 2295
Ksp22I TGATCA 2 cut(s) 1080, 1395
LguI GCTCTTC 2 cut(s) 109, 2355
LmnI GCTCC 6 cut(s) 93, 542, 943, 991, 1894, 2104
Lsp1109I GCAGC 5 cut(s) 86, 532, 1621, 1819, 2260
LweI GCATC 8 cut(s) 129, 163, 208, 792, 1171, 1700, 2122, 2305
MaeI CTAG 4 cut(s) 270, 990, 1562, 2727
MaeII ACGT 6 cut(s) 400, 556, 1222, 1405, 2241, 2467
MaeIII GTNAC 8 cut(s) 237, 674, 733, 913, 964, 1537, 1625, 2404
MfeI CAATTG 2 cut(s) 320, 782
MflI RGATCY 2 cut(s) 2081, 2345
MhlI GDGCHC 5 cut(s) 924, 988, 1189, 1925, 2029
Mly113I GGCGCC 1 cut(s) 1018
MlyI GAGTC 5 cut(s) 596, 1761, 1768, 1861, 1889
MmeI TCCRAC 5 cut(s) 148, 606, 2059, 2178, 2778
Mph1103I ATGCAT 1 cut(s) 178
MroI TCCGGA 2 cut(s) 109, 2295
MseI TTAA 7 cut(s) 300, 596, 684, 770, 996, 1071, 1338
MslI CAYNNNNRTG 2 cut(s) 467, 2240
MspA1I CMGCKG 1 cut(s) 694
MspI CCGG 5 cut(s) 110, 2151, 2296, 2544, 2612
MspR9I CCNGG 5 cut(s) 374, 452, 725, 1473, 2147
MunI CAATTG 2 cut(s) 320, 782
MvaI CCWGG 5 cut(s) 374, 452, 725, 1473, 2147
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 9 cut(s) 99, 188, 341, 388, 410, 944, 983, 1349, 2390
NarI GGCGCC 1 cut(s) 1018
NdeI CATATG 1 cut(s) 2638
NlaIV GGNNCC 8 cut(s) 922, 923, 939, 987, 1019, 1277, 2083, 2373
NmuCI GTSAC 2 cut(s) 674, 913
NsbI TGCGCA 1 cut(s) 2213
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 3 cut(s) 386, 1219, 1507
OliI CACNNNNGTG 1 cut(s) 2240
PaeI GCATGC 1 cut(s) 386
PaeR7I CTCGAG 1 cut(s) 408
PagI TCATGA 1 cut(s) 1101
PciI ACATGT 1 cut(s) 1503
PciSI GCTCTTC 2 cut(s) 109, 2355
PcsI WCGNNNNNNNCGW 4 cut(s) 352, 406, 2029, 2247
PfeI GAWTC 6 cut(s) 426, 566, 590, 650, 1881, 1993
PflMI CCANNNNNTGG 1 cut(s) 161
PfoI TCCNGGA 2 cut(s) 723, 1471
PkrI GCNGC 7 cut(s) 101, 547, 696, 1611, 1809, 2275, 2451
Ple19I CGATCG 1 cut(s) 1717
PleI GAGTC 5 cut(s) 596, 1760, 1768, 1861, 1889
PluTI GGCGCC 1 cut(s) 1021
PpsI GAGTC 5 cut(s) 596, 1760, 1768, 1861, 1889
PscI ACATGT 1 cut(s) 1503
PshAI GACNNNNGTC 1 cut(s) 2668
PsiI TTATAA 3 cut(s) 1421, 1659, 1973
Psp6I CCWGG 5 cut(s) 372, 450, 723, 1471, 2145
PspEI GGTNACC 1 cut(s) 733
PspFI CCCAGC 1 cut(s) 1134
PspGI CCWGG 5 cut(s) 372, 450, 723, 1471, 2145
PspN4I GGNNCC 8 cut(s) 922, 923, 939, 987, 1019, 1277, 2083, 2373
PspOMI GGGCCC 1 cut(s) 920
PspPI GGNCC 5 cut(s) 774, 920, 921, 1275, 2678
PspXI VCTCGAGB 1 cut(s) 408
PstI CTGCAG 1 cut(s) 1809
PstNI CAGNNNCTG 1 cut(s) 2396
PsuI RGATCY 2 cut(s) 2081, 2345
PvuI CGATCG 1 cut(s) 1717
RsaI GTAC 4 cut(s) 1637, 2221, 2466, 2592
RsaNI GTAC 4 cut(s) 1636, 2220, 2465, 2591
RseI CAYNNNNRTG 2 cut(s) 467, 2240
SapI GCTCTTC 2 cut(s) 109, 2355
SaqAI TTAA 7 cut(s) 300, 596, 684, 770, 996, 1071, 1338
SatI GCNGC 7 cut(s) 100, 546, 695, 1610, 1808, 2274, 2450
Sau96I GGNCC 5 cut(s) 774, 920, 921, 1275, 2678
SchI GAGTC 5 cut(s) 596, 1761, 1768, 1861, 1889
ScrFI CCNGG 5 cut(s) 374, 452, 725, 1473, 2147
SduI GDGCHC 5 cut(s) 924, 988, 1189, 1925, 2029
SfaNI GCATC 8 cut(s) 129, 163, 208, 792, 1171, 1700, 2122, 2305
SfcI CTRYAG 3 cut(s) 1805, 2495, 2511
SfoI GGCGCC 1 cut(s) 1019
Sfr274I CTCGAG 1 cut(s) 408
SinI GGWCC 2 cut(s) 1275, 2678
SlaI CTCGAG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 467, 2240
SmlI CTYRAG 3 cut(s) 232, 408, 1918
SmoI CTYRAG 3 cut(s) 232, 408, 1918
SphI GCATGC 1 cut(s) 386
SsiI CCGC 8 cut(s) 91, 290, 694, 1352, 1742, 1959, 2266, 2449
SspDI GGCGCC 1 cut(s) 1017
SspI AATATT 1 cut(s) 262
SspMI CTAG 4 cut(s) 270, 990, 1562, 2727
StyD4I CCNGG 5 cut(s) 372, 450, 723, 1471, 2145
StyI CCWWGG 1 cut(s) 2136
TaaI ACNGT 5 cut(s) 833, 1969, 2157, 2499, 2759
TaiI ACGT 6 cut(s) 403, 559, 1225, 1408, 2244, 2470
TaqI TCGA 8 cut(s) 349, 409, 1402, 1531, 1713, 1831, 2023, 2534
TauI GCSGC 2 cut(s) 697, 2452
TfiI GAWTC 6 cut(s) 426, 566, 590, 650, 1881, 1993
Tru1I TTAA 7 cut(s) 300, 596, 684, 770, 996, 1071, 1338
Tru9I TTAA 7 cut(s) 300, 596, 684, 770, 996, 1071, 1338
TscAI CASTG 3 cut(s) 922, 2590, 2626
TseFI GTSAC 2 cut(s) 674, 913
TseI GCWGC 5 cut(s) 99, 545, 1609, 1807, 2273
Tsp45I GTSAC 2 cut(s) 674, 913
TspDTI ATGAA 8 cut(s) 870, 1055, 1420, 1467, 1897, 2519, 2616, 2736
TspGWI ACGGA 1 cut(s) 1391
TspRI CASTG 3 cut(s) 922, 2590, 2626
Van91I CCANNNNNTGG 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 1275, 2678
XceI RCATGY 3 cut(s) 386, 1219, 1507
XhoI CTCGAG 1 cut(s) 408
XmiI GTMKAC 4 cut(s) 793, 1225, 1408, 1720
XspI CTAG 4 cut(s) 270, 990, 1562, 2727
ZraI GACGTC 1 cut(s) 1406
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.