MD16G1187800.v1.1
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011969
Physical Location & Seq
Forward (+)
16281288 .. 16294855
13568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1187800.v1.1.491

Sequence Viewer

Length: 3252 bp
ATGGCCGAGCTGGACAGCAGCAGCGCCAGCCTCGACCACGTCCACAAAACCAAGTCCCTGATCTGCGCCCTCAACCTCCTCTCCCGCAACCTCCCCCTCCCTCCCGACCTATTCGACGTCGTTTCCTCCATCTATGAATGCGCCCCGGATGCCCCTCTCGACGGTGACGAGGGTTTGGATGGCCCTCATAGTTCTGCTTCAGGAGAGGATTTGTTAGCAGGCCTTGGAGATGCACTGTTGGAACAACGTCAAAATTTCACCTCGGGTGCTTCATTAATAGAATCGAAGCAAAAACGTTATGAAAGCCACATTCAGCATCGGTTAACCGAACTTGAAGAATTACCTTCAAGTAGAGGAGAGGACCTGCAGACAAAGTGCTTGCTCGAACTCTATGGGCTAAAGCTTGCAGAATTGCAAAAGAAGGTTCGCTCTGAAGTGAATTCAGAATACTCACTCCGTATGCATTGTGAGCATCCTGACAAAACATTGTTTGACTGGGGCATGATGCGGTTGCGTCGTCCACTCTATGGTGTTGGAGATGCTTTTGCCATGGAGGCTGATGATCAGTTCAGGAAGAAACGAGATGCTGAGCGCCTCTCAAGGTTAGAAGAGGAGGAGAAGAACAATATCGAGACTAGGAAAAGAAAATTCTTTACAGAAATACTTAATGCTGTTCGTGAATACCAATTGCAAATTCAGGCTTCTATGAAACGTCGGAAACAGAGGAATGATCATGTCCTGAGTTGGCATGGAAAGCAAAGACAACGAGCCACACGGGCTGAGAAATTGAGGTTCCAAGCCTTAAAGGCTGATGATCAGGAAGCATACATGAGAATGGTTAAGGAGAGCAAGAATGAAAGGCTAACAATGCTTCTTGAAGAAACAAATAAACTCCTCGTTAATTTGGGAGCTGCTGTTCAACGGCAGAAAGATTCTAAACATTTAGAGGGTACTGAAGAATTGAAAGACTCTGAAGGTGATTTGACTGACTTGGAAGAAGATGTGGAGCTCATTGATTCTGATTGTAATGATGACAGTAGTGACTTGCTTAAAGGTCAGCGGCAATATAACTCAGCCATCCATTCTATTCAGGAACAGGTGACTGAGCAACCCTCCATGCTTCAAGGTGGAGAATTAAGGCCTTACCAGGTTGAGGGCCTACAATGGATGGTTTCCTTGTTTAATAACAATTTAAATGGTATTTTGGCTGACGAGATGGGTTTGGGTAAAACCATACAAACTATATCGTTGATTGCATATCTCATTGAAAACAAGGGTGTTACTGGACCCCACTTGATAGTGGCACCGAAGGCCGTACTACCAAATTGGGTTAATGAATTTGCAACATGGGCTCCTAGTATTGCTGCCGTTCTTTATGACGGACGTCAAGATGAAAGGAAGGCAATGAAAGAAGAATTATCAGGGGAAGGAAAATTTAATGTGTTGATCACACATTATGACCTTATTATGAGGGATAAACAATTTTTGAAAAAAATCAACTGGTACTACCTGATCGTTGATGAAGGGCATAGATTGAAGAATCACGAGTGTGCTCTTGCACAAACACTTGCAGGTTACGATATGCAACGTAGACTTCTGTTGACTGGTACCCCAATACAGAATAGCTTACAGGAGTTGTGGTCCCTGCTTAATTTCCTTCTCCCACACATTTTTAATTCAGTTCAGAATTTTGAGGACTGGTTTAATGCACCTTTCGCGGATCGGGGCAGTATTTCTCTTACCGATGAAGAACAGCTATTGATCATTCGCCGTCTACATCATGTTATACGGCCCTTCATACTGAGGAGGAAAAAAGATGAGGTGGAGAAGTTCCTTCCTGGAAAATCTCAAGTCATACTGAAATGTGACATGTCAGCATGGCAGAAAGTATACTATCAACAAGTTACGGATGTGGGCAGAGTTGGGCTCGATAATGGTTCTGGAAAATCAAAGAGCTTGCAGAACCTGACAATGCAACTCAGGAAGTGTTGTAACCACCCATACCTTTTTGTGGGAGATTATAACATGTGGCGCAAGGAGGAGATCATCAGGGCATCGGGAAAGTTTGAATTACTTGATCGTCTACTCCCAAAACTCTACAAAGCGGGGCACAGAATCCTGCTTTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATATGCAACTTCACGACTTTAAGTATCTTCGACTGGATGGTTCAACAAAAACTGAGGAAAGAGGGACTCTGCTTAAGAAATTTAACGCTCCAGACTCTCCTTATTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGCCTTGGTTTGAACTTACAAACGGCAGATACGGTAATAATTTTTGACAGTGATTGGAATCCCCAGATGGACCAACAGGCAGAGGATAGGGCCCATCGTATAGGTCAAAAGAAAGAAGTTAGGGTATTTGTGTTGGTTAGTGTTGGATCGATTGAAGAAGTAATTTTAGAGCGTGCTAAACAGAAGATGGGCATAGATGCCAAGGTCATCCAGGCTGGACTGTTTAATACAACTTCCACAGCGCAGGACAGAAGAGAGATGTTGGAAGAAATCATGCGCAAGGGTACAAGATCGCTTGGGGCAGATGTGCCAAGTGAGCGAGAAATCAACCGCCTTGCTGCCAGATCAGAAGAGGAGTTCTGGCTGTTTGAGAAAATGGACGAGGATAGAAGGCGAAAAGAGAACTACAGATCTCGCCTTATGGAAGACCATGAGGTTCCTGAGTGGGCATATTCAACACCTGATAAGCAAATTGCTACGAAAGGCTTTGACAGTGGCAATATCACAGGAAAGCGCAGGAGAAAGGCGGTACAGTCTTATTCTGATGGCCTTAGTGATTTACAGTGGATGAAAGCTGTGGAAAATGGAGCAGACATATCGAAGCTTTCAGGCAGAGTAAAAAAGAGAAATCACACGCAATCAGATGGCGTTGTATTAGTTAGTGGTAATGCAGGAACAGAGGAAAAAGTTACAAAATTGATTCCAAATGTTCCATTGGTGAGAGAGGGAGATAGTGAAGATACCTACGTGTTGACACCAGCCTCGAAGAGACACAAGTCTGAAGGGCCTAAAATAGAGAAACAGGAAAGTCACGCAGCTGGAGGAAGTAGTTTGAATGGTCCTATCTTGACGTTCAAGATACATCGGAAGAAGAGATCAAGCTATGTTAACCCAAGTTCATCCTCTGATGGCAGAGGGCAAAATGCCAATGTCAGAGGAAATGGATGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

1084

Amino Acids

123.78

Weight (kDa)

6.75

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 378 - 539 8.6e-12 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 382 - 669 2.8e-94 SNF2-related domain
HDA2-3 PF11496 650 - 827 2.1e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 688 - 801 2.2e-25 Helicase conserved C-terminal domain
SnAC PF14619 894 - 956 1e-08 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2022
AatII GACGTC 2 cut(s) 120, 1387
Acc16I TGCGCA 1 cut(s) 2576
Acc36I ACCTGC 2 cut(s) 372, 1562
Acc65I GGTACC 1 cut(s) 1607
AccB1I GGYRCC 2 cut(s) 1303, 1607
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 4 cut(s) 1591, 1774, 1890, 2083
AccII CGCG 1 cut(s) 1718
AciI CCGC 7 cut(s) 85, 508, 1060, 1718, 2105, 2629, 2825
AclI AACGTT 1 cut(s) 295
AclWI GGATC 2 cut(s) 1728, 2452
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 9 cut(s) 253, 439, 647, 693, 1337, 1433, 1687, 2160, 2243
AcuI CTGAAG 5 cut(s) 183, 453, 975, 993, 3099
AcyI GRCGYC 2 cut(s) 117, 1384
AfaI GTAC 6 cut(s) 952, 1317, 1505, 1609, 2584, 2829
AfiI CCNNNNNNNGG 4 cut(s) 161, 527, 1153, 2011
AflII CTTAAG 1 cut(s) 2237
AflIII ACRYGT 3 cut(s) 1869, 2025, 3045
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 3 cut(s) 1146, 1837, 2508
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AleI CACNNNNGTG 1 cut(s) 1548
AloI GAACNNNNNNTCC 2 cut(s) 900, 932
Alw21I GWGCWC 3 cut(s) 1011, 1555, 2288
Alw26I GTCTC 3 cut(s) 626, 2147, 3061
AlwI GGATC 2 cut(s) 1728, 2452
AlwNI CAGNNNCTG 1 cut(s) 1966
Ama87I CYCGRG 1 cut(s) 262
ApaI GGGCCC 1 cut(s) 2392
ApeKI GCWGC 6 cut(s) 18, 21, 911, 1364, 2636, 3113
ApoI RAATTY 9 cut(s) 253, 439, 647, 693, 1337, 1433, 1687, 2160, 2243
ArsI GACNNNNNNTTYG 2 cut(s) 2125, 2157
AseI ATTAAT 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 1607
AspLEI GCGC 8 cut(s) 26, 68, 143, 594, 2034, 2542, 2577, 2814
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 5 cut(s) 176, 250, 989, 1111, 3028
AvaI CYCGRG 1 cut(s) 262
AvaII GGWCC 5 cut(s) 361, 1286, 1641, 2368, 3137
BaeGI GKGCMC 2 cut(s) 2112, 2392
BaeI ACNNNNGTAYC 2 cut(s) 3030, 3063
BanI GGYRCC 2 cut(s) 1303, 1607
BanII GRGCYC 4 cut(s) 1011, 1354, 1929, 2392
BauI CACGAG 2 cut(s) 1544, 2289
BbsI GAAGAC 1 cut(s) 2730
Bbv12I GWGCWC 3 cut(s) 1011, 1555, 2288
BbvI GCAGC 6 cut(s) 30, 33, 898, 1351, 2623, 3125
BceAI ACGGC 6 cut(s) 938, 1298, 1352, 1755, 1805, 2337
BcgI CGANNNNNNTGC 2 cut(s) 2877, 2911
BciT130I CCWGG 3 cut(s) 1148, 1839, 2510
BclI TGATCA 5 cut(s) 562, 730, 814, 1446, 1761
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 626, 2147, 3061
BfaI CTAG 2 cut(s) 636, 1356
BfmI CTRYAG 2 cut(s) 365, 2704
BfoI RGCGCY 2 cut(s) 27, 595
BfrI CTTAAG 1 cut(s) 2237
BfuAI ACCTGC 2 cut(s) 372, 1562
BglI GCCNNNNNGGC 3 cut(s) 554, 776, 806
BglII AGATCT 1 cut(s) 2708
BisI GCNGC 7 cut(s) 19, 22, 912, 1061, 1365, 2637, 3114
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 7 cut(s) 20, 23, 913, 1062, 1366, 2638, 3115
Bme1390I CCNGG 4 cut(s) 146, 1148, 1839, 2510
Bme18I GGWCC 5 cut(s) 361, 1286, 1641, 2368, 3137
BmeT110I CYCGRG 1 cut(s) 262
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 8 cut(s) 794, 1288, 1305, 1353, 1609, 1643, 2390, 2736
BmrFI CCNGG 4 cut(s) 146, 1148, 1839, 2510
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 9 cut(s) 139, 220, 325, 481, 495, 529, 574, 2063, 2485
BmuI ACTGGG 1 cut(s) 505
BoxI GACNNNNGTC 2 cut(s) 1383, 3073
BpiI GAAGAC 1 cut(s) 2730
BplI GAGNNNNNCTC 6 cut(s) 581, 613, 1097, 1129, 1911, 1943
BpmI CTGGAG 3 cut(s) 2238, 2316, 3138
Bpu1102I GCTNAGC 1 cut(s) 588
BpuEI CTTGAG 3 cut(s) 583, 1833, 2302
BpuMI CCSGG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 2447
BsaAI YACGTR 1 cut(s) 3046
BsaBI GATNNNNATC 1 cut(s) 2355
BsaHI GRCGYC 2 cut(s) 117, 1384
BsaJI CCNNGG 6 cut(s) 144, 223, 261, 549, 2302, 2499
BsaXI ACNNNNNCTCC 8 cut(s) 65, 95, 900, 930, 1336, 1366, 1625, 1655
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 527, 1153, 2011
Bse1I ACTGG 6 cut(s) 500, 1288, 1505, 1609, 1703, 2202
Bse3DI GCAATG 1 cut(s) 1410
Bse8I GATNNNNATC 1 cut(s) 2355
BseBI CCWGG 3 cut(s) 1148, 1839, 2510
BseCI ATCGAT 1 cut(s) 2447
BseDI CCNNGG 6 cut(s) 144, 223, 261, 549, 2302, 2499
BseJI GATNNNNATC 1 cut(s) 2355
BseLI CCNNNNNNNGG 4 cut(s) 161, 527, 1153, 2011
BseMI GCAATG 1 cut(s) 1410
BseMII CTCAG 9 cut(s) 579, 731, 771, 1086, 1095, 1793, 1993, 2208, 2730
BseNI ACTGG 6 cut(s) 500, 1288, 1505, 1609, 1703, 2202
BseRI GAGGAG 8 cut(s) 68, 369, 626, 629, 884, 1819, 2054, 2666
BseSI GKGCMC 2 cut(s) 2112, 2392
BseXI GCAGC 6 cut(s) 30, 33, 898, 1351, 2623, 3125
Bsh1236I CGCG 1 cut(s) 1718
BshNI GGYRCC 2 cut(s) 1303, 1607
BshVI ATCGAT 1 cut(s) 2447
BsiHKAI GWGCWC 3 cut(s) 1011, 1555, 2288
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 3 cut(s) 40, 1627, 2242
BslI CCNNNNNNNGG 4 cut(s) 161, 527, 1153, 2011
BsmAI GTCTC 3 cut(s) 626, 2147, 3061
BsmBI CGTCTC 1 cut(s) 2147
BsmFI GGGAC 3 cut(s) 40, 1627, 2242
BsmI GAATGC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 262
Bsp120I GGGCCC 1 cut(s) 2388
Bsp1286I GDGCHC 7 cut(s) 1011, 1354, 1555, 1929, 2112, 2288, 2392
Bsp1720I GCTNAGC 1 cut(s) 588
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 7 cut(s) 85, 508, 1060, 1718, 2105, 2629, 2825
BspCNI CTCAG 9 cut(s) 580, 732, 772, 1085, 1096, 1794, 1992, 2209, 2731
BspDI ATCGAT 1 cut(s) 2447
BspFNI CGCG 1 cut(s) 1718
BspLI GGNNCC 8 cut(s) 794, 1288, 1305, 1353, 1609, 1643, 2390, 2736
BspMAI CTGCAG 1 cut(s) 369
BspMI ACCTGC 2 cut(s) 372, 1562
BspPI GGATC 2 cut(s) 1728, 2452
BspT107I GGYRCC 2 cut(s) 1303, 1607
BspTI CTTAAG 1 cut(s) 2237
BsrDI GCAATG 1 cut(s) 1410
BsrI ACTGG 6 cut(s) 500, 1288, 1505, 1609, 1703, 2202
BssECI CCNNGG 6 cut(s) 144, 223, 261, 549, 2302, 2499
BssNAI GTATAC 1 cut(s) 1891
BssNI GRCGYC 2 cut(s) 117, 1384
BssSI CACGAG 2 cut(s) 1544, 2289
BssT1I CCWWGG 4 cut(s) 223, 549, 2302, 2499
Bst1107I GTATAC 1 cut(s) 1891
Bst2BI CACGAG 2 cut(s) 1544, 2289
Bst2UI CCWGG 3 cut(s) 1148, 1839, 2510
Bst4CI ACNGT 9 cut(s) 164, 237, 1037, 2332, 2348, 2520, 2792, 2832, 2862
Bst6I CTCTTC 5 cut(s) 603, 2545, 2643, 3059, 3164
BstACI GRCGYC 2 cut(s) 117, 1384
BstAFI CTTAAG 1 cut(s) 2237
BstBAI YACGTR 1 cut(s) 3046
BstC8I GCNNGC 6 cut(s) 28, 220, 380, 405, 1958, 2472
BstDSI CCRYGG 1 cut(s) 549
BstFNI CGCG 1 cut(s) 1718
BstH2I RGCGCY 2 cut(s) 27, 595
BstHHI GCGC 8 cut(s) 26, 68, 143, 594, 2034, 2542, 2577, 2814
BstMAI GTCTC 3 cut(s) 626, 2147, 3061
BstNI CCWGG 3 cut(s) 1148, 1839, 2510
BstNSI RCATGY 2 cut(s) 1873, 2029
BstPAI GACNNNNGTC 2 cut(s) 1383, 3073
BstSCI CCNGG 4 cut(s) 144, 1146, 1837, 2508
BstSFI CTRYAG 2 cut(s) 365, 2704
BstSLI GKGCMC 2 cut(s) 2112, 2392
BstUI CGCG 1 cut(s) 1718
BstV1I GCAGC 6 cut(s) 30, 33, 898, 1351, 2623, 3125
BstV2I GAAGAC 1 cut(s) 2730
BstX2I RGATCY 1 cut(s) 2708
BstYI RGATCY 1 cut(s) 2708
BstZ17I GTATAC 1 cut(s) 1891
Bsu15I ATCGAT 1 cut(s) 2447
BsuTUI ATCGAT 1 cut(s) 2447
BtgI CCRYGG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 40
BtsIMutI CAGTG 4 cut(s) 233, 2353, 2797, 2867
BveI ACCTGC 2 cut(s) 372, 1562
Cac8I GCNNGC 6 cut(s) 28, 220, 380, 405, 1958, 2472
CaiI CAGNNNCTG 1 cut(s) 1966
CfoI GCGC 8 cut(s) 26, 68, 143, 594, 2034, 2542, 2577, 2814
ClaI ATCGAT 1 cut(s) 2447
CseI GACGC 1 cut(s) 503
CsiI ACCWGGT 1 cut(s) 1146
Csp6I GTAC 6 cut(s) 951, 1316, 1504, 1608, 2583, 2828
CviQI GTAC 6 cut(s) 951, 1316, 1504, 1608, 2583, 2828
DraI TTTAAA 1 cut(s) 1194
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 603, 2545, 2643, 3059, 3164
EarI CTCTTC 5 cut(s) 603, 2545, 2643, 3059, 3164
Ecl136II GAGCTC 1 cut(s) 1009
Eco130I CCWWGG 4 cut(s) 223, 549, 2302, 2499
Eco147I AGGCCT 3 cut(s) 222, 1141, 2301
Eco24I GRGCYC 4 cut(s) 1011, 1354, 1929, 2392
Eco47I GGWCC 5 cut(s) 361, 1286, 1641, 2368, 3137
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 5 cut(s) 183, 453, 975, 993, 3099
Eco88I CYCGRG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 1009
EcoO109I RGGNCCY 4 cut(s) 361, 1156, 2388, 3083
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 3 cut(s) 1146, 1837, 2508
EcoT14I CCWWGG 4 cut(s) 223, 549, 2302, 2499
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 4 cut(s) 1011, 1354, 1929, 2392
ErhI CCWWGG 4 cut(s) 223, 549, 2302, 2499
Esp3I CGTCTC 1 cut(s) 2147
FaqI GGGAC 3 cut(s) 40, 1627, 2242
FauI CCCGC 2 cut(s) 92, 2098
FbaI TGATCA 5 cut(s) 562, 730, 814, 1446, 1761
FblI GTMKAC 4 cut(s) 1591, 1774, 1890, 2083
Fnu4HI GCNGC 7 cut(s) 19, 22, 912, 1061, 1365, 2637, 3114
FriOI GRGCYC 4 cut(s) 1011, 1354, 1929, 2392
Fsp4HI GCNGC 7 cut(s) 19, 22, 912, 1061, 1365, 2637, 3114
FspBI CTAG 2 cut(s) 636, 1356
FspI TGCGCA 1 cut(s) 2576
GlaI GCGC 8 cut(s) 25, 67, 142, 593, 2033, 2541, 2576, 2813
GluI GCNGC 7 cut(s) 19, 22, 912, 1061, 1365, 2637, 3114
GsuI CTGGAG 3 cut(s) 2238, 2316, 3138
HaeII RGCGCY 2 cut(s) 27, 595
HapII CCGG 1 cut(s) 146
HgaI GACGC 1 cut(s) 503
HhaI GCGC 8 cut(s) 26, 68, 143, 594, 2034, 2542, 2577, 2814
Hin1I GRCGYC 2 cut(s) 117, 1384
Hin6I GCGC 8 cut(s) 24, 66, 141, 592, 2032, 2540, 2575, 2812
HinP1I GCGC 8 cut(s) 24, 66, 141, 592, 2032, 2540, 2575, 2812
HincII GTYRAC 4 cut(s) 324, 1602, 3051, 3187
HindII GTYRAC 4 cut(s) 324, 1602, 3051, 3187
HindIII AAGCTT 2 cut(s) 401, 2900
HpaI GTTAAC 2 cut(s) 324, 3187
HpaII CCGG 1 cut(s) 146
HphI GGTGA 5 cut(s) 176, 250, 989, 1111, 3028
Hpy99I CGWCG 5 cut(s) 119, 122, 164, 519, 717
HpyCH4III ACNGT 9 cut(s) 164, 237, 1037, 2332, 2348, 2520, 2792, 2832, 2862
HpyCH4IV ACGT 9 cut(s) 39, 117, 247, 295, 712, 1384, 1588, 3045, 3149
HpySE526I ACGT 9 cut(s) 39, 117, 247, 295, 712, 1384, 1588, 3045, 3149
Hsp92I GRCGYC 2 cut(s) 117, 1384
HspAI GCGC 8 cut(s) 24, 66, 141, 592, 2032, 2540, 2575, 2812
KpnI GGTACC 1 cut(s) 1611
Ksp22I TGATCA 5 cut(s) 562, 730, 814, 1446, 1761
KspAI GTTAAC 2 cut(s) 324, 3187
LmnI GCTCC 5 cut(s) 908, 1006, 1357, 2257, 2885
Lsp1109I GCAGC 6 cut(s) 30, 33, 898, 1351, 2623, 3125
LweI GCATC 9 cut(s) 139, 220, 325, 481, 495, 529, 574, 2063, 2485
MabI ACCWGGT 1 cut(s) 1146
MaeI CTAG 2 cut(s) 636, 1356
MaeII ACGT 9 cut(s) 39, 117, 247, 295, 712, 1384, 1588, 3045, 3149
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 1 cut(s) 2708
MhlI GDGCHC 7 cut(s) 1011, 1354, 1555, 1929, 2112, 2288, 2392
MlyI GAGTC 4 cut(s) 962, 2131, 2224, 2252
MmeI TCCRAC 5 cut(s) 219, 514, 695, 2422, 2541
Mph1103I ATGCAT 1 cut(s) 465
MslI CAYNNNNRTG 2 cut(s) 833, 1548
MspA1I CMGCKG 2 cut(s) 1060, 3116
MspCI CTTAAG 1 cut(s) 2237
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 4 cut(s) 146, 1148, 1839, 2510
MunI CAATTG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 3 cut(s) 1148, 1839, 2510
MvnI CGCG 1 cut(s) 1718
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 549
NlaIV GGNNCC 8 cut(s) 794, 1288, 1305, 1353, 1609, 1643, 2390, 2736
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 5 cut(s) 164, 1040, 1099, 1865, 3107
NsbI TGCGCA 1 cut(s) 2576
NsiI ATGCAT 1 cut(s) 465
NspI RCATGY 2 cut(s) 1873, 2029
OliI CACNNNNGTG 1 cut(s) 1548
PceI AGGCCT 3 cut(s) 222, 1141, 2301
PciI ACATGT 2 cut(s) 1869, 2025
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 7 cut(s) 281, 932, 1016, 1540, 2115, 2356, 2998
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 1837
PkrI GCNGC 7 cut(s) 20, 23, 913, 1062, 1366, 2638, 3115
PleI GAGTC 4 cut(s) 962, 2131, 2224, 2252
PpsI GAGTC 4 cut(s) 962, 2131, 2224, 2252
Ppu21I YACGTR 1 cut(s) 3046
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 2 cut(s) 1869, 2025
PshAI GACNNNNGTC 2 cut(s) 1383, 3073
PshBI ATTAAT 1 cut(s) 275
PsiI TTATAA 1 cut(s) 2022
Psp124BI GAGCTC 1 cut(s) 1011
Psp1406I AACGTT 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 3 cut(s) 1146, 1837, 2508
PspGI CCWGG 3 cut(s) 1146, 1837, 2508
PspN4I GGNNCC 8 cut(s) 794, 1288, 1305, 1353, 1609, 1643, 2390, 2736
PspOMI GGGCCC 1 cut(s) 2388
PspPPI RGGWCCY 1 cut(s) 361
PstI CTGCAG 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 1966
PsuI RGATCY 1 cut(s) 2708
PsyI GACNNNGTC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 3116
RsaI GTAC 6 cut(s) 952, 1317, 1505, 1609, 2584, 2829
RsaNI GTAC 6 cut(s) 951, 1316, 1504, 1608, 2583, 2828
RseI CAYNNNNRTG 2 cut(s) 833, 1548
SacI GAGCTC 1 cut(s) 1011
SatI GCNGC 7 cut(s) 19, 22, 912, 1061, 1365, 2637, 3114
SchI GAGTC 4 cut(s) 962, 2131, 2224, 2252
ScrFI CCNGG 4 cut(s) 146, 1148, 1839, 2510
SduI GDGCHC 7 cut(s) 1011, 1354, 1555, 1929, 2112, 2288, 2392
SexAI ACCWGGT 1 cut(s) 1146
SfaNI GCATC 9 cut(s) 139, 220, 325, 481, 495, 529, 574, 2063, 2485
SfcI CTRYAG 2 cut(s) 365, 2704
SinI GGWCC 5 cut(s) 361, 1286, 1641, 2368, 3137
SmiI ATTTAAAT 1 cut(s) 1194
SmiMI CAYNNNNRTG 2 cut(s) 833, 1548
SmlI CTYRAG 4 cut(s) 598, 1848, 2237, 2281
SmoI CTYRAG 4 cut(s) 598, 1848, 2237, 2281
SseBI AGGCCT 3 cut(s) 222, 1141, 2301
SsiI CCGC 7 cut(s) 85, 508, 1060, 1718, 2105, 2629, 2825
SspMI CTAG 2 cut(s) 636, 1356
SstI GAGCTC 1 cut(s) 1011
StuI AGGCCT 3 cut(s) 222, 1141, 2301
StyD4I CCNGG 4 cut(s) 144, 1146, 1837, 2508
StyI CCWWGG 4 cut(s) 223, 549, 2302, 2499
SwaI ATTTAAAT 1 cut(s) 1194
TaaI ACNGT 9 cut(s) 164, 237, 1037, 2332, 2348, 2520, 2792, 2832, 2862
TaiI ACGT 9 cut(s) 42, 120, 250, 298, 715, 1387, 1591, 3048, 3152
TauI GCSGC 1 cut(s) 1063
TfiI GAWTC 7 cut(s) 281, 932, 1016, 1540, 2115, 2356, 2998
TscAI CASTG 4 cut(s) 240, 2353, 2797, 2867
TseFI GTSAC 5 cut(s) 164, 1040, 1099, 1865, 3107
TseI GCWGC 6 cut(s) 18, 21, 911, 1364, 2636, 3113
Tsp45I GTSAC 5 cut(s) 164, 1040, 1099, 1865, 3107
TspGWI ACGGA 3 cut(s) 446, 1395, 1922
TspRI CASTG 4 cut(s) 240, 2353, 2797, 2867
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 527
Vha464I CTTAAG 1 cut(s) 2237
VpaK11BI GGWCC 5 cut(s) 361, 1286, 1641, 2368, 3137
VspI ATTAAT 1 cut(s) 275
XapI RAATTY 9 cut(s) 253, 439, 647, 693, 1337, 1433, 1687, 2160, 2243
XceI RCATGY 2 cut(s) 1873, 2029
XmiI GTMKAC 4 cut(s) 1591, 1774, 1890, 2083
XspI CTAG 2 cut(s) 636, 1356
ZraI GACGTC 2 cut(s) 118, 1385
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.