Rroxscaffold_5G00360900
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011969
Physical Location & Seq
Reverse (-)
41552000 .. 41559121
7122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360900.1

Sequence Viewer

Length: 2844 bp
ATGAGCTGCTCTTCTCCGGACAAAACATTGTTTGACTGGGGAAGGATGCGATTGCCCCGTCCACTCTATGGTGTTGGAGATGCATTTGCCGTGGAGGCTGACGATCAGTTCAGGAAAAAACGAGATGCTGAGAGGCTCTCAAGGTTACAAGAGGAGGAGAAGAATAATATTGAGACTAGAAAACGAAAATTTTTTGCAGAAGTGCTTAATGGTGTTCGTGAATATCAATTGCAAATTCAGGCTTCTATGGCTCGTCGAAAACGAAGGAATGATTTTGTCCAGGGGTGGCATGCAAAGCAAAAACAACGTGCTACTCGAGCTGAGAAATTGAGGTTCCAAGCATTGAAGTCTGATGACCAGGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAGAGGCTGACCTTGCTTCTTGAAGAAACGAATAAACTCCTTGTCAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATTCTAAACATACAGAGGACACTGAATCTTTAAAAGACTCAGAAGGTGATTTGACTGAGTTGGAAGAGGATGTGGAGATCATTGATTCTGATCGCAATGATGATGGTAGTGACTTGCTTAAAGGTCAGCGGCAATATAACTCTGCCATCCATTCTATCCAGGAACAGGTAACCGAGCAACCTTCAATGCTTGAAGGTGGAGAGTTAAGGCCCTACCAATTGGAGGGTCTACAATGGATGCTCTCCTTGTTCAATAACAATCTAAACGGTATATTGGCTGACGAGATGGGATTGGGTAAAACTATACAAACCATTTCATTGATTGCATATCTCATTGAAAACAAGGGTGTCACTGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTATTACCAAATTGGGTTACTGAATTTGCAACATGGGCTCCTAGTATTAAGGCCATTCTTTATGACGGGCGCCAAGAGGAAAGAAAGGCAATGAAGGAAGAATTATCAGGGGAAGGAAAATTTAATGTATTGATCACACATTATGACCTTATCATGAGGGATAAACAATTTTTGAAGAAGATTAGCTGGGCTTACCTGATCGTTGACGAAGGGCATCGGTTGAAGAATTCTGAGTGTGCTCTCGCTATCACACTTGCAGGCTATGACATGCGACGTAGACTTTTGTTGACTGGCACGCCAATACAGAATAGCTTGCAGGAGTTGTGGTCCCTACTCAATTTTCTTCTCCCACACATTTTCAATTCAGTTCAGAATTTTGAGGAATGGTTTAATGCACCTTTTGCGGATCGGGGTGATATGTCTCTTACGGAGGAAGAACAGCTACTGATCATTCGACGTCTACATCAAGTTATAAGGCCATTCATATTGAGGAGGAAAAAAGATGAAGTTGAGAAATTCCTTCCTGGAAAATCCCAAGTCATACTGAAATGCGACATGTCATCATGGCAGAAAGTATATTATCGACAAGTTACAGATGTGGGCAGGGTCGGGCTAGATAATGGTTCGGGGAAATCAAAGAGCTTGCAGAACCTAACCATGCAGCTCAGAAAGTGTTGTAACCACCCGTACCTTTTTGTTGTGGGAGATTATAACATCTGGCGTCAGGAGGAGATCGTAAGAGCATCAGGAAAATTTGAACTGCTCGATCGTCTACTCCCAAAACTCCAAAAAGCGGGGCATAGAGTCTTGCTTTTCTCACAAATGACTCGCCTCATGGATATTCTTGAAGTTTATCTGCAGCTTCACCATTTCCAGTATCTTCGATTGGATGGTTCAACAAAAACTGAGGAAAGAGGGACTCTGCTAAAGAGATTCAATGCTCCAGACTCTCCTTACTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAATCCGCAGATACAGTTATAATTTTTGATAGTGATTGGAATCCTCAGATGGATCAACAGGCAGAGGATCGAGCCCATCGTATAGGTCAAAAGAAAGAAGTCAGGGTATTTGTGTTGGTTAGTGTTGGATCCATTGAAGAAGTAATTTTGGAGCGTGCTAAACAGAAGATGGGAATAGATGCCAAGGTCATCCAGGCCGGACTGTTCAATACAACTTCCACAGGTTCGTACTTGGATTCCATGCAAAATATCTGTTACGATGCCATTCCTTCAAGTAGGAAAGAATTGGATGTTTATTTACTGCTTCAGGGCAACAGCATTGACTCGTTGATTTTAAAACTGGGAGCCTTAGTTTGTCTGCACATGGTTTCCTCTCAGGACAGAAGAGATATGTTGGAGGAAATCATGCGCAAGGGTACAAGTTCACTTGGCACAGACGTGCCAAGCGAGAGAGAAATCAACCGCCTTGCTGCCAGATCAGATGACGAGTTCCGGATGTTTGAGAAAATGGATGCTGAGAGAAGGCAAAAGGAGAATTATAGATCTCGCCTAATGGAAGAGCATGAGGTTCCTGAGTGGGCATATTCAGCACCTGATAAGGTTACAGCTTCCAAAGGATTTGATTATAGCAATGTCTCAGGAAAGCGGCCAAGAAAGGAGGTACGTTCTTATGCTGATGGCCTTAGTGATCTACAGTTTATGAAAGCTGTAGAAAGTGGAGAAGATGTATCGATGTTTTCCGGTAAAGGAAAGAGGAAAAATCTTTTTCCATCTAAGAGCAGTGTTGTACCTTTGAATGAAAATGTGCCGGTGGTCAGTGGAAGTGAAGAGACATATGGTTTGACCCCACCTTCAAAGAGACACAAGTCTGAAGGACCAAATATAGTGAAACACGAAAGTCATGCAGGAGTTTTCAAAATTACTAGAAAGAAGAGATCAAATTCATCCTCCGACAGTAAAGGCCGAAATTCCAACGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

947

Amino Acids

108.6

Weight (kDa)

8.71

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 225 - 386 2.4e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 229 - 516 5.6e-93 SNF2-related domain
HDA2-3 PF11496 497 - 685 1.4e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 536 - 649 9.6e-26 Helicase conserved C-terminal domain
SnAC PF14619 790 - 854 9.3e-09 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1328, 1566, 1880
AatII GACGTC 1 cut(s) 1315
Acc16I TGCGCA 1 cut(s) 2270
AccB1I GGYRCC 1 cut(s) 924
AccB7I CCANNNNNTGG 1 cut(s) 68
AccI GTMKAC 4 cut(s) 700, 1132, 1315, 1627
AccIII TCCGGA 2 cut(s) 16, 2352
AciI CCGC 6 cut(s) 601, 1259, 1649, 1866, 2323, 2506
AclWI GGATC 5 cut(s) 1269, 1920, 1935, 1983, 1996
AcoI YGGCCR 1 cut(s) 2507
AcuI CTGAAG 2 cut(s) 2150, 2751
AcyI GRCGYC 3 cut(s) 925, 1312, 1576
AfaI GTAC 5 cut(s) 1544, 2090, 2278, 2523, 2649
AfiI CCNNNNNNNGG 4 cut(s) 68, 637, 694, 1648
AflIII ACRYGT 1 cut(s) 1410
AjiI CACGTC 1 cut(s) 2299
AjnI CCWGG 5 cut(s) 279, 357, 630, 1378, 2052
AleI CACNNNNGTG 1 cut(s) 2297
AloI GAACNNNNNNTCC 4 cut(s) 441, 473, 1847, 1879
Alw21I GWGCWC 2 cut(s) 1096, 1832
Alw26I GTCTC 5 cut(s) 167, 1281, 2500, 2684, 2713
AlwI GGATC 5 cut(s) 1269, 1920, 1935, 1983, 1996
AlwNI CAGNNNCTG 2 cut(s) 1300, 2453
Ama87I CYCGRG 1 cut(s) 315
Aor13HI TCCGGA 2 cut(s) 16, 2352
AoxI GGCC 8 cut(s) 680, 827, 906, 1331, 2055, 2507, 2539, 2821
ApaI GGGCCC 1 cut(s) 831
ApeKI GCWGC 5 cut(s) 6, 452, 1516, 1714, 2330
ArsI GACNNNNNNTTYG 2 cut(s) 2683, 2715
AspLEI GCGC 2 cut(s) 927, 2271
AspS9I GGNCC 5 cut(s) 681, 827, 828, 1182, 2735
AsuHPI GGTGA 3 cut(s) 530, 1280, 1712
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 2 cut(s) 1182, 2735
BaeGI GKGCMC 1 cut(s) 831
BamHI GGATCC 1 cut(s) 1988
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 3 cut(s) 831, 895, 1936
BarI GAAGNNNNNNTAC 2 cut(s) 1281, 1313
BauI CACGAG 1 cut(s) 1833
Bbv12I GWGCWC 2 cut(s) 1096, 1832
BbvI GCAGC 4 cut(s) 439, 1528, 1726, 2317
BccI CCATC 9 cut(s) 569, 626, 751, 1739, 1903, 1944, 2023, 2531, 2638
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 2744, 2778
BciT130I CCWGG 5 cut(s) 281, 359, 632, 1380, 2054
BclI TGATCA 2 cut(s) 987, 1302
BcoDI GTCTC 5 cut(s) 167, 1281, 2500, 2684, 2713
BfaI CTAG 4 cut(s) 177, 897, 1469, 2784
BfmI CTRYAG 3 cut(s) 1712, 2552, 2568
BfoI RGCGCY 1 cut(s) 928
BglI GCCNNNNNGGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 2402
BisI GCNGC 7 cut(s) 7, 453, 602, 1517, 1715, 2331, 2507
BlsI GCNGC 7 cut(s) 8, 454, 603, 1518, 1716, 2332, 2508
Bme1390I CCNGG 5 cut(s) 281, 359, 632, 1380, 2054
Bme18I GGWCC 2 cut(s) 1182, 2735
BmeT110I CYCGRG 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 2299
BmgT120I GGNCC 5 cut(s) 681, 827, 828, 1182, 2735
BmrFI CCNGG 5 cut(s) 281, 359, 632, 1380, 2054
BmrI ACTGGG 3 cut(s) 46, 834, 2210
BmsI GCATC 9 cut(s) 36, 70, 115, 699, 1078, 1607, 2029, 2110, 2362
BmuI ACTGGG 3 cut(s) 46, 834, 2210
BoxI GACNNNNGTC 1 cut(s) 2725
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 1782, 1860
BpuEI CTTGAG 2 cut(s) 124, 1846
Bsa29I ATCGAT 1 cut(s) 2591
BsaBI GATNNNNATC 2 cut(s) 561, 1899
BsaHI GRCGYC 3 cut(s) 925, 1312, 1576
BsaJI CCNNGG 3 cut(s) 90, 280, 2043
BsaWI WCCGGW 3 cut(s) 16, 2352, 2600
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 637, 694, 1648
Bse118I RCCGGY 1 cut(s) 2668
Bse1I ACTGG 5 cut(s) 41, 829, 1150, 1729, 2205
Bse3DI GCAATG 3 cut(s) 574, 951, 2497
Bse8I GATNNNNATC 2 cut(s) 561, 1899
BseAI TCCGGA 2 cut(s) 16, 2352
BseBI CCWGG 5 cut(s) 281, 359, 632, 1380, 2054
BseCI ATCGAT 1 cut(s) 2591
BseDI CCNNGG 3 cut(s) 90, 280, 2043
BseJI GATNNNNATC 2 cut(s) 561, 1899
BseLI CCNNNNNNNGG 4 cut(s) 68, 637, 694, 1648
BseMI GCAATG 3 cut(s) 574, 951, 2497
BseNI ACTGG 5 cut(s) 41, 829, 1150, 1729, 2205
BseRI GAGGAG 4 cut(s) 167, 170, 1360, 1598
BseSI GKGCMC 1 cut(s) 831
BseXI GCAGC 4 cut(s) 439, 1528, 1726, 2317
BseYI CCCAGC 1 cut(s) 1041
BsgI GTGCAG 1 cut(s) 2204
Bsh1285I CGRYCG 1 cut(s) 1624
BshFI GGCC 8 cut(s) 682, 829, 908, 1333, 2057, 2509, 2541, 2823
BshNI GGYRCC 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 2591
BsiEI CGRYCG 1 cut(s) 1624
BsiHKAI GWGCWC 2 cut(s) 1096, 1832
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 5 cut(s) 17, 2058, 2353, 2601, 2669
BslFI GGGAC 2 cut(s) 1168, 1786
BslI CCNNNNNNNGG 4 cut(s) 68, 637, 694, 1648
BsmAI GTCTC 5 cut(s) 167, 1281, 2500, 2684, 2713
BsmFI GGGAC 2 cut(s) 1168, 1786
BsnI GGCC 8 cut(s) 682, 829, 908, 1333, 2057, 2509, 2541, 2823
BsoBI CYCGRG 1 cut(s) 315
Bsp120I GGGCCC 1 cut(s) 827
Bsp1286I GDGCHC 5 cut(s) 831, 895, 1096, 1832, 1936
Bsp13I TCCGGA 2 cut(s) 16, 2352
BspACI CCGC 6 cut(s) 601, 1259, 1649, 1866, 2323, 2506
BspANI GGCC 8 cut(s) 682, 829, 908, 1333, 2057, 2509, 2541, 2823
BspDI ATCGAT 1 cut(s) 2591
BspEI TCCGGA 2 cut(s) 16, 2352
BspHI TCATGA 1 cut(s) 1008
BspMAI CTGCAG 1 cut(s) 1716
BspPI GGATC 5 cut(s) 1269, 1920, 1935, 1983, 1996
BspQI GCTCTTC 2 cut(s) 16, 2412
BspT107I GGYRCC 1 cut(s) 924
BsrDI GCAATG 3 cut(s) 574, 951, 2497
BsrFI RCCGGY 1 cut(s) 2668
BsrI ACTGG 5 cut(s) 41, 829, 1150, 1729, 2205
BssAI RCCGGY 1 cut(s) 2668
BssECI CCNNGG 3 cut(s) 90, 280, 2043
BssNI GRCGYC 3 cut(s) 925, 1312, 1576
BssSI CACGAG 1 cut(s) 1833
BssT1I CCWWGG 1 cut(s) 2043
Bst2BI CACGAG 1 cut(s) 1833
Bst2UI CCWGG 5 cut(s) 281, 359, 632, 1380, 2054
Bst4CI ACNGT 5 cut(s) 740, 1876, 2064, 2556, 2816
Bst6I CTCTTC 6 cut(s) 16, 531, 2239, 2412, 2682, 2786
BstACI GRCGYC 3 cut(s) 925, 1312, 1576
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstC8I GCNNGC 6 cut(s) 291, 1114, 1151, 1169, 1499, 2016
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 640
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 2 cut(s) 927, 2271
BstMAI GTCTC 5 cut(s) 167, 1281, 2500, 2684, 2713
BstMCI CGRYCG 1 cut(s) 1624
BstMWI GCNNNNNNNGC 9 cut(s) 95, 248, 295, 317, 409, 851, 890, 1256, 2447
BstNI CCWGG 5 cut(s) 281, 359, 632, 1380, 2054
BstNSI RCATGY 3 cut(s) 293, 1126, 1414
BstPAI GACNNNNGTC 1 cut(s) 2725
BstPI GGTNACC 1 cut(s) 640
BstSCI CCNGG 5 cut(s) 279, 357, 630, 1378, 2052
BstSFI CTRYAG 3 cut(s) 1712, 2552, 2568
BstSLI GKGCMC 1 cut(s) 831
BstV1I GCAGC 4 cut(s) 439, 1528, 1726, 2317
BstX2I RGATCY 2 cut(s) 1988, 2402
BstYI RGATCY 2 cut(s) 1988, 2402
Bsu15I ATCGAT 1 cut(s) 2591
BsuRI GGCC 8 cut(s) 682, 829, 908, 1333, 2057, 2509, 2541, 2823
BsuTUI ATCGAT 1 cut(s) 2591
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 2299
BtsI GCAGTG 1 cut(s) 2647
BtsIMutI CAGTG 4 cut(s) 492, 822, 2647, 2683
Cac8I GCNNGC 6 cut(s) 291, 1114, 1151, 1169, 1499, 2016
CaiI CAGNNNCTG 2 cut(s) 1300, 2453
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 2 cut(s) 927, 2271
Cfr10I RCCGGY 1 cut(s) 2668
Cfr13I GGNCC 5 cut(s) 681, 827, 828, 1182, 2735
ClaI ATCGAT 1 cut(s) 2591
CseI GACGC 1 cut(s) 1565
Csp6I GTAC 5 cut(s) 1543, 2089, 2277, 2522, 2648
CviQI GTAC 5 cut(s) 1543, 2089, 2277, 2522, 2648
DinI GGCGCC 1 cut(s) 926
DraI TTTAAA 2 cut(s) 504, 2196
EaeI YGGCCR 1 cut(s) 2507
Eam1104I CTCTTC 6 cut(s) 16, 531, 2239, 2412, 2682, 2786
EarI CTCTTC 6 cut(s) 16, 531, 2239, 2412, 2682, 2786
Eco130I CCWWGG 1 cut(s) 2043
Eco24I GRGCYC 3 cut(s) 831, 895, 1936
Eco47I GGWCC 2 cut(s) 1182, 2735
Eco57I CTGAAG 2 cut(s) 2150, 2751
Eco88I CYCGRG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 640
EcoO109I RGGNCCY 2 cut(s) 681, 828
EcoO65I GGTNACC 1 cut(s) 640
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 5 cut(s) 279, 357, 630, 1378, 2052
EcoT14I CCWWGG 1 cut(s) 2043
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 3 cut(s) 831, 895, 1936
EgeI GGCGCC 1 cut(s) 926
EheI GGCGCC 1 cut(s) 926
ErhI CCWWGG 1 cut(s) 2043
FaqI GGGAC 2 cut(s) 1168, 1786
FauI CCCGC 1 cut(s) 1642
FauNDI CATATG 1 cut(s) 2695
FbaI TGATCA 2 cut(s) 987, 1302
FblI GTMKAC 4 cut(s) 700, 1132, 1315, 1627
Fnu4HI GCNGC 7 cut(s) 7, 453, 602, 1517, 1715, 2331, 2507
FriOI GRGCYC 3 cut(s) 831, 895, 1936
Fsp4HI GCNGC 7 cut(s) 7, 453, 602, 1517, 1715, 2331, 2507
FspBI CTAG 4 cut(s) 177, 897, 1469, 2784
FspI TGCGCA 1 cut(s) 2270
GlaI GCGC 2 cut(s) 926, 2270
GluI GCNGC 7 cut(s) 7, 453, 602, 1517, 1715, 2331, 2507
GsaI CCCAGC 1 cut(s) 1045
GsuI CTGGAG 2 cut(s) 1782, 1860
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 8 cut(s) 682, 829, 908, 1333, 2057, 2509, 2541, 2823
HapII CCGG 5 cut(s) 17, 2058, 2353, 2601, 2669
HgaI GACGC 1 cut(s) 1565
HhaI GCGC 2 cut(s) 927, 2271
Hin1I GRCGYC 3 cut(s) 925, 1312, 1576
Hin6I GCGC 2 cut(s) 925, 2269
HinP1I GCGC 2 cut(s) 925, 2269
HincII GTYRAC 2 cut(s) 1060, 1143
HindII GTYRAC 2 cut(s) 1060, 1143
HpaII CCGG 5 cut(s) 17, 2058, 2353, 2601, 2669
HphI GGTGA 3 cut(s) 530, 1280, 1712
Hpy166II GTNNAC 8 cut(s) 62, 701, 1060, 1133, 1143, 1316, 1628, 2285
Hpy8I GTNNAC 8 cut(s) 62, 701, 1060, 1133, 1143, 1316, 1628, 2285
Hpy99I CGWCG 3 cut(s) 258, 1131, 1314
HpyCH4III ACNGT 5 cut(s) 740, 1876, 2064, 2556, 2816
HpyCH4IV ACGT 6 cut(s) 307, 463, 1129, 1312, 2298, 2524
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 248, 295, 317, 409, 851, 890, 1256, 2447
HpySE526I ACGT 6 cut(s) 307, 463, 1129, 1312, 2298, 2524
Hsp92I GRCGYC 3 cut(s) 925, 1312, 1576
HspAI GCGC 2 cut(s) 925, 2269
KasI GGCGCC 1 cut(s) 924
Kpn2I TCCGGA 2 cut(s) 16, 2352
Ksp22I TGATCA 2 cut(s) 987, 1302
LguI GCTCTTC 2 cut(s) 16, 2412
LmnI GCTCC 6 cut(s) 449, 850, 898, 1801, 2011, 2204
Lsp1109I GCAGC 4 cut(s) 439, 1528, 1726, 2317
LweI GCATC 9 cut(s) 36, 70, 115, 699, 1078, 1607, 2029, 2110, 2362
MaeI CTAG 4 cut(s) 177, 897, 1469, 2784
MaeII ACGT 6 cut(s) 307, 463, 1129, 1312, 2298, 2524
MaeIII GTNAC 9 cut(s) 144, 581, 640, 820, 871, 1444, 1532, 2114, 2461
MfeI CAATTG 2 cut(s) 227, 689
MflI RGATCY 2 cut(s) 1988, 2402
MhlI GDGCHC 5 cut(s) 831, 895, 1096, 1832, 1936
Mly113I GGCGCC 1 cut(s) 925
MlyI GAGTC 6 cut(s) 503, 1668, 1675, 1768, 1796, 2177
MmeI TCCRAC 5 cut(s) 55, 513, 1966, 2235, 2835
Mph1103I ATGCAT 1 cut(s) 85
MroI TCCGGA 2 cut(s) 16, 2352
MseI TTAA 8 cut(s) 207, 503, 591, 677, 903, 978, 1245, 2195
MslI CAYNNNNRTG 2 cut(s) 374, 2297
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 5 cut(s) 17, 2058, 2353, 2601, 2669
MspR9I CCNGG 5 cut(s) 281, 359, 632, 1380, 2054
MunI CAATTG 2 cut(s) 227, 689
MvaI CCWGG 5 cut(s) 281, 359, 632, 1380, 2054
MwoI GCNNNNNNNGC 9 cut(s) 95, 248, 295, 317, 409, 851, 890, 1256, 2447
NarI GGCGCC 1 cut(s) 925
NdeI CATATG 1 cut(s) 2695
NmuCI GTSAC 2 cut(s) 581, 820
NsbI TGCGCA 1 cut(s) 2270
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 3 cut(s) 293, 1126, 1414
OliI CACNNNNGTG 1 cut(s) 2297
PaeI GCATGC 1 cut(s) 293
PaeR7I CTCGAG 1 cut(s) 315
PagI TCATGA 1 cut(s) 1008
PciI ACATGT 1 cut(s) 1410
PciSI GCTCTTC 2 cut(s) 16, 2412
PcsI WCGNNNNNNNCGW 4 cut(s) 259, 313, 1936, 2304
PfeI GAWTC 6 cut(s) 473, 497, 557, 1788, 1900, 2096
PflMI CCANNNNNTGG 1 cut(s) 68
PfoI TCCNGGA 2 cut(s) 630, 1378
PkrI GCNGC 7 cut(s) 8, 454, 603, 1518, 1716, 2332, 2508
Ple19I CGATCG 1 cut(s) 1624
PleI GAGTC 6 cut(s) 503, 1667, 1675, 1768, 1796, 2177
PluTI GGCGCC 1 cut(s) 928
PpsI GAGTC 6 cut(s) 503, 1667, 1675, 1768, 1796, 2177
PscI ACATGT 1 cut(s) 1410
PshAI GACNNNNGTC 1 cut(s) 2725
PsiI TTATAA 3 cut(s) 1328, 1566, 1880
Psp6I CCWGG 5 cut(s) 279, 357, 630, 1378, 2052
PspEI GGTNACC 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 1041
PspGI CCWGG 5 cut(s) 279, 357, 630, 1378, 2052
PspOMI GGGCCC 1 cut(s) 827
PspPI GGNCC 5 cut(s) 681, 827, 828, 1182, 2735
PspXI VCTCGAGB 1 cut(s) 315
PstI CTGCAG 1 cut(s) 1716
PstNI CAGNNNCTG 2 cut(s) 1300, 2453
PsuI RGATCY 2 cut(s) 1988, 2402
PvuI CGATCG 1 cut(s) 1624
RsaI GTAC 5 cut(s) 1544, 2090, 2278, 2523, 2649
RsaNI GTAC 5 cut(s) 1543, 2089, 2277, 2522, 2648
RseI CAYNNNNRTG 2 cut(s) 374, 2297
SapI GCTCTTC 2 cut(s) 16, 2412
SaqAI TTAA 8 cut(s) 207, 503, 591, 677, 903, 978, 1245, 2195
SatI GCNGC 7 cut(s) 7, 453, 602, 1517, 1715, 2331, 2507
Sau96I GGNCC 5 cut(s) 681, 827, 828, 1182, 2735
SchI GAGTC 6 cut(s) 503, 1668, 1675, 1768, 1796, 2177
ScrFI CCNGG 5 cut(s) 281, 359, 632, 1380, 2054
SduI GDGCHC 5 cut(s) 831, 895, 1096, 1832, 1936
SfaNI GCATC 9 cut(s) 36, 70, 115, 699, 1078, 1607, 2029, 2110, 2362
SfcI CTRYAG 3 cut(s) 1712, 2552, 2568
SfoI GGCGCC 1 cut(s) 926
Sfr274I CTCGAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 1182, 2735
SlaI CTCGAG 1 cut(s) 315
SmiMI CAYNNNNRTG 2 cut(s) 374, 2297
SmlI CTYRAG 3 cut(s) 139, 315, 1825
SmoI CTYRAG 3 cut(s) 139, 315, 1825
SphI GCATGC 1 cut(s) 293
SsiI CCGC 6 cut(s) 601, 1259, 1649, 1866, 2323, 2506
SspDI GGCGCC 1 cut(s) 924
SspI AATATT 1 cut(s) 169
SspMI CTAG 4 cut(s) 177, 897, 1469, 2784
StyD4I CCNGG 5 cut(s) 279, 357, 630, 1378, 2052
StyI CCWWGG 1 cut(s) 2043
TaaI ACNGT 5 cut(s) 740, 1876, 2064, 2556, 2816
TaiI ACGT 6 cut(s) 310, 466, 1132, 1315, 2301, 2527
TaqI TCGA 8 cut(s) 256, 316, 1309, 1438, 1620, 1738, 1930, 2591
TauI GCSGC 2 cut(s) 604, 2509
TfiI GAWTC 6 cut(s) 473, 497, 557, 1788, 1900, 2096
Tru1I TTAA 8 cut(s) 207, 503, 591, 677, 903, 978, 1245, 2195
Tru9I TTAA 8 cut(s) 207, 503, 591, 677, 903, 978, 1245, 2195
TscAI CASTG 4 cut(s) 499, 829, 2647, 2683
TseFI GTSAC 2 cut(s) 581, 820
TseI GCWGC 5 cut(s) 6, 452, 1516, 1714, 2330
Tsp45I GTSAC 2 cut(s) 581, 820
TspDTI ATGAA 8 cut(s) 777, 962, 1327, 1374, 1804, 2576, 2673, 2793
TspGWI ACGGA 1 cut(s) 1298
TspRI CASTG 4 cut(s) 499, 829, 2647, 2683
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 2 cut(s) 1182, 2735
XceI RCATGY 3 cut(s) 293, 1126, 1414
XhoI CTCGAG 1 cut(s) 315
XmiI GTMKAC 4 cut(s) 700, 1132, 1315, 1627
XspI CTAG 4 cut(s) 177, 897, 1469, 2784
ZraI GACGTC 1 cut(s) 1313
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.