Rh4DG206400
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011969
Physical Location & Seq
Reverse (-)
40005428 .. 40013090
7663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG206400.1

Sequence Viewer

Length: 3138 bp
ATGGCTCAGCTGGACAGCCTCGACCTCATTAGCAAGACCAAGTCCCTGATCTCTGCCCTCGACCTCGTCTCCCGCGACCTCCCTCTCCCTCCTCACCTCTTCGACCTCGTTTCCTCCATCTACCACGCCCCCCAGGCCCCCAATCCCGACCCTGCCGGCGGTTTGGGTGAAGGTGAGAGCTGTGGAGGGGATGATTTGTTGGGAGACCTTGAAGATGCGCTTTTGAACCAACGTCACAAGTGCAGTTCGGGTGTTGGACTAATTGAATCCGGGGAGAAGCGTTTCCAAAGCCACCTTCGGCGTAGATTGGCTCAGCTTGAAGAACTACCTTCAAGTAGAGGAGAGGAGTTGCAGACCAAGTGCTTGCTTGAGTTCTATGGGCTAAAGCTTGCAGAATTGCAAAACAAGGTGCGTTCTGATGTGAGTTCAGAATACTTGCTCCGCATGAGCTGCTCTTCTCCGGACAAAACATTGTTTGATTGGGGAAGGATGCGATTGCCCCGTCCACTCTATGGTGTTGGAGATGCATTTGCTGTGGAGGCTGACGATCAGTTCAGGAAAAAACGAGATGCTGAGAGGCTCTCAAGGTTACAAGAGGAGGAGAAGAATAATATTGAGACTAGAAAACGAAAATTTTTCGCAGAAGTGCTTAATGGTGTTCGTGAATATCAATTGCAAATTCAGGCTTCTATGGCTCGTCGAAAACGAAGGAATGATTTTGTCCAGGGGTGGCATGCAAAGCAAAAACAACGTGCTACTCGAGCTGAGAAATTGAGATTCCAAGCATTGAAGTCTGATGACCAGGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAGAGACTGACATTGCTTCTTGAAGAAACGAATAAACTCCTTGTCAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATTCTAAACATACAGAGGACATTGAATCTTTAAAAGACTCAGAAGGTGATTTGACTGAGTTGGAAGAGGATGTGGAGATCATTGATTCTGATCGCAATGATGATGGTAGTGACTTGCTTAAAGGTCAGCGGCAATATAACTCTGCCATCCATTCTATCCAGGAACAGGTAACCGAGCAACCTTCAATGCTTGAAGGTGGAGAGTTAAGGCCCTACCAATTGGAGGGTCTACAATGGATGCTCTCCTTGTTCAATAACAATCTAAACGGTATATTGGCTGACGAGATGGGATTGGGTAAAACTATACAAACCATTTCATTGATTGCATATCTCATTGAAAACAAGGGTGTCACTGGGCCCCACTTGATAGTGGCTCCAAAGGCTGTATTACCAAATTGGGTTACTGAATTCGCAACATGGGCTCCTAGTATTAAGGCCATTCTTTATGACGGGCGCCAAGAGGAAAGAAAGGCAATGAAGGAAGAATTATCAGGGGAAGGAAAATTTAATGTATTGATCACACATTATGACCTTATCATGAGGGATAAACAATTTTTGAAGAAGATTAGCTGGGCTTACCTGATCGTTGACGAAGGGCATCGGTTGAAGAATTCTGAGTGTGCTCTCGCTATCACACTTGCAGGCTATGACATGCGACGTAGACTTCTGTTGACTGGCACGCCAATACAGAATAGCTTGCAGGAGTTGTGGTCCCTACTCAATTTTCTTCTCCCACACATTTTCAATTCAGTTCAGAATTTTGAGGAATGGTTTAATGCACCTTTTGCCGATCGGGGTGATATGTCTCTTACGGAGGAAGAACAGCTATTGATCATTCGACGTCTACATCAAGTTATAAGGCCATTCATATTGAGGAGGAAAAAAGATGAAGTTGAGAAATTCCTTCCTGGAAAATCCCAAGTCATACTGAAATGCGACATGTCATCATGGCAGAAAGTATATTATCGACAAGTTACAGATGTGGGCAGGGTCGGGCTAGATAATGGTTCGGGGAAATCAAAGAGCTTGCAGAACCTAACCATGCAGCTCAGAAAGTGTTGTAACCACCCGTACCTTTTTGTTGTGGGAGATTATAACATCTGGCGTCAGGAGGAGATCGTAAGAGCATCAGGAAAATTTGAACTGCTCGATCGTCTACTCCCAAAACTCCAAAAAGCGGGGCATAGAGTCTTGCTTTTCTCACAAATGACTCGCCTCATGGATATTCTTGAAGTTTATCTGCAGCTTCACCATTTCCAGTATCTTCGATTGGATGGTTCAACAAAAACTGAGGAAAGAGGGACTCTGCTAAAGAGATTCAATGCTCCAGACTCTCCTTACTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAATCTGCAGATACAGTTATAATTTTTGATAGTGATTGGAATCCTCAGATGGATCAACAGGCAGAGGATCGAGCCCATCGTATTGGTCAAAAGAAAGAAGTCAGGGTATTTGTGTTGGTTAGTGTTGGATCCATTGAAGAAGTAATTTTGGAGCGTGCTAAACAGAAGATGGGAATAGATGCCAAGGTCATCCAGGCCGGACTGTTCAATACAACTTCCACAGCTCAGGACAGAAGAGATATGTTGGAGGAAATCATGCGCAAGGGTACAAGTTCACTTGGCACAGACGTGCCAAGCGAGAGAGAAATCAACCGCCTTGCTGCCAGATCAGATGATGAGTTCCGGATGTTTGAGAAAATGGATGCTGAGAGAAGGCAAAAGGAGAATTATAGATCTCGCCTAATGGAAGAGCATGAGGTTCCTGAGTGGGCATATTCAGCACCTGATAAGGTTACAGCTTCCAAAGGATTTGATTATAGCAATGTCTCGGGAAAGCGGCCAAGAAAGGAGGTACGTTCTTATGCTGATGGCCTTAGTGATCTACAGTTTATGAAAGCTGTAGAAAGTGGAGAAGATGTATCGATGTTTTCCGGTAAAGGAAAGAGGAAAAATCTTTTTCCATCTAAGAGCAGTGTTGTACCTTTGAATGAAAATGTGCCGGTGGTCAGTGGATGTGAAGAGACATATGGTTTGACCCCACCTTCAAAGAGACACAAGTCTGAAGGACCAAATATAGTGAAACACGAAAGTCATGCAGGAGTTTTCAAAATTACTAGAAAGAAGAGATCAAATTCATCCTCCGACAGTAAAGGCCGAAATTCCAACGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

1045

Amino Acids

119.35

Weight (kDa)

8.1

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 373 - 534 2.8e-11 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 377 - 664 6.8e-93 SNF2-related domain
HDA2-3 PF11496 645 - 823 2.3e-10 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 684 - 797 1.1e-25 Helicase conserved C-terminal domain
SnAC PF14619 888 - 952 1.1e-08 Snf2-ATP coupling, chromatin remodelling complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06010 AT5G19310 AT5G19310
fragaria_vesca FvH4_4g14970
malus_domestica MD13G1186900.v1.1 MD16G1187800.v1.1
prunus_persica Prupe.1G154600_v2.0.a1 Prupe.1G154600_v2.0.a1
pyrus_communis pycom13g16190
rosa_chinensis RchiOBHm_Chr4g0417121
rosa_laevigata RLG00000007930
rosa_multiflora Rmu_ssc0000010.1_g000026
rosa_roxburghii Rroxscaffold_5G00360900
rosa_rugosa Rorug04G0146000
rosa_samantha Rh4AG208500 Rh4BG205700 Rh4CG219500 Rh4DG206400
rosa_wichuraiana Rw4G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1772, 2010, 2324
AatII GACGTC 1 cut(s) 1759
Acc16I TGCGCA 1 cut(s) 2564
AccB1I GGYRCC 1 cut(s) 1368
AccB7I CCANNNNNTGG 1 cut(s) 512
AccI GTMKAC 4 cut(s) 1144, 1576, 1759, 2071
AccII CGCG 1 cut(s) 75
AccIII TCCGGA 2 cut(s) 460, 2646
AciI CCGC 7 cut(s) 73, 159, 442, 1045, 2093, 2617, 2800
AclWI GGATC 4 cut(s) 2364, 2379, 2427, 2440
AcoI YGGCCR 1 cut(s) 2801
AcuI CTGAAG 1 cut(s) 3045
AcyI GRCGYC 3 cut(s) 1369, 1756, 2020
AfaI GTAC 4 cut(s) 1988, 2572, 2817, 2943
AfiI CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
AflIII ACRYGT 1 cut(s) 1854
AjiI CACGTC 1 cut(s) 2593
AjnI CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AleI CACNNNNGTG 1 cut(s) 2591
AloI GAACNNNNNNTCC 2 cut(s) 885, 917
Alw21I GWGCWC 2 cut(s) 1540, 2276
Alw26I GTCTC 8 cut(s) 73, 198, 611, 838, 1725, 2794, 2978, 3007
AlwI GGATC 4 cut(s) 2364, 2379, 2427, 2440
AlwNI CAGNNNCTG 1 cut(s) 2747
Ama87I CYCGRG 2 cut(s) 759, 2791
Aor13HI TCCGGA 2 cut(s) 460, 2646
AoxI GGCC 9 cut(s) 135, 1124, 1271, 1350, 1775, 2499, 2801, 2833, 3115
ApaI GGGCCC 1 cut(s) 1275
ApeKI GCWGC 5 cut(s) 450, 896, 1960, 2158, 2624
ArsI GACNNNNNNTTYG 2 cut(s) 2977, 3009
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 3 cut(s) 220, 1371, 2565
AspS9I GGNCC 6 cut(s) 136, 1125, 1271, 1272, 1626, 3029
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 6 cut(s) 86, 179, 185, 974, 1724, 2156
AvaI CYCGRG 2 cut(s) 759, 2791
AvaII GGWCC 2 cut(s) 1626, 3029
BaeGI GKGCMC 1 cut(s) 1275
BamHI GGATCC 1 cut(s) 2432
BanI GGYRCC 1 cut(s) 1368
BanII GRGCYC 3 cut(s) 1275, 1339, 2380
BauI CACGAG 1 cut(s) 2277
Bbv12I GWGCWC 2 cut(s) 1540, 2276
BbvI GCAGC 5 cut(s) 437, 883, 1972, 2170, 2611
BcgI CGANNNNNNTGC 2 cut(s) 3038, 3072
BciT130I CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
BclI TGATCA 2 cut(s) 1431, 1746
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 8 cut(s) 73, 198, 611, 838, 1725, 2794, 2978, 3007
BfaI CTAG 4 cut(s) 621, 1341, 1913, 3078
BfmI CTRYAG 4 cut(s) 2156, 2310, 2846, 2862
BfoI RGCGCY 1 cut(s) 1372
BglI GCCNNNNNGGC 1 cut(s) 134
BglII AGATCT 1 cut(s) 2696
BisI GCNGC 7 cut(s) 451, 897, 1046, 1961, 2159, 2625, 2801
BlpI GCTNAGC 2 cut(s) 6, 312
BlsI GCNGC 7 cut(s) 452, 898, 1047, 1962, 2160, 2626, 2802
Bme1390I CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
Bme18I GGWCC 2 cut(s) 1626, 3029
BmeT110I CYCGRG 2 cut(s) 759, 2791
BmgBI CACGTC 1 cut(s) 2593
BmgT120I GGNCC 6 cut(s) 136, 1125, 1271, 1272, 1626, 3029
BmiI GGNNCC 9 cut(s) 138, 1273, 1274, 1290, 1338, 1370, 1628, 2434, 2724
BmrFI CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
BmrI ACTGGG 1 cut(s) 1278
BmsI GCATC 9 cut(s) 205, 480, 514, 559, 1143, 1522, 2051, 2473, 2656
BmuI ACTGGG 1 cut(s) 1278
BoxI GACNNNNGTC 1 cut(s) 3019
BplI GAGNNNNNCTC 2 cut(s) 566, 598
BpmI CTGGAG 2 cut(s) 2226, 2304
Bpu10I CCTNAGC 1 cut(s) 2529
Bpu1102I GCTNAGC 2 cut(s) 6, 312
BpuEI CTTGAG 3 cut(s) 389, 568, 2290
BpuMI CCSGG 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 2885
BsaBI GATNNNNATC 2 cut(s) 1005, 2343
BsaHI GRCGYC 3 cut(s) 1369, 1756, 2020
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 4 cut(s) 132, 270, 724, 2487
BsaWI WCCGGW 3 cut(s) 460, 2646, 2894
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
Bse118I RCCGGY 2 cut(s) 155, 2962
Bse1I ACTGG 3 cut(s) 1273, 1594, 2173
Bse3DI GCAATG 4 cut(s) 851, 1018, 1395, 2791
Bse8I GATNNNNATC 2 cut(s) 1005, 2343
BseAI TCCGGA 2 cut(s) 460, 2646
BseBI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
BseCI ATCGAT 1 cut(s) 2885
BseDI CCNNGG 4 cut(s) 132, 270, 724, 2487
BseJI GATNNNNATC 2 cut(s) 1005, 2343
BseLI CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
BseMI GCAATG 4 cut(s) 851, 1018, 1395, 2791
BseNI ACTGG 3 cut(s) 1273, 1594, 2173
BseRI GAGGAG 7 cut(s) 81, 354, 359, 611, 614, 1804, 2042
BseSI GKGCMC 1 cut(s) 1275
BseXI GCAGC 5 cut(s) 437, 883, 1972, 2170, 2611
BseYI CCCAGC 1 cut(s) 1485
BsgI GTGCAG 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 2 cut(s) 1708, 2068
BshFI GGCC 9 cut(s) 137, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
BshNI GGYRCC 1 cut(s) 1368
BshVI ATCGAT 1 cut(s) 2885
BsiEI CGRYCG 2 cut(s) 1708, 2068
BsiHKAI GWGCWC 2 cut(s) 1540, 2276
BsiHKCI CYCGRG 2 cut(s) 759, 2791
BsiSI CCGG 7 cut(s) 156, 270, 461, 2502, 2647, 2895, 2963
BslFI GGGAC 3 cut(s) 28, 1612, 2230
BslI CCNNNNNNNGG 5 cut(s) 158, 512, 1081, 1138, 2092
BsmAI GTCTC 8 cut(s) 73, 198, 611, 838, 1725, 2794, 2978, 3007
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 3 cut(s) 28, 1612, 2230
BsnI GGCC 9 cut(s) 137, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 2 cut(s) 759, 2791
Bsp120I GGGCCC 1 cut(s) 1271
Bsp1286I GDGCHC 5 cut(s) 1275, 1339, 1540, 2276, 2380
Bsp13I TCCGGA 2 cut(s) 460, 2646
Bsp1720I GCTNAGC 2 cut(s) 6, 312
BspACI CCGC 7 cut(s) 73, 159, 442, 1045, 2093, 2617, 2800
BspANI GGCC 9 cut(s) 137, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
BspDI ATCGAT 1 cut(s) 2885
BspEI TCCGGA 2 cut(s) 460, 2646
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 1452
BspLI GGNNCC 9 cut(s) 138, 1273, 1274, 1290, 1338, 1370, 1628, 2434, 2724
BspMAI CTGCAG 2 cut(s) 2160, 2314
BspPI GGATC 4 cut(s) 2364, 2379, 2427, 2440
BspQI GCTCTTC 2 cut(s) 460, 2706
BspT107I GGYRCC 1 cut(s) 1368
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 4 cut(s) 851, 1018, 1395, 2791
BsrFI RCCGGY 2 cut(s) 155, 2962
BsrI ACTGG 3 cut(s) 1273, 1594, 2173
BssAI RCCGGY 2 cut(s) 155, 2962
BssECI CCNNGG 4 cut(s) 132, 270, 724, 2487
BssNI GRCGYC 3 cut(s) 1369, 1756, 2020
BssSI CACGAG 1 cut(s) 2277
BssT1I CCWWGG 1 cut(s) 2487
Bst2BI CACGAG 1 cut(s) 2277
Bst2UI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
Bst4CI ACNGT 5 cut(s) 1184, 2320, 2508, 2850, 3110
Bst6I CTCTTC 7 cut(s) 104, 460, 975, 2533, 2706, 2976, 3080
BstACI GRCGYC 3 cut(s) 1369, 1756, 2020
BstAPI GCANNNNNTGC 2 cut(s) 450, 1700
BstC8I GCNNGC 9 cut(s) 157, 365, 390, 735, 1558, 1595, 1613, 1943, 2460
BstEII GGTNACC 1 cut(s) 1084
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 1372
BstHHI GCGC 3 cut(s) 220, 1371, 2565
BstMAI GTCTC 8 cut(s) 73, 198, 611, 838, 1725, 2794, 2978, 3007
BstMCI CGRYCG 2 cut(s) 1708, 2068
BstNI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
BstNSI RCATGY 3 cut(s) 737, 1570, 1858
BstPAI GACNNNNGTC 1 cut(s) 3019
BstPI GGTNACC 1 cut(s) 1084
BstSCI CCNGG 7 cut(s) 132, 269, 723, 801, 1074, 1822, 2496
BstSFI CTRYAG 4 cut(s) 2156, 2310, 2846, 2862
BstSLI GKGCMC 1 cut(s) 1275
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 5 cut(s) 437, 883, 1972, 2170, 2611
BstX2I RGATCY 2 cut(s) 2432, 2696
BstXI CCANNNNNNTGG 1 cut(s) 2387
BstYI RGATCY 2 cut(s) 2432, 2696
Bsu15I ATCGAT 1 cut(s) 2885
BsuRI GGCC 9 cut(s) 137, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
BsuTUI ATCGAT 1 cut(s) 2885
BtrI CACGTC 1 cut(s) 2593
BtsI GCAGTG 1 cut(s) 2941
BtsIMutI CAGTG 3 cut(s) 1266, 2941, 2977
Cac8I GCNNGC 9 cut(s) 157, 365, 390, 735, 1558, 1595, 1613, 1943, 2460
CaiI CAGNNNCTG 1 cut(s) 2747
CciI TCATGA 1 cut(s) 1452
CfoI GCGC 3 cut(s) 220, 1371, 2565
Cfr10I RCCGGY 2 cut(s) 155, 2962
Cfr13I GGNCC 6 cut(s) 136, 1125, 1271, 1272, 1626, 3029
ClaI ATCGAT 1 cut(s) 2885
CseI GACGC 1 cut(s) 2009
Csp6I GTAC 4 cut(s) 1987, 2571, 2816, 2942
CviQI GTAC 4 cut(s) 1987, 2571, 2816, 2942
DinI GGCGCC 1 cut(s) 1370
DraI TTTAAA 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 2801
Eam1104I CTCTTC 7 cut(s) 104, 460, 975, 2533, 2706, 2976, 3080
EarI CTCTTC 7 cut(s) 104, 460, 975, 2533, 2706, 2976, 3080
Eco130I CCWWGG 1 cut(s) 2487
Eco24I GRGCYC 3 cut(s) 1275, 1339, 2380
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 1626, 3029
Eco57I CTGAAG 1 cut(s) 3045
Eco88I CYCGRG 2 cut(s) 759, 2791
Eco91I GGTNACC 1 cut(s) 1084
EcoO109I RGGNCCY 3 cut(s) 136, 1125, 1272
EcoO65I GGTNACC 1 cut(s) 1084
EcoRI GAATTC 2 cut(s) 1322, 1525
EcoRII CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
EcoT14I CCWWGG 1 cut(s) 2487
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 3 cut(s) 1275, 1339, 2380
EgeI GGCGCC 1 cut(s) 1370
EheI GGCGCC 1 cut(s) 1370
ErhI CCWWGG 1 cut(s) 2487
Esp3I CGTCTC 1 cut(s) 73
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 3 cut(s) 28, 1612, 2230
FauI CCCGC 2 cut(s) 80, 2086
FauNDI CATATG 1 cut(s) 2989
FbaI TGATCA 2 cut(s) 1431, 1746
FblI GTMKAC 4 cut(s) 1144, 1576, 1759, 2071
Fnu4HI GCNGC 7 cut(s) 451, 897, 1046, 1961, 2159, 2625, 2801
FriOI GRGCYC 3 cut(s) 1275, 1339, 2380
Fsp4HI GCNGC 7 cut(s) 451, 897, 1046, 1961, 2159, 2625, 2801
FspBI CTAG 4 cut(s) 621, 1341, 1913, 3078
FspI TGCGCA 1 cut(s) 2564
GlaI GCGC 3 cut(s) 219, 1370, 2564
GluI GCNGC 7 cut(s) 451, 897, 1046, 1961, 2159, 2625, 2801
GsaI CCCAGC 1 cut(s) 1489
GsuI CTGGAG 2 cut(s) 2226, 2304
HaeII RGCGCY 1 cut(s) 1372
HaeIII GGCC 9 cut(s) 137, 1126, 1273, 1352, 1777, 2501, 2803, 2835, 3117
HapII CCGG 7 cut(s) 156, 270, 461, 2502, 2647, 2895, 2963
HgaI GACGC 1 cut(s) 2009
HhaI GCGC 3 cut(s) 220, 1371, 2565
Hin1I GRCGYC 3 cut(s) 1369, 1756, 2020
Hin6I GCGC 3 cut(s) 218, 1369, 2563
HinP1I GCGC 3 cut(s) 218, 1369, 2563
HincII GTYRAC 2 cut(s) 1504, 1587
HindII GTYRAC 2 cut(s) 1504, 1587
HindIII AAGCTT 1 cut(s) 386
HpaII CCGG 7 cut(s) 156, 270, 461, 2502, 2647, 2895, 2963
HphI GGTGA 6 cut(s) 86, 179, 185, 974, 1724, 2156
Hpy166II GTNNAC 8 cut(s) 506, 1145, 1504, 1577, 1587, 1760, 2072, 2579
Hpy8I GTNNAC 8 cut(s) 506, 1145, 1504, 1577, 1587, 1760, 2072, 2579
Hpy99I CGWCG 3 cut(s) 702, 1575, 1758
HpyCH4III ACNGT 5 cut(s) 1184, 2320, 2508, 2850, 3110
HpyCH4IV ACGT 7 cut(s) 232, 751, 907, 1573, 1756, 2592, 2818
HpySE526I ACGT 7 cut(s) 232, 751, 907, 1573, 1756, 2592, 2818
Hsp92I GRCGYC 3 cut(s) 1369, 1756, 2020
HspAI GCGC 3 cut(s) 218, 1369, 2563
KasI GGCGCC 1 cut(s) 1368
Kpn2I TCCGGA 2 cut(s) 460, 2646
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Ksp22I TGATCA 2 cut(s) 1431, 1746
LguI GCTCTTC 2 cut(s) 460, 2706
LmnI GCTCC 6 cut(s) 444, 893, 1294, 1342, 2245, 2455
Lsp1109I GCAGC 5 cut(s) 437, 883, 1972, 2170, 2611
LweI GCATC 9 cut(s) 205, 480, 514, 559, 1143, 1522, 2051, 2473, 2656
MaeI CTAG 4 cut(s) 621, 1341, 1913, 3078
MaeII ACGT 7 cut(s) 232, 751, 907, 1573, 1756, 2592, 2818
MaeIII GTNAC 9 cut(s) 233, 588, 1025, 1084, 1264, 1315, 1888, 1976, 2755
MfeI CAATTG 2 cut(s) 671, 1133
MflI RGATCY 2 cut(s) 2432, 2696
MhlI GDGCHC 5 cut(s) 1275, 1339, 1540, 2276, 2380
Mly113I GGCGCC 1 cut(s) 1369
MlyI GAGTC 5 cut(s) 947, 2112, 2119, 2212, 2240
MmeI TCCRAC 6 cut(s) 235, 499, 957, 2410, 2529, 3129
Mph1103I ATGCAT 1 cut(s) 529
MroI TCCGGA 2 cut(s) 460, 2646
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 7 cut(s) 651, 947, 1035, 1121, 1347, 1422, 1689
MslI CAYNNNNRTG 2 cut(s) 818, 2591
MspA1I CMGCKG 2 cut(s) 10, 1045
MspI CCGG 7 cut(s) 156, 270, 461, 2502, 2647, 2895, 2963
MspR9I CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
MunI CAATTG 2 cut(s) 671, 1133
MvaI CCWGG 6 cut(s) 134, 725, 803, 1076, 1824, 2498
MvnI CGCG 1 cut(s) 75
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 1369
NciI CCSGG 1 cut(s) 271
NdeI CATATG 1 cut(s) 2989
NgoMIV GCCGGC 1 cut(s) 155
NlaIV GGNNCC 9 cut(s) 138, 1273, 1274, 1290, 1338, 1370, 1628, 2434, 2724
NmuCI GTSAC 3 cut(s) 233, 1025, 1264
NsbI TGCGCA 1 cut(s) 2564
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 3 cut(s) 737, 1570, 1858
OliI CACNNNNGTG 1 cut(s) 2591
PaeI GCATGC 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 759
PagI TCATGA 1 cut(s) 1452
PciI ACATGT 1 cut(s) 1854
PciSI GCTCTTC 2 cut(s) 460, 2706
PcsI WCGNNNNNNNCGW 5 cut(s) 72, 703, 757, 2380, 2598
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 7 cut(s) 266, 777, 917, 941, 1001, 2232, 2344
PflFI GACNNNGTC 2 cut(s) 40, 65
PflMI CCANNNNNTGG 1 cut(s) 512
PfoI TCCNGGA 2 cut(s) 1074, 1822
PkrI GCNGC 7 cut(s) 452, 898, 1047, 1962, 2160, 2626, 2802
Ple19I CGATCG 2 cut(s) 1708, 2068
PleI GAGTC 5 cut(s) 947, 2111, 2119, 2212, 2240
PluTI GGCGCC 1 cut(s) 1372
PpsI GAGTC 5 cut(s) 947, 2111, 2119, 2212, 2240
PscI ACATGT 1 cut(s) 1854
PshAI GACNNNNGTC 1 cut(s) 3019
PsiI TTATAA 3 cut(s) 1772, 2010, 2324
Psp6I CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
PspEI GGTNACC 1 cut(s) 1084
PspFI CCCAGC 1 cut(s) 1485
PspGI CCWGG 6 cut(s) 132, 723, 801, 1074, 1822, 2496
PspN4I GGNNCC 9 cut(s) 138, 1273, 1274, 1290, 1338, 1370, 1628, 2434, 2724
PspOMI GGGCCC 1 cut(s) 1271
PspPI GGNCC 6 cut(s) 136, 1125, 1271, 1272, 1626, 3029
PspXI VCTCGAGB 1 cut(s) 759
PstI CTGCAG 2 cut(s) 2160, 2314
PstNI CAGNNNCTG 1 cut(s) 2747
PsuI RGATCY 2 cut(s) 2432, 2696
PsyI GACNNNGTC 2 cut(s) 40, 65
PvuI CGATCG 2 cut(s) 1708, 2068
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 4 cut(s) 1988, 2572, 2817, 2943
RsaNI GTAC 4 cut(s) 1987, 2571, 2816, 2942
RseI CAYNNNNRTG 2 cut(s) 818, 2591
SapI GCTCTTC 2 cut(s) 460, 2706
SaqAI TTAA 7 cut(s) 651, 947, 1035, 1121, 1347, 1422, 1689
SatI GCNGC 7 cut(s) 451, 897, 1046, 1961, 2159, 2625, 2801
Sau96I GGNCC 6 cut(s) 136, 1125, 1271, 1272, 1626, 3029
SchI GAGTC 5 cut(s) 947, 2112, 2119, 2212, 2240
ScrFI CCNGG 7 cut(s) 134, 271, 725, 803, 1076, 1824, 2498
SduI GDGCHC 5 cut(s) 1275, 1339, 1540, 2276, 2380
SfaNI GCATC 9 cut(s) 205, 480, 514, 559, 1143, 1522, 2051, 2473, 2656
SfcI CTRYAG 4 cut(s) 2156, 2310, 2846, 2862
SfoI GGCGCC 1 cut(s) 1370
Sfr274I CTCGAG 1 cut(s) 759
SinI GGWCC 2 cut(s) 1626, 3029
SlaI CTCGAG 1 cut(s) 759
SmiMI CAYNNNNRTG 2 cut(s) 818, 2591
SmlI CTYRAG 4 cut(s) 368, 583, 759, 2269
SmoI CTYRAG 4 cut(s) 368, 583, 759, 2269
SphI GCATGC 1 cut(s) 737
SsiI CCGC 7 cut(s) 73, 159, 442, 1045, 2093, 2617, 2800
SspDI GGCGCC 1 cut(s) 1368
SspI AATATT 1 cut(s) 613
SspMI CTAG 4 cut(s) 621, 1341, 1913, 3078
StyD4I CCNGG 7 cut(s) 132, 269, 723, 801, 1074, 1822, 2496
StyI CCWWGG 1 cut(s) 2487
TaaI ACNGT 5 cut(s) 1184, 2320, 2508, 2850, 3110
TaiI ACGT 7 cut(s) 235, 754, 910, 1576, 1759, 2595, 2821
TauI GCSGC 2 cut(s) 1048, 2803
TfiI GAWTC 7 cut(s) 266, 777, 917, 941, 1001, 2232, 2344
Tru1I TTAA 7 cut(s) 651, 947, 1035, 1121, 1347, 1422, 1689
Tru9I TTAA 7 cut(s) 651, 947, 1035, 1121, 1347, 1422, 1689
TscAI CASTG 3 cut(s) 1273, 2941, 2977
TseFI GTSAC 3 cut(s) 233, 1025, 1264
TseI GCWGC 5 cut(s) 450, 896, 1960, 2158, 2624
Tsp45I GTSAC 3 cut(s) 233, 1025, 1264
TspDTI ATGAA 8 cut(s) 1221, 1406, 1771, 1818, 2248, 2870, 2967, 3087
TspGWI ACGGA 1 cut(s) 1742
TspRI CASTG 3 cut(s) 1273, 2941, 2977
Tth111I GACNNNGTC 2 cut(s) 40, 65
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 1626, 3029
XceI RCATGY 3 cut(s) 737, 1570, 1858
XhoI CTCGAG 1 cut(s) 759
XmiI GTMKAC 4 cut(s) 1144, 1576, 1759, 2071
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 4 cut(s) 621, 1341, 1913, 3078
ZraI GACGTC 1 cut(s) 1757
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.