Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011306

Physical Location & Seq

Genomic Coordinates Reverse (-)

2114151 .. 2114948

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGTTGTGTTGTGCCGTTGTTACAGAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAGGAATGGATCCTAAATTCCTAAGAAACCAGAGGTATGCAAGGAAGCACAACGTCAAGAGTGGCGAGAATGCTGGTGTCGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29e

Protein Analysis

83

Amino Acids

9.39

Weight (kDa)

10.55

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29e	PF01779	25 - 64	3.4e-22	Ribosomal L29e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06680 AT3G06680 AT3G06680 AT3G06700 AT3G06700 AT3G06700
fragaria_vesca	FvH4_4g19430
malus_domestica	MD16G1157600.v1.1
prunus_persica	Prupe.1G122500_v2.0.a1 Prupe.1G122500_v2.0.a1
pyrus_communis	pycom13g13420 pycom16g13260
rosa_chinensis	RchiOBHm_Chr4g0424471
rosa_multiflora	Rmu_sc0002603.1_g000002 Rmu_sc0003567.1_g000006
rosa_roxburghii	Rroxscaffold_5G00366410
rosa_rugosa	Rorug02G0465500 Rorug04G0198000
rosa_samantha	Rh4BG259500
rosa_wichuraiana	Rw4G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AclWI	GGATC	2 cut(s)	167, 180
AcsI	RAATTY	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	164
Alw26I	GTCTC	2 cut(s)	30, 136
AlwI	GGATC	2 cut(s)	167, 180
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	94, 115
BamHI	GGATCC	1 cut(s)	172
BceAI	ACGGC	2 cut(s)	38, 105
BcoDI	GTCTC	2 cut(s)	30, 136
BmiI	GGNNCC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	108, 137
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	108, 137
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	30, 136
BsmBI	CGTCTC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	167, 180
BssECI	CCNNGG	2 cut(s)	108, 137
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	2 cut(s)	108, 137
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	39, 185
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	94, 115
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	2 cut(s)	30, 136
BstMBI	GATC	1 cut(s)	172
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	172
CfoI	GCGC	2 cut(s)	94, 115
CseI	GACGC	1 cut(s)	12
CviJI	RGCY	1 cut(s)	136
CviKI_1	RGCY	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	39, 185
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	108, 137
EcoT14I	CCWWGG	2 cut(s)	108, 137
ErhI	CCWWGG	2 cut(s)	108, 137
Esp3I	CGTCTC	1 cut(s)	30
FaiI	YATR	2 cut(s)	117, 201
GlaI	GCGC	2 cut(s)	93, 114
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	2 cut(s)	94, 115
Hin6I	GCGC	2 cut(s)	92, 113
HinP1I	GCGC	2 cut(s)	92, 113
HinfI	GANTC	2 cut(s)	82, 126
Hpy188III	TCNNGA	2 cut(s)	130, 220
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	39, 185
HpySE526I	ACGT	1 cut(s)	216
HspAI	GCGC	2 cut(s)	92, 113
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	175, 206, 222
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	3, 58, 149
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	91
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	3 cut(s)	27, 158, 189
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	1 cut(s)	23
NdeII	GATC	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	2 cut(s)	3, 149
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	82, 126
PflFI	GACNNNGTC	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	172
SetI	ASST	3 cut(s)	10, 200, 219
Sse9I	AATT	1 cut(s)	179
StyI	CCWWGG	2 cut(s)	108, 137
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	77, 243
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	82, 126
TseFI	GTSAC	2 cut(s)	3, 149
Tsp45I	GTSAC	2 cut(s)	3, 149
TspGWI	ACGGA	1 cut(s)	138
Tth111I	GACNNNGTC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.