Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011306

Physical Location & Seq

Genomic Coordinates Reverse (-)

2117127 .. 2118074

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAATGGACCCTAAGTTCCTGAGGAACCAGAGGTACGCAAGGAAGCACAACGTCAAGGCCGGCGAGAATGCTAGCGCTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29e

Protein Analysis

61

Amino Acids

7.02

Weight (kDa)

11.39

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29e	PF01779	3 - 42	1.4e-22	Ribosomal L29e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06680 AT3G06680 AT3G06680 AT3G06700 AT3G06700 AT3G06700
fragaria_vesca	FvH4_4g19430
malus_domestica	MD16G1157600.v1.1
prunus_persica	Prupe.1G122500_v2.0.a1 Prupe.1G122500_v2.0.a1
pyrus_communis	pycom13g13420 pycom16g13260
rosa_chinensis	RchiOBHm_Chr4g0424471
rosa_multiflora	Rmu_sc0002603.1_g000002 Rmu_sc0003567.1_g000006
rosa_roxburghii	Rroxscaffold_5G00366410
rosa_rugosa	Rorug02G0465500 Rorug04G0198000
rosa_samantha	Rh4BG259500
rosa_wichuraiana	Rw4G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	134
AfeI	AGCGCT	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	98
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
Alw26I	GTCTC	1 cut(s)	70
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	2 cut(s)	3, 156
AspLEI	GCGC	2 cut(s)	28, 176
AspS9I	GGNCC	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	108, 125
BmtI	GCTAGC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	34
Bse21I	CCTNAGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	5, 158
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	5, 158
BspANI	GGCC	2 cut(s)	5, 158
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	108, 125
BspOI	GCTAGC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	160, 172
BstDEI	CTNAG	2 cut(s)	111, 119
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	28, 176
BstMAI	GTCTC	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	5, 158
Cac8I	GCNNGC	2 cut(s)	160, 172
CfoI	GCGC	2 cut(s)	28, 176
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	4 cut(s)	5, 47, 70, 158
CviKI_1	RGCY	4 cut(s)	5, 47, 70, 158
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	111, 119
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	106
Eco47III	AGCGCT	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaiI	YATR	1 cut(s)	30
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	2 cut(s)	27, 175
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	5, 158
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	2 cut(s)	28, 176
Hin6I	GCGC	2 cut(s)	26, 174
HinP1I	GCGC	2 cut(s)	26, 174
HinfI	GANTC	2 cut(s)	16, 60
HpaII	CCGG	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	64, 118
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	111, 119
HpySE526I	ACGT	1 cut(s)	150
HspAI	GCGC	2 cut(s)	26, 174
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
LpnPI	CCDG	5 cut(s)	47, 109, 131, 140, 172
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	83
MboII	GAAGA	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	92, 114, 123
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	172
NaeI	GCCGGC	1 cut(s)	160
NgoMIV	GCCGGC	1 cut(s)	158
NheI	GCTAGC	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	108, 125
NmuCI	GTSAC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	16, 60
PflFI	GACNNNGTC	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	108, 125
PspPI	GGNCC	1 cut(s)	106
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
PsyI	GACNNNGTC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	2 cut(s)	134, 153
SinI	GGWCC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	16, 60
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	72
Tth111I	GACNNNGTC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	106
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.