RchiOBHm_Chr4g0424471

Belongs to the eukaryotic ribosomal protein eL29 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011306
Physical Location & Seq
Forward (+)
50070359 .. 50072500
2142 bp
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UTR
Exon/CDS
Intron
PRQ39374

Sequence Viewer

Length: 183 bp
ATGGCCAAGTCAAAGAATCACACAGCTCACAACCAGTCCCGCAAGGCCCACAGGAATGGCATCAAGAAGCCCCAGAGGCACCGCCACACCTCCACCAAGGGGATGGATCCCAAGTTTCTGAGGAACCAGAGGTACGCCAGGAAGCACAACAACACCAAGACCGAAGAGTCGGCCGAGGAGTAG

Protein Analysis

60

Amino Acids

7.1

Weight (kDa)

11.09

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L29e PF01779 3 - 42 2.5e-25 Ribosomal L29e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 78
AciI CCGC 2 cut(s) 40, 82
AclWI GGATC 2 cut(s) 101, 114
AcoI YGGCCR 2 cut(s) 3, 171
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 99
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 2 cut(s) 101, 114
AoxI GGCC 3 cut(s) 3, 45, 171
AspS9I GGNCC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 78
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 3 cut(s) 80, 108, 125
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 96, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 96, 174
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 5, 47, 173
BshNI GGYRCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 3 cut(s) 5, 47, 173
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 2 cut(s) 40, 82
BspANI GGCC 3 cut(s) 5, 47, 173
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 80, 108, 125
BspPI GGATC 2 cut(s) 101, 114
BspT107I GGYRCC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 96, 174
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 2 cut(s) 56, 103
BstYI RGATCY 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 5, 47, 173
BtsCI GGATG 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 5 cut(s) 5, 26, 47, 70, 173
CviKI_1 RGCY 5 cut(s) 5, 26, 47, 70, 173
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 119
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 3, 171
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 96
Eco52I CGGCCG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaqI GGGAC 1 cut(s) 22
FauI CCCGC 1 cut(s) 47
FokI GGATG 1 cut(s) 115
HaeIII GGCC 3 cut(s) 5, 47, 173
HinfI GANTC 2 cut(s) 16, 167
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 119
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 6 cut(s) 37, 47, 86, 124, 140, 151
LweI GCATC 1 cut(s) 69
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 5 cut(s) 69, 100, 114, 123, 169
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 106
NlaIV GGNNCC 3 cut(s) 80, 108, 125
PfeI GAWTC 1 cut(s) 16
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 3 cut(s) 80, 108, 125
PspPI GGNCC 1 cut(s) 46
PsrI GAACNNNNNNTAC 2 cut(s) 116, 148
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 54
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 139
SetI ASST 3 cut(s) 28, 92, 134
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 54
SsiI CCGC 2 cut(s) 40, 82
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 96
TaqII GACCGA 1 cut(s) 176
TfiI GAWTC 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.