Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011306

Physical Location & Seq

Genomic Coordinates Reverse (-)

12630598 .. 12631428

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1157600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCCAAGTCGAAGAATCACACCGCCCACAACCAGTCCCGAAAGGCCCACAGGAACGGTATCAAGAAGCCTAAGAGGCACCGCCACACTTCCACCAAAGGGATGGACCCCAAGTTTCTGAGGAACCAGAGGTACGCCAGGAAGCACAACAACACCAAGAACGAATCCGCCTCCGGTGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29e

Protein Analysis

62

Amino Acids

7.13

Weight (kDa)

11.4

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29e	PF01779	3 - 42	3.1e-25	Ribosomal L29e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06680 AT3G06680 AT3G06680 AT3G06700 AT3G06700 AT3G06700
fragaria_vesca	FvH4_4g19430
malus_domestica	MD16G1157600.v1.1
prunus_persica	Prupe.1G122500_v2.0.a1 Prupe.1G122500_v2.0.a1
pyrus_communis	pycom13g13420 pycom16g13260
rosa_chinensis	RchiOBHm_Chr4g0424471
rosa_multiflora	Rmu_sc0002603.1_g000002 Rmu_sc0003567.1_g000006
rosa_roxburghii	Rroxscaffold_5G00366410
rosa_rugosa	Rorug02G0465500 Rorug04G0198000
rosa_samantha	Rh4BG259500
rosa_wichuraiana	Rw4G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AciI	CCGC	3 cut(s)	24, 82, 168
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	3, 45
AspS9I	GGNCC	2 cut(s)	46, 106
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	78
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	46, 106
BmiI	GGNNCC	3 cut(s)	80, 108, 125
BmrFI	CCNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	5, 47
BshNI	GGYRCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	5, 47
BspACI	CCGC	3 cut(s)	24, 82, 168
BspANI	GGCC	2 cut(s)	5, 47
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	80, 108, 125
BspT107I	GGYRCC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	72, 119
BstF5I	GGATG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	5, 47
BtsCI	GGATG	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	46, 106
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	3 cut(s)	5, 47, 70
CviKI_1	RGCY	3 cut(s)	5, 47, 70
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	72, 119
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	137
FaqI	GGGAC	1 cut(s)	22
FokI	GGATG	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	5, 47
HapII	CCGG	1 cut(s)	174
HinfI	GANTC	2 cut(s)	16, 164
HpaII	CCGG	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	39, 64
HpyCH4III	ACNGT	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	72, 119
LpnPI	CCDG	5 cut(s)	37, 47, 124, 140, 151
MboII	GAAGA	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	69, 114, 123, 181
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	76
NlaIV	GGNNCC	3 cut(s)	80, 108, 125
PfeI	GAWTC	2 cut(s)	16, 164
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	80, 108, 125
PspPI	GGNCC	2 cut(s)	46, 106
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	46, 106
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	1 cut(s)	134
SinI	GGWCC	1 cut(s)	106
SsiI	CCGC	3 cut(s)	24, 82, 168
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	16, 164
VpaK11BI	GGWCC	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.