Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002603.1

Orthogroup ID

OG0011306

Physical Location & Seq

Genomic Coordinates Forward (+)

1842 .. 5145

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002603.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgttggcaatgacggatcggtgctccgctgcagattcgttgtggtttggcgctggtaagagattacatggtcgatctgggcttcaacttttggatacgaccacaaggtcgcctacctcttggtggcgggctgcaacggaatggttagggcaacgaagagtgggtctggattggtgcgatagaaagctaacgctgatgtctggtgaagcctggtttggtggcgctggggttgaggtttgggaattctctccatggtggaattgtccttggcttggatggcagaatatggtggtcgagtttcacaatctcaatcccaactttacggtggcggtttggttgttactcattgtagctcgcgggtatgagcgtaaaatttggttaggggttgggcatttttggctcatggaagtcactcatgttgaccgtcccctagctagggtttcactcagatataaaggaccaccttctcgtttcgctccgccaaaagagaagaagaaccctagcgcagatcgaagctctcactctcttttcgaaatggccaagtcaaagaatcacacagctcacaaccagtcccgcaaggcccacaggaatggcatcaagaagccccagaggcaccgccacacctccaccaaggggatggatcccaagtttctgaggaaccagaggtacgccaggaagcacaacaacaccaagaccgaagagtcggccgaggaccattgtctgtggctcgttgggtttgctggacggggagggactggtagtggttggttggcagctcaacgcatccaatttcacaggcggcaaggacaattgcagcacaggaatttaggaaggtggtggcagtttcacgaggcgtgtcgactttctgagggcgggttcagcagtaaaaaccctactggtcggggtcacgacgccgtgtttcatgttttaagtggtgggatggggttttggccaagtcagccttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29e

Protein Analysis

322

Amino Acids

36.98

Weight (kDa)

10.51

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06680 AT3G06680 AT3G06680 AT3G06700 AT3G06700 AT3G06700
fragaria_vesca	FvH4_4g19430
malus_domestica	MD16G1157600.v1.1
prunus_persica	Prupe.1G122500_v2.0.a1 Prupe.1G122500_v2.0.a1
pyrus_communis	pycom13g13420 pycom16g13260
rosa_chinensis	RchiOBHm_Chr4g0424471
rosa_multiflora	Rmu_sc0002603.1_g000002 Rmu_sc0003567.1_g000006
rosa_roxburghii	Rroxscaffold_5G00366410
rosa_rugosa	Rorug02G0465500 Rorug04G0198000
rosa_samantha	Rh4BG259500
rosa_wichuraiana	Rw4G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	106, 700
AccB1I	GGYRCC	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	859
AccII	CGCG	1 cut(s)	357
AciI	CCGC	9 cut(s)	27, 127, 329, 357, 479, 574, 616, 799, 873
AclWI	GGATC	3 cut(s)	24, 635, 648
AcoI	YGGCCR	3 cut(s)	537, 705, 950
AcsI	RAATTY	3 cut(s)	242, 372, 823
AcyI	GRCGYC	1 cut(s)	912
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	5 cut(s)	123, 272, 435, 436, 633
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	209, 671
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	6 cut(s)	187, 353, 434, 516, 560, 776
AluI	AGCT	6 cut(s)	187, 353, 434, 516, 560, 776
Alw21I	GWGCWC	1 cut(s)	26
AlwI	GGATC	3 cut(s)	24, 635, 648
AoxI	GGCC	4 cut(s)	537, 579, 705, 950
ApeKI	GCWGC	4 cut(s)	29, 131, 773, 814
ApoI	RAATTY	3 cut(s)	242, 372, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AspLEI	GCGC	3 cut(s)	53, 224, 506
AspS9I	GGNCC	3 cut(s)	458, 580, 712
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	531
AvaII	GGWCC	2 cut(s)	458, 712
BalI	TGGCCA	2 cut(s)	539, 952
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	612
BauI	CACGAG	1 cut(s)	848
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	4 cut(s)	16, 118, 785, 826
BccI	CCATC	3 cut(s)	270, 631, 934
BceAI	ACGGC	1 cut(s)	899
BciT130I	CCWGG	2 cut(s)	211, 673
BciVI	GTATCC	1 cut(s)	88
BfaI	CTAG	3 cut(s)	431, 435, 501
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	2 cut(s)	54, 225
BfuI	GTATCC	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	610
BisI	GCNGC	5 cut(s)	30, 132, 774, 800, 815
BlsI	GCNGC	5 cut(s)	31, 133, 775, 801, 816
Bme1390I	CCNGG	2 cut(s)	211, 673
Bme18I	GGWCC	2 cut(s)	458, 712
BmgT120I	GGNCC	3 cut(s)	458, 580, 712
BmiI	GGNNCC	3 cut(s)	614, 642, 659
BmrFI	CCNGG	2 cut(s)	211, 673
BmsI	GCATC	2 cut(s)	603, 792
BoxI	GACNNNNGTC	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	912
BsaJI	CCNNGG	4 cut(s)	251, 266, 630, 708
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 272, 435, 436, 633
Bse1I	ACTGG	3 cut(s)	568, 760, 901
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	211, 673
BseDI	CCNNGG	4 cut(s)	251, 266, 630, 708
BseGI	GGATG	4 cut(s)	281, 642, 783, 945
BseLI	CCNNNNNNNGG	5 cut(s)	123, 272, 435, 436, 633
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	460, 644, 858
BseNI	ACTGG	3 cut(s)	568, 760, 901
BseX3I	CGGCCG	1 cut(s)	705
BseXI	GCAGC	4 cut(s)	16, 118, 785, 826
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	357
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	4 cut(s)	539, 581, 707, 952
BshNI	GGYRCC	1 cut(s)	612
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	26
BslFI	GGGAC	3 cut(s)	411, 556, 766
BslI	CCNNNNNNNGG	5 cut(s)	123, 272, 435, 436, 633
BsmFI	GGGAC	3 cut(s)	411, 556, 766
BsnI	GGCC	4 cut(s)	539, 581, 707, 952
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	16, 74, 508, 640
Bsp19I	CCATGG	1 cut(s)	251
BspACI	CCGC	9 cut(s)	27, 127, 329, 357, 479, 574, 616, 799, 873
BspANI	GGCC	4 cut(s)	539, 581, 707, 952
BspCNI	CTCAG	3 cut(s)	459, 645, 859
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	614, 642, 659
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	3 cut(s)	24, 635, 648
BspT104I	TTCGAA	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	3 cut(s)	568, 760, 901
BssECI	CCNNGG	4 cut(s)	251, 266, 630, 708
BssMI	GATC	4 cut(s)	16, 74, 508, 640
BssNI	GRCGYC	1 cut(s)	912
BssSI	CACGAG	1 cut(s)	848
BssT1I	CCWWGG	3 cut(s)	251, 266, 630
Bst2BI	CACGAG	1 cut(s)	848
Bst2UI	CCWGG	2 cut(s)	211, 673
Bst4CI	ACNGT	2 cut(s)	325, 425
Bst6I	CTCTTC	2 cut(s)	151, 693
BstACI	GRCGYC	1 cut(s)	912
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	129, 355
BstDEI	CTNAG	3 cut(s)	446, 653, 867
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	4 cut(s)	281, 642, 783, 945
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	2 cut(s)	54, 225
BstHHI	GCGC	3 cut(s)	53, 224, 506
BstKTI	GATC	4 cut(s)	19, 77, 511, 643
BstMBI	GATC	4 cut(s)	16, 74, 508, 640
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	5 cut(s)	277, 397, 610, 879, 958
BstNI	CCWGG	2 cut(s)	211, 673
BstPAI	GACNNNNGTC	1 cut(s)	717
BstSCI	CCNGG	2 cut(s)	209, 671
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	16, 118, 785, 826
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	2 cut(s)	590, 637
BstYI	RGATCY	1 cut(s)	640
BstZI	CGGCCG	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	4 cut(s)	539, 581, 707, 952
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	281, 642, 783, 945
Cac8I	GCNNGC	2 cut(s)	129, 355
CfoI	GCGC	3 cut(s)	53, 224, 506
Cfr13I	GGNCC	3 cut(s)	458, 580, 712
CseI	GACGC	1 cut(s)	920
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	5 cut(s)	68, 252, 403, 416, 923
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	3 cut(s)	446, 653, 867
DpnI	GATC	4 cut(s)	18, 76, 510, 642
DpnII	GATC	4 cut(s)	16, 74, 508, 640
DrdI	GACNNNNNNGTC	2 cut(s)	106, 700
DseDI	GACNNNNNNGTC	2 cut(s)	106, 700
EaeI	YGGCCR	3 cut(s)	537, 705, 950
EagI	CGGCCG	1 cut(s)	705
Eam1104I	CTCTTC	2 cut(s)	151, 693
EarI	CTCTTC	2 cut(s)	151, 693
EciI	GGCGGA	1 cut(s)	468
EclXI	CGGCCG	1 cut(s)	705
Eco130I	CCWWGG	3 cut(s)	251, 266, 630
Eco47I	GGWCC	2 cut(s)	458, 712
Eco52I	CGGCCG	1 cut(s)	705
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	209, 671
EcoT14I	CCWWGG	3 cut(s)	251, 266, 630
ErhI	CCWWGG	3 cut(s)	251, 266, 630
FaeI	CATG	5 cut(s)	71, 255, 406, 419, 926
FaiI	YATR	8 cut(s)	69, 253, 287, 363, 404, 417, 453, 924
FalI	AAGNNNNNCTT	1 cut(s)	946
FaqI	GGGAC	3 cut(s)	411, 556, 766
FatI	CATG	5 cut(s)	67, 251, 402, 415, 922
FauI	CCCGC	4 cut(s)	120, 350, 581, 866
FblI	GTMKAC	1 cut(s)	859
Fnu4HI	GCNGC	5 cut(s)	30, 132, 774, 800, 815
FokI	GGATG	4 cut(s)	288, 649, 770, 952
Fsp4HI	GCNGC	5 cut(s)	30, 132, 774, 800, 815
FspBI	CTAG	3 cut(s)	431, 435, 501
GlaI	GCGC	3 cut(s)	52, 223, 505
GluI	GCNGC	5 cut(s)	30, 132, 774, 800, 815
GsaI	CCCAGC	1 cut(s)	228
HaeII	RGCGCY	2 cut(s)	54, 225
HaeIII	GGCC	4 cut(s)	539, 581, 707, 952
HgaI	GACGC	1 cut(s)	920
HhaI	GCGC	3 cut(s)	53, 224, 506
Hin1I	GRCGYC	1 cut(s)	912
Hin1II	CATG	5 cut(s)	71, 255, 406, 419, 926
Hin6I	GCGC	3 cut(s)	51, 222, 504
HinP1I	GCGC	3 cut(s)	51, 222, 504
HincII	GTYRAC	2 cut(s)	421, 860
HindII	GTYRAC	2 cut(s)	421, 860
HinfI	GANTC	3 cut(s)	35, 550, 701
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	421, 860
Hpy188I	TCNGA	3 cut(s)	449, 654, 868
Hpy188III	TCNNGA	4 cut(s)	167, 598, 848, 908
Hpy8I	GTNNAC	2 cut(s)	421, 860
Hpy99I	CGWCG	1 cut(s)	914
HpyAV	CCTTC	2 cut(s)	474, 825
HpyCH4III	ACNGT	2 cut(s)	325, 425
HpyCH4V	TGCA	3 cut(s)	32, 134, 814
HpyF10VI	GCNNNNNNNGC	5 cut(s)	277, 397, 610, 879, 958
HpyF3I	CTNAG	3 cut(s)	446, 653, 867
Hsp92I	GRCGYC	1 cut(s)	912
Hsp92II	CATG	5 cut(s)	71, 255, 406, 419, 926
HspAI	GCGC	3 cut(s)	51, 222, 504
Kzo9I	GATC	4 cut(s)	16, 74, 508, 640
LmnI	GCTCC	2 cut(s)	29, 481
Lsp1109I	GCAGC	4 cut(s)	16, 118, 785, 826
LweI	GCATC	2 cut(s)	603, 792
MaeI	CTAG	3 cut(s)	431, 435, 501
MaeIII	GTNAC	3 cut(s)	339, 409, 905
MalI	GATC	4 cut(s)	18, 76, 510, 642
MboI	GATC	4 cut(s)	16, 74, 508, 640
MboII	GAAGA	4 cut(s)	168, 502, 505, 710
MfeI	CAATTG	1 cut(s)	809
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	2 cut(s)	539, 952
MluCI	AATT	6 cut(s)	242, 259, 372, 788, 809, 823
MluNI	TGGCCA	2 cut(s)	539, 952
MlyI	GAGTC	1 cut(s)	710
Mox20I	TGGCCA	2 cut(s)	539, 952
MscI	TGGCCA	2 cut(s)	539, 952
MseI	TTAA	1 cut(s)	929
MslI	CAYNNNNRTG	1 cut(s)	588
Msp20I	TGGCCA	2 cut(s)	539, 952
MspA1I	CMGCKG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	211, 673
MunI	CAATTG	1 cut(s)	809
MvaI	CCWGG	2 cut(s)	211, 673
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	5 cut(s)	277, 397, 610, 879, 958
NcoI	CCATGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	16, 74, 508, 640
NlaIII	CATG	5 cut(s)	71, 255, 406, 419, 926
NlaIV	GGNNCC	3 cut(s)	614, 642, 659
NmeAIII	GCCGAG	1 cut(s)	733
NmuCI	GTSAC	2 cut(s)	409, 905
NspV	TTCGAA	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	35, 550
PkrI	GCNGC	5 cut(s)	31, 133, 775, 801, 816
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PshAI	GACNNNNGTC	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	209, 671
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	209, 671
PspN4I	GGNNCC	3 cut(s)	614, 642, 659
PspPI	GGNCC	3 cut(s)	458, 580, 712
PsrI	GAACNNNNNNTAC	2 cut(s)	650, 682
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	858
SaqAI	TTAA	1 cut(s)	929
SatI	GCNGC	5 cut(s)	30, 132, 774, 800, 815
Sau3AI	GATC	4 cut(s)	16, 74, 508, 640
Sau96I	GGNCC	3 cut(s)	458, 580, 712
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	211, 673
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	2 cut(s)	603, 792
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	531
SinI	GGWCC	2 cut(s)	458, 712
SmiMI	CAYNNNNRTG	1 cut(s)	588
Sse9I	AATT	6 cut(s)	242, 259, 372, 788, 809, 823
SsiI	CCGC	9 cut(s)	27, 127, 329, 357, 479, 574, 616, 799, 873
SspMI	CTAG	3 cut(s)	431, 435, 501
StyD4I	CCNGG	2 cut(s)	209, 671
StyI	CCWWGG	3 cut(s)	251, 266, 630
TaaI	ACNGT	2 cut(s)	325, 425
TaqI	TCGA	5 cut(s)	73, 294, 511, 531, 859
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	6 cut(s)	242, 259, 372, 788, 809, 823
TauI	GCSGC	1 cut(s)	802
TfiI	GAWTC	2 cut(s)	35, 550
Tru1I	TTAA	1 cut(s)	929
Tru9I	TTAA	1 cut(s)	929
TseFI	GTSAC	2 cut(s)	409, 905
TseI	GCWGC	4 cut(s)	29, 131, 773, 814
Tsp45I	GTSAC	2 cut(s)	409, 905
TspDTI	ATGAA	1 cut(s)	911
TspGWI	ACGGA	2 cut(s)	29, 152
VpaK11BI	GGWCC	2 cut(s)	458, 712
XapI	RAATTY	3 cut(s)	242, 372, 823
XcmI	CCANNNNNNNNNTGG	2 cut(s)	322, 634
XmiI	GTMKAC	1 cut(s)	859
XspI	CTAG	3 cut(s)	431, 435, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.