Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011306

Physical Location & Seq

Genomic Coordinates Reverse (-)

9435655 .. 9436399

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACGCAGGGGAGGGGAATAGGTGGGGTACTTTCGTCATTACGAAAATACAAGAACCGGCAGCTAGGGTTTTGGAGGAGCTTTCATATAAAGCTCAACTTCCCATTTTACAGAGCCAAAGAGAACACCCAAAGCGTCGTTGCGGCTATTTCCATCGTTCTCCTTCCGAGATGGCCAAGTCGAAGAATCACACCGCCCACAACCAGTCGCGCAAGGCCCACAGGAACGGCATCAAGAAGCCTAAGAGGCACCGCCACACTTCCACCAAAGGGATGGACCCCAAGTTTCTGAGGAACCAGAGGTATGCCAGGAAACACAACAACACCAAGAATGAATCTGCCTCCGGAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29e

Protein Analysis

119

Amino Acids

13.73

Weight (kDa)

10.56

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06680 AT3G06680 AT3G06680 AT3G06700 AT3G06700 AT3G06700
fragaria_vesca	FvH4_4g19430
malus_domestica	MD16G1157600.v1.1
prunus_persica	Prupe.1G122500_v2.0.a1 Prupe.1G122500_v2.0.a1
pyrus_communis	pycom13g13420 pycom16g13260
rosa_chinensis	RchiOBHm_Chr4g0424471
rosa_multiflora	Rmu_sc0002603.1_g000002 Rmu_sc0003567.1_g000006
rosa_roxburghii	Rroxscaffold_5G00366410
rosa_rugosa	Rorug02G0465500 Rorug04G0198000
rosa_samantha	Rh4BG259500
rosa_wichuraiana	Rw4G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	3 cut(s)	144, 195, 253
AcoI	YGGCCR	1 cut(s)	174
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	65, 82, 95
AluI	AGCT	3 cut(s)	65, 82, 95
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	2 cut(s)	174, 216
ApeKI	GCWGC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	217, 277
AvaII	GGWCC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BalI	TGGCCA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	3 cut(s)	162, 166, 268
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	310
BfaI	CTAG	1 cut(s)	66
BglI	GCCNNNNNGGC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	63, 145
BlsI	GCNGC	2 cut(s)	64, 146
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	217, 277
BmiI	GGNNCC	3 cut(s)	251, 279, 296
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	176, 218
BshNI	GGYRCC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	59, 345
BslI	CCNNNNNNNGG	1 cut(s)	270
BsnI	GGCC	2 cut(s)	176, 218
Bsp13I	TCCGGA	1 cut(s)	344
BspACI	CCGC	3 cut(s)	144, 195, 253
BspANI	GGCC	2 cut(s)	176, 218
BspCNI	CTCAG	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	251, 279, 296
BspT107I	GGYRCC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	243, 290
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	176, 218
BtsCI	GGATG	1 cut(s)	279
CfoI	GCGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	217, 277
CseI	GACGC	2 cut(s)	14, 125
Csp6I	GTAC	1 cut(s)	30
CviJI	RGCY	8 cut(s)	65, 82, 95, 117, 147, 176, 218, 241
CviKI_1	RGCY	8 cut(s)	65, 82, 95, 117, 147, 176, 218, 241
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	243, 290
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	308
FaiI	YATR	3 cut(s)	88, 90, 306
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
Fnu4HI	GCNGC	2 cut(s)	63, 145
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	63, 145
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	63, 145
HaeIII	GGCC	2 cut(s)	176, 218
HapII	CCGG	2 cut(s)	59, 345
HgaI	GACGC	2 cut(s)	14, 125
HhaI	GCGC	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	187, 335
HpaII	CCGG	2 cut(s)	59, 345
Hpy188I	TCNGA	2 cut(s)	169, 291
Hpy188III	TCNNGA	2 cut(s)	235, 345
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	243, 290
HspAI	GCGC	1 cut(s)	211
Kpn2I	TCCGGA	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	72, 208, 218, 295, 311, 322
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	66
MboII	GAAGA	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	176
MnlI	CCTC	6 cut(s)	7, 70, 240, 285, 294, 352
Mox20I	TGGCCA	1 cut(s)	176
MroI	TCCGGA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	2 cut(s)	59, 345
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	247
NlaIV	GGNNCC	3 cut(s)	251, 279, 296
PfeI	GAWTC	2 cut(s)	187, 335
PkrI	GCNGC	2 cut(s)	64, 146
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	3 cut(s)	251, 279, 296
PspPI	GGNCC	2 cut(s)	217, 277
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	63, 145
Sau96I	GGNCC	2 cut(s)	217, 277
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	5 cut(s)	26, 67, 84, 97, 305
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	1 cut(s)	277
SsiI	CCGC	3 cut(s)	144, 195, 253
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	308
TaqI	TCGA	1 cut(s)	182
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	187, 335
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	75, 348
VpaK11BI	GGWCC	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.