Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011306

Physical Location & Seq

Genomic Coordinates Forward (+)

23076312 .. 23077258

Gene Structure 947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCCAAGTCAAAGAATCACACAGCTCACAACCAGTCCCGCAAGGCCCACAGGAATGGCATCAAGAAGCCCCAGAGGCACCGCCACACTTCCACCAAGGGGATGGATCCCAAGTTTCTGAGGAACCAGAGGTATGCCAGGAAGCACAACAACGCCCCCAAGACCGAAGAGTCGGCCGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29e

Protein Analysis

62

Amino Acids

7.17

Weight (kDa)

11.09

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29e	PF01779	3 - 42	2.6e-25	Ribosomal L29e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06680 AT3G06680 AT3G06680 AT3G06700 AT3G06700 AT3G06700
fragaria_vesca	FvH4_4g19430
malus_domestica	MD16G1157600.v1.1
prunus_persica	Prupe.1G122500_v2.0.a1 Prupe.1G122500_v2.0.a1
pyrus_communis	pycom13g13420 pycom16g13260
rosa_chinensis	RchiOBHm_Chr4g0424471
rosa_multiflora	Rmu_sc0002603.1_g000002 Rmu_sc0003567.1_g000006
rosa_roxburghii	Rroxscaffold_5G00366410
rosa_rugosa	Rorug02G0465500 Rorug04G0198000
rosa_samantha	Rh4BG259500
rosa_wichuraiana	Rw4G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	78
AciI	CCGC	2 cut(s)	40, 82
AclWI	GGATC	2 cut(s)	101, 114
AcoI	YGGCCR	2 cut(s)	3, 174
AfiI	CCNNNNNNNGG	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	2 cut(s)	101, 114
AoxI	GGCC	3 cut(s)	3, 45, 174
AspS9I	GGNCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	78
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	3 cut(s)	80, 108, 125
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	96, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	96, 177
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	5, 47, 176
BshNI	GGYRCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	5, 47, 176
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	40, 82
BspANI	GGCC	3 cut(s)	5, 47, 176
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	80, 108, 125
BspPI	GGATC	2 cut(s)	101, 114
BspT107I	GGYRCC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	96, 177
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	106
BstXI	CCANNNNNNTGG	2 cut(s)	56, 103
BstYI	RGATCY	1 cut(s)	106
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	5, 47, 176
BtsCI	GGATG	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	46
CviJI	RGCY	5 cut(s)	5, 26, 47, 70, 176
CviKI_1	RGCY	5 cut(s)	5, 26, 47, 70, 176
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	2 cut(s)	3, 174
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaiI	YATR	1 cut(s)	135
FaqI	GGGAC	1 cut(s)	22
FauI	CCCGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	5, 47, 176
HinfI	GANTC	2 cut(s)	16, 170
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	37, 47, 86, 124, 140, 151
LweI	GCATC	1 cut(s)	69
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	69, 114, 123, 172
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	106
NlaIV	GGNNCC	3 cut(s)	80, 108, 125
PfeI	GAWTC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	80, 108, 125
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	2 cut(s)	28, 134
SfaNI	GCATC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	54
SsiI	CCGC	2 cut(s)	40, 82
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.