Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Forward (+)

2126312 .. 2127467

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTAGATCCCACCGAGAAAGTAATCGATTCAGAATCAATGGAAAGCAAACTCACATCAGTAGATGCGATCGAAGAACACAGCAGCAGTAGCAGTAATGAAGCTATCAGCAACGAGAAGAAGAGTTGTGCCATTTGTGGTACCAGCAAAACCCCTCTTTGGCGAGGCGGTCCTGCCGGTCCCAAGTCGCTTTGTAACGCATGCGGGATCAGAAACAGAAAGAAAAGAAGAACACTGATCTCAAATAGATCAGAAGATAAGAAGAAGAAGAGTCATAACAGAAACCCGAAGTTTGGTGACTCGTTGAAGCAGCGATTAATGGAATTGGGGAGAGAAGTGATGATGCAGCGATCAACGGCTGAGAATCAACGGCGGAATAAGCTTGGCGAAGAAGAGCAAGCCGCCGTGTTACTCATGGCTCTCTCTTATGCTTCTTCCGTTTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

149

Amino Acids

16.56

Weight (kDa)

9.48

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	43 - 77	5.8e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	4 cut(s)	168, 204, 373, 402
AclWI	GGATC	2 cut(s)	2, 215
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	159, 293
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	2 cut(s)	104, 382
AluI	AGCT	2 cut(s)	104, 382
AlwI	GGATC	2 cut(s)	2, 215
ApeKI	GCWGC	3 cut(s)	84, 310, 346
AseI	ATTAAT	1 cut(s)	317
Asp718I	GGTACC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	170, 179
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	170, 179
BanI	GGYRCC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	96, 322, 358
BceAI	ACGGC	3 cut(s)	372, 386, 389
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	4 cut(s)	85, 311, 347, 402
BlsI	GCNGC	4 cut(s)	86, 312, 348, 403
Bme18I	GGWCC	2 cut(s)	170, 179
BmgT120I	GGNCC	2 cut(s)	170, 179
BmiI	GGNNCC	2 cut(s)	142, 181
BmsI	GCATC	2 cut(s)	55, 333
Bsa29I	ATCGAT	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 293
Bse118I	RCCGGY	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	159, 293
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	96, 322, 358
Bsh1285I	CGRYCG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	159, 293
BsmFI	GGGAC	1 cut(s)	165
Bsp143I	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
BspACI	CCGC	4 cut(s)	168, 204, 373, 402
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	142, 181
BspPI	GGATC	2 cut(s)	2, 215
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
Bst6I	CTCTTC	3 cut(s)	116, 263, 387
BstC8I	GCNNGC	2 cut(s)	202, 399
BstDEI	CTNAG	1 cut(s)	360
BstKTI	GATC	6 cut(s)	10, 72, 210, 240, 251, 353
BstMBI	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 379
BstNSI	RCATGY	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	96, 322, 358
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	202, 399
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	170, 179
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	2 cut(s)	201, 415
CviJI	RGCY	5 cut(s)	104, 359, 382, 401, 419
CviKI_1	RGCY	5 cut(s)	104, 359, 382, 401, 419
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	6 cut(s)	9, 71, 209, 239, 250, 352
DpnII	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
Eam1104I	CTCTTC	3 cut(s)	116, 263, 387
EarI	CTCTTC	3 cut(s)	116, 263, 387
EciI	GGCGGA	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	170, 179
FaeI	CATG	2 cut(s)	204, 418
FaiI	YATR	5 cut(s)	202, 276, 416, 429, 444
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	2 cut(s)	200, 414
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	4 cut(s)	85, 311, 347, 402
Fsp4HI	GCNGC	4 cut(s)	85, 311, 347, 402
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	4 cut(s)	85, 311, 347, 402
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	204, 418
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	5 cut(s)	29, 35, 271, 299, 364
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	34, 212, 253
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 379
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	204, 418
KpnI	GGTACC	1 cut(s)	144
Kzo9I	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
LguI	GCTCTTC	1 cut(s)	387
LpnPI	CCDG	3 cut(s)	157, 186, 190
Lsp1109I	GCAGC	3 cut(s)	96, 322, 358
LweI	GCATC	2 cut(s)	55, 333
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	194, 296, 408
MalI	GATC	6 cut(s)	9, 71, 209, 239, 250, 352
MboI	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	280, 293
MnlI	CCTC	2 cut(s)	158, 165
MseI	TTAA	2 cut(s)	317, 448
MspI	CCGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	90, 379
NdeII	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
NlaIII	CATG	2 cut(s)	204, 418
NlaIV	GGNNCC	2 cut(s)	142, 181
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	29, 35, 364
PkrI	GCNGC	4 cut(s)	86, 312, 348, 403
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	2 cut(s)	279, 293
PpsI	GAGTC	2 cut(s)	279, 293
PshBI	ATTAAT	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	142, 181
PspPI	GGNCC	2 cut(s)	170, 179
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	72
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	317, 448
SatI	GCNGC	4 cut(s)	85, 311, 347, 402
Sau3AI	GATC	6 cut(s)	7, 69, 207, 237, 248, 350
Sau96I	GGNCC	2 cut(s)	170, 179
SchI	GAGTC	2 cut(s)	280, 293
SetI	ASST	2 cut(s)	106, 384
SfaNI	GCATC	2 cut(s)	55, 333
SinI	GGWCC	2 cut(s)	170, 179
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	4 cut(s)	168, 204, 373, 402
SspMI	CTAG	1 cut(s)	5
TaqI	TCGA	2 cut(s)	27, 72
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	3 cut(s)	29, 35, 364
Tru1I	TTAA	2 cut(s)	317, 448
Tru9I	TTAA	2 cut(s)	317, 448
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	3 cut(s)	84, 310, 346
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	240
VpaK11BI	GGWCC	2 cut(s)	170, 179
VspI	ATTAAT	1 cut(s)	317
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.