Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Reverse (-)

22949341 .. 22949986

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTGGATCCGTGTGAAAAGCTGAGTGATCAGGGATCAGAGTCGGAGGACATGAACATGATCAAAAACCCAAATGAAGGCTCATCGGAAGAAGGCCAGAAGAGGACTTGCTTCGATTGCGGCACCTCCAAAACCCCTTTGTGGAGAGGCGGTCCGGCCGGCCCTAAGTCGCTTTGCAATGCCTGCGGGATCAGAAGCCGGAAGAAGAGGAGGGCTATTTTGGGTATAAACAAAACCGGGCCAAGTGGTGGTGGAAACAGCAGCGCAGATGAAAATCGAAAGGGGAAGAAGAGCAGTAACAACAAGCAGCTCGGCGACGGCTTGAAACAGAGGCTATTGGCACTTGGGAGAGAGGTGTTGATGCAGAGATCAACGGTGGAGAGGCAACGGAGGAAGTTGGGCGAAGAAGAACAAGCGGCTGTTCTACTGATGGCTCTGTCTTATGGCTCTGTATCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

154

Amino Acids

16.51

Weight (kDa)

9.56

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	37 - 71	2.1e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	4 cut(s)	120, 150, 186, 416
AclWI	GGATC	4 cut(s)	2, 15, 43, 197
AcoI	YGGCCR	1 cut(s)	156
AfiI	CCNNNNNNNGG	3 cut(s)	77, 141, 248
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	2 cut(s)	22, 310
AluI	AGCT	2 cut(s)	22, 310
AlwI	GGATC	4 cut(s)	2, 15, 43, 197
AoxI	GGCC	4 cut(s)	94, 156, 160, 239
ApeKI	GCWGC	2 cut(s)	261, 307
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	152, 161, 239
AsuC2I	CCSGG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	273, 319
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	334
BclI	TGATCA	2 cut(s)	28, 60
BcnI	CCSGG	1 cut(s)	238
BisI	GCNGC	4 cut(s)	121, 262, 308, 417
BlsI	GCNGC	4 cut(s)	122, 263, 309, 418
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	152, 161, 239
BmiI	GGNNCC	2 cut(s)	9, 124
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 141, 248
Bse118I	RCCGGY	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	77, 141, 248
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	273, 319
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	96, 158, 162, 241
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	155, 159, 199, 237
BslI	CCNNNNNNNGG	3 cut(s)	77, 141, 248
BsnI	GGCC	4 cut(s)	96, 158, 162, 241
Bsp143I	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
BspACI	CCGC	4 cut(s)	120, 150, 186, 416
BspANI	GGCC	4 cut(s)	96, 158, 162, 241
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	9, 124
BspPI	GGATC	4 cut(s)	2, 15, 43, 197
BspQI	GCTCTTC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	3 cut(s)	95, 200, 284
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	160, 184
BstDEI	CTNAG	2 cut(s)	23, 165
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	6 cut(s)	10, 31, 38, 63, 192, 371
BstMBI	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 183
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	273, 319
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	96, 158, 162, 241
Cac8I	GCNNGC	2 cut(s)	160, 184
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	152, 161, 239
CpoI	CGGWCCG	1 cut(s)	152
CspI	CGGWCCG	1 cut(s)	152
CviAII	CATG	2 cut(s)	52, 58
DdeI	CTNAG	2 cut(s)	23, 165
DpnI	GATC	6 cut(s)	9, 30, 37, 62, 191, 370
DpnII	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	3 cut(s)	95, 200, 284
EarI	CTCTTC	3 cut(s)	95, 200, 284
EclXI	CGGCCG	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	152
Eco52I	CGGCCG	1 cut(s)	156
FaeI	CATG	2 cut(s)	55, 61
FaiI	YATR	4 cut(s)	53, 59, 227, 444
FatI	CATG	2 cut(s)	51, 57
FauI	CCCGC	1 cut(s)	179
FbaI	TGATCA	2 cut(s)	28, 60
Fnu4HI	GCNGC	4 cut(s)	121, 262, 308, 417
FseI	GGCCGGCC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	121, 262, 308, 417
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	121, 262, 308, 417
HaeIII	GGCC	4 cut(s)	96, 158, 162, 241
HapII	CCGG	4 cut(s)	155, 159, 199, 237
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	55, 61
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	4 cut(s)	155, 159, 199, 237
Hpy188I	TCNGA	4 cut(s)	40, 46, 88, 194
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	71, 86
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	177, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 183
HpyF3I	CTNAG	2 cut(s)	23, 165
Hsp92II	CATG	2 cut(s)	55, 61
HspAI	GCGC	1 cut(s)	264
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	2 cut(s)	28, 60
Kzo9I	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
LguI	GCTCTTC	1 cut(s)	284
LpnPI	CCDG	7 cut(s)	17, 110, 168, 172, 196, 212, 250
Lsp1109I	GCAGC	2 cut(s)	273, 319
LweI	GCATC	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	6 cut(s)	9, 30, 37, 62, 191, 370
MboI	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
MboII	GAAGA	8 cut(s)	101, 112, 214, 217, 298, 301, 416, 419
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	158
MseI	TTAA	1 cut(s)	460
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	4 cut(s)	155, 159, 199, 237
MspR9I	CCNGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	117, 183
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	55, 61
NlaIV	GGNNCC	2 cut(s)	9, 124
NmeAIII	GCCGAG	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	284
PdiI	GCCGGC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	122, 263, 309, 418
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	9, 124
PspPI	GGNCC	3 cut(s)	152, 161, 239
PsuI	RGATCY	1 cut(s)	7
RigI	GGCCGGCC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	56
Rsr2I	CGGWCCG	1 cut(s)	152
RsrII	CGGWCCG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	4 cut(s)	121, 262, 308, 417
Sau3AI	GATC	6 cut(s)	7, 28, 35, 60, 189, 368
Sau96I	GGNCC	3 cut(s)	152, 161, 239
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	4 cut(s)	24, 128, 312, 357
SfaNI	GCATC	1 cut(s)	351
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	56
SsiI	CCGC	4 cut(s)	120, 150, 186, 416
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	114, 277
TauI	GCSGC	2 cut(s)	123, 419
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TseI	GCWGC	2 cut(s)	261, 307
TspDTI	ATGAA	3 cut(s)	68, 90, 285
TspGWI	ACGGA	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.