Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Reverse (-)

19984626 .. 19985788

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTAGATCACAGTGAAAAGGTCTTATTGGTTGATTCAGAAACCATGAAAACAAGAGCTGAAGATATGATCGAACAGAACAACACTAGTGTTAACGACAAGAAGAAGACTTGTGCTGATTGTGGAACCAGTAAAACTCCTCTTTGGCGTGGTGGTCCTGTTGGTCCAAAGTCGTTGTGTAACGCGTGTGGGATCAGAAACAGAAAGAAGAGAAGAGGAGGAACAGAAGATAATAAGAAATTAAAGAAATCGAGTTCTGGCGGCGGAAACCGTAAATTTGGTGAATCGTTAAAACAGAGTTTGATGGATTTGGGGATAAGGAAGAGATCAACGGTGGAGAAGCAACGACAGAAGCTTGGTGAAGAAGAACAAGCCGCTGTGTTACTCATGGCTCTTTCTTATGGCTCTGTTTACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

139

Amino Acids

15.32

Weight (kDa)

9.69

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	38 - 72	5.3e-17	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	185
AciI	CCGC	3 cut(s)	261, 264, 375
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	183
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	2 cut(s)	59, 355
AluI	AGCT	2 cut(s)	59, 355
AlwI	GGATC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	155, 164
AsuHPI	GGTGA	2 cut(s)	293, 371
AvaII	GGWCC	2 cut(s)	155, 164
BbsI	GAAGAC	1 cut(s)	113
BccI	CCATC	1 cut(s)	298
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	2 cut(s)	5, 87
BisI	GCNGC	2 cut(s)	262, 375
BlsI	GCNGC	2 cut(s)	263, 376
Bme18I	GGWCC	2 cut(s)	155, 164
BmgT120I	GGNCC	2 cut(s)	155, 164
BmiI	GGNNCC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	2 cut(s)	129, 231
Bsh1236I	CGCG	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	7, 69, 192, 326
BspACI	CCGC	3 cut(s)	261, 264, 375
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	7, 69, 192, 326
Bst4CI	ACNGT	3 cut(s)	14, 272, 334
Bst6I	CTCTTC	3 cut(s)	203, 208, 317
BstDEI	CTNAG	1 cut(s)	417
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	4 cut(s)	10, 72, 195, 329
BstMBI	GATC	4 cut(s)	7, 69, 192, 326
BstUI	CGCG	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	155, 164
CviAII	CATG	2 cut(s)	46, 388
CviJI	RGCY	5 cut(s)	59, 355, 374, 392, 405
CviKI_1	RGCY	5 cut(s)	59, 355, 374, 392, 405
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	4 cut(s)	9, 71, 194, 328
DpnII	GATC	4 cut(s)	7, 69, 192, 326
Eam1104I	CTCTTC	3 cut(s)	203, 208, 317
EarI	CTCTTC	3 cut(s)	203, 208, 317
EciI	GGCGGA	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	155, 164
Eco57I	CTGAAG	1 cut(s)	81
FaeI	CATG	2 cut(s)	49, 391
FaiI	YATR	4 cut(s)	47, 68, 389, 402
FatI	CATG	2 cut(s)	45, 387
Fnu4HI	GCNGC	2 cut(s)	262, 375
Fsp4HI	GCNGC	2 cut(s)	262, 375
FspBI	CTAG	2 cut(s)	5, 87
GluI	GCNGC	2 cut(s)	262, 375
Hin1II	CATG	2 cut(s)	49, 391
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	2 cut(s)	35, 284
HpaI	GTTAAC	1 cut(s)	94
HphI	GGTGA	2 cut(s)	293, 371
Hpy166II	GTNNAC	2 cut(s)	94, 412
Hpy188I	TCNGA	2 cut(s)	40, 197
Hpy8I	GTNNAC	2 cut(s)	94, 412
HpyCH4III	ACNGT	3 cut(s)	14, 272, 334
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	49, 391
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	7, 69, 192, 326
LpnPI	CCDG	3 cut(s)	142, 171, 243
MaeI	CTAG	2 cut(s)	5, 87
MaeIII	GTNAC	2 cut(s)	179, 381
MalI	GATC	4 cut(s)	9, 71, 194, 328
MboI	GATC	4 cut(s)	7, 69, 192, 326
MboII	GAAGA	9 cut(s)	74, 115, 118, 220, 225, 239, 334, 374, 377
MluCI	AATT	2 cut(s)	239, 275
MluI	ACGCGT	1 cut(s)	183
MnlI	CCTC	3 cut(s)	150, 209, 212
MseI	TTAA	3 cut(s)	93, 242, 290
MspA1I	CMGCKG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	185
NdeII	GATC	4 cut(s)	7, 69, 192, 326
NlaIII	CATG	2 cut(s)	49, 391
NlaIV	GGNNCC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	35, 284
PkrI	GCNGC	2 cut(s)	263, 376
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	155, 164
SaqAI	TTAA	3 cut(s)	93, 242, 290
SatI	GCNGC	2 cut(s)	262, 375
Sau3AI	GATC	4 cut(s)	7, 69, 192, 326
Sau96I	GGNCC	2 cut(s)	155, 164
SetI	ASST	3 cut(s)	24, 61, 357
SinI	GGWCC	2 cut(s)	155, 164
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	2 cut(s)	239, 275
SsiI	CCGC	3 cut(s)	261, 264, 375
SspMI	CTAG	2 cut(s)	5, 87
TaaI	ACNGT	3 cut(s)	14, 272, 334
TaqI	TCGA	2 cut(s)	72, 251
TasI	AATT	2 cut(s)	239, 275
TauI	GCSGC	2 cut(s)	264, 377
TfiI	GAWTC	2 cut(s)	35, 284
Tru1I	TTAA	3 cut(s)	93, 242, 290
Tru9I	TTAA	3 cut(s)	93, 242, 290
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	155, 164
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	2 cut(s)	5, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.