Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Reverse (-)

46661354 .. 46663398

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG251800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGGATCCGTGCGATAAGCTGAGTGATCAGGGATCAGAGTCGGAGGACATGAACATCATCAAACACCCAAATGAAGGCTCATCGGAGGAAGGCCAGAAGAGGACATGCTTCGATTGCGGCACCTCCAAAACCCCTTTGTGGAGAGGCGGTCCAGCCGGCCCTAAGGTGACTCTCAACCCCCCAAAAAACCCTAATTATTTTTTTTCAAAATTTGTTTCTGGGTTTCTGATCTGTGATCTCTGTTTGTGTTTACAGTCGCTATGCAATGCGTGCGGGATCAGAAGCCGGAAGAAGAGGAGGGCCATTTTGGGCATAAACAAAAGCGGGGCTGGCGGCGGCGGCGGTAGCGGCAGCGCAGATGAAAATCGAAAGGGGAAAAAGAGCAGTAGCAACAAGCAGCTCGGAGACGGCTTGAAACAGAGGCTATTGGCTCTGGGAAGAGAGGTGTTGATGCAGAGATCGACGGTGGAGAGGCAGCGGAGGAAGTTGGGCGAAGAAGAACAAGCGGCTGTGCTACTGATGGCTCTTTCTTATGGCTCTGTATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

184

Amino Acids

19.81

Weight (kDa)

9.37

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	37 - 56	2.1e-06	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AclWI	GGATC	4 cut(s)	2, 15, 43, 287
AcsI	RAATTY	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	77, 141
AgsI	TTSAA	2 cut(s)	210, 418
AluBI	AGCT	2 cut(s)	22, 403
AluI	AGCT	2 cut(s)	22, 403
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	4 cut(s)	2, 15, 43, 287
AoxI	GGCC	3 cut(s)	94, 160, 303
ApeKI	GCWGC	3 cut(s)	354, 400, 478
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	152, 161, 303
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	366, 412, 490
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	402
BisI	GCNGC	9 cut(s)	121, 337, 340, 343, 352, 355, 401, 479, 510
BlsI	GCNGC	9 cut(s)	122, 338, 341, 344, 353, 356, 402, 480, 511
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	152, 161, 303
BmiI	GGNNCC	2 cut(s)	9, 124
BmsI	GCATC	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 141
Bse118I	RCCGGY	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	77, 141
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	366, 412, 490
BshFI	GGCC	3 cut(s)	96, 162, 305
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	159, 289
BslI	CCNNNNNNNGG	2 cut(s)	77, 141
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	96, 162, 305
Bsp143I	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
BspANI	GGCC	3 cut(s)	96, 162, 305
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	9, 124
BspPI	GGATC	4 cut(s)	2, 15, 43, 287
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
Bst4CI	ACNGT	2 cut(s)	258, 469
Bst6I	CTCTTC	3 cut(s)	95, 290, 436
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstC8I	GCNNGC	3 cut(s)	160, 274, 334
BstDEI	CTNAG	3 cut(s)	23, 165, 552
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	7 cut(s)	10, 31, 38, 234, 241, 282, 464
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 273, 333, 342, 348, 351
BstNSI	RCATGY	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	366, 412, 490
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	96, 162, 305
Cac8I	GCNNGC	3 cut(s)	160, 274, 334
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	152, 161, 303
CviAII	CATG	2 cut(s)	52, 108
DdeI	CTNAG	3 cut(s)	23, 165, 552
DpnI	GATC	7 cut(s)	9, 30, 37, 233, 240, 281, 463
DpnII	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
Eam1104I	CTCTTC	3 cut(s)	95, 290, 436
EarI	CTCTTC	3 cut(s)	95, 290, 436
Eco47I	GGWCC	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	2 cut(s)	55, 111
FaiI	YATR	5 cut(s)	53, 109, 265, 317, 537
FatI	CATG	2 cut(s)	51, 107
FauI	CCCGC	2 cut(s)	269, 320
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	9 cut(s)	121, 337, 340, 343, 352, 355, 401, 479, 510
Fsp4HI	GCNGC	9 cut(s)	121, 337, 340, 343, 352, 355, 401, 479, 510
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	9 cut(s)	121, 337, 340, 343, 352, 355, 401, 479, 510
HaeIII	GGCC	3 cut(s)	96, 162, 305
HapII	CCGG	2 cut(s)	159, 289
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	55, 111
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	2 cut(s)	41, 172
HpaII	CCGG	2 cut(s)	159, 289
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	6 cut(s)	40, 46, 88, 231, 284, 407
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	71, 86
HpyCH4III	ACNGT	2 cut(s)	258, 469
HpyCH4V	TGCA	2 cut(s)	267, 457
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 273, 333, 342, 348, 351
HpyF3I	CTNAG	3 cut(s)	23, 165, 552
Hsp92II	CATG	2 cut(s)	55, 111
HspAI	GCGC	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
LpnPI	CCDG	8 cut(s)	17, 110, 168, 172, 207, 302, 318, 422
Lsp1109I	GCAGC	3 cut(s)	366, 412, 490
LweI	GCATC	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	7 cut(s)	9, 30, 37, 233, 240, 281, 463
MboI	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
MboII	GAAGA	6 cut(s)	112, 304, 307, 453, 509, 512
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	2 cut(s)	196, 212
MlyI	GAGTC	2 cut(s)	50, 166
MmeI	TCCRAC	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	2 cut(s)	159, 289
MwoI	GCNNNNNNNGC	6 cut(s)	117, 273, 333, 342, 348, 351
NaeI	GCCGGC	1 cut(s)	160
NdeII	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	55, 111
NlaIV	GGNNCC	2 cut(s)	9, 124
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	160
PkrI	GCNGC	9 cut(s)	122, 338, 341, 344, 353, 356, 402, 480, 511
PleI	GAGTC	2 cut(s)	49, 166
PpsI	GAGTC	2 cut(s)	49, 166
PspN4I	GGNNCC	2 cut(s)	9, 124
PspPI	GGNCC	3 cut(s)	152, 161, 303
PsuI	RGATCY	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	9 cut(s)	121, 337, 340, 343, 352, 355, 401, 479, 510
Sau3AI	GATC	7 cut(s)	7, 28, 35, 231, 238, 279, 461
Sau96I	GGNCC	3 cut(s)	152, 161, 303
SchI	GAGTC	2 cut(s)	50, 166
SetI	ASST	5 cut(s)	24, 128, 171, 405, 450
SfaNI	GCATC	1 cut(s)	444
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	196, 212
TaaI	ACNGT	2 cut(s)	258, 469
TaqI	TCGA	3 cut(s)	114, 370, 464
TasI	AATT	2 cut(s)	196, 212
TauI	GCSGC	6 cut(s)	123, 339, 342, 345, 354, 512
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	354, 400, 478
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	68, 90, 378
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.