Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Reverse (-)

42932224 .. 42934201

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG257400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAACATCATCAAACACCCAAATGAAGGCTCATCGGAAGAAGGCCAGAAGAGGACATGCTTCGATTGCGGCACCTCCAAAACCCCTTTGTGGAGAGGCGGTCCAGCCGGGCCTAAGTCGCTATGCAATGCGTGCGGGATCAGAAGCAGGAAGAAGAGGAGGGCCATTTTGGGCATAAACAAAAGCGGGGCTGGCGGCGGCAGCGGCAGCGCAGATGAAAATCGAAAGGGGAAAAAGAGCAGTAGCAACAAGCAGCTCGGAGACGGCTTGAAACAGAGGCTATTGGCTCTGGGAAGAGAGGTGTTGATGCAGAGATCGACGGTGGAGAGGCAGCGGAGGAAGTTGGGCGAAGAAGAACAAGCGGCTGTGCTACTGATGGCTCTTTCTTATGGCTCTGTATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

135

Amino Acids

14.44

Weight (kDa)

10.25

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	20 - 54	1.7e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AciI	CCGC	9 cut(s)	69, 99, 135, 186, 195, 198, 204, 334, 362
AclWI	GGATC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	26, 90
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	3 cut(s)	43, 110, 162
ApeKI	GCWGC	4 cut(s)	201, 207, 253, 331
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	3 cut(s)	101, 110, 162
AsuC2I	CCSGG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	213, 219, 265, 343
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	255
BisI	GCNGC	9 cut(s)	70, 196, 199, 202, 205, 208, 254, 332, 363
BlsI	GCNGC	9 cut(s)	71, 197, 200, 203, 206, 209, 255, 333, 364
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	3 cut(s)	101, 110, 162
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 90
Bse3DI	GCAATG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	26, 90
BseMI	GCAATG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	4 cut(s)	213, 219, 265, 343
BshFI	GGCC	3 cut(s)	45, 112, 164
BshNI	GGYRCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	26, 90
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	3 cut(s)	45, 112, 164
Bsp143I	GATC	2 cut(s)	138, 314
BspACI	CCGC	9 cut(s)	69, 99, 135, 186, 195, 198, 204, 334, 362
BspANI	GGCC	3 cut(s)	45, 112, 164
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	133
BssMI	GATC	2 cut(s)	138, 314
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	3 cut(s)	44, 149, 289
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	133, 193
BstDEI	CTNAG	2 cut(s)	114, 405
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	141, 317
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	138, 314
BstMWI	GCNNNNNNNGC	7 cut(s)	66, 118, 132, 192, 201, 204, 207
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	107
BstV1I	GCAGC	4 cut(s)	213, 219, 265, 343
BsuRI	GGCC	3 cut(s)	45, 112, 164
Cac8I	GCNNGC	2 cut(s)	133, 193
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	101, 110, 162
CviAII	CATG	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	114, 405
DpnI	GATC	2 cut(s)	140, 316
DpnII	GATC	2 cut(s)	138, 314
Eam1104I	CTCTTC	3 cut(s)	44, 149, 289
EarI	CTCTTC	3 cut(s)	44, 149, 289
Eco47I	GGWCC	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	1 cut(s)	60
FaiI	YATR	4 cut(s)	58, 124, 176, 390
FatI	CATG	1 cut(s)	56
FauI	CCCGC	2 cut(s)	128, 179
Fnu4HI	GCNGC	9 cut(s)	70, 196, 199, 202, 205, 208, 254, 332, 363
Fsp4HI	GCNGC	9 cut(s)	70, 196, 199, 202, 205, 208, 254, 332, 363
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	9 cut(s)	70, 196, 199, 202, 205, 208, 254, 332, 363
HaeIII	GGCC	3 cut(s)	45, 112, 164
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	37, 143, 260
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	20, 35
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	126, 310
HpyF10VI	GCNNNNNNNGC	7 cut(s)	66, 118, 132, 192, 201, 204, 207
HpyF3I	CTNAG	2 cut(s)	114, 405
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	138, 314
LpnPI	CCDG	6 cut(s)	59, 117, 121, 133, 177, 275
Lsp1109I	GCAGC	4 cut(s)	213, 219, 265, 343
LweI	GCATC	1 cut(s)	297
MalI	GATC	2 cut(s)	140, 316
MboI	GATC	2 cut(s)	138, 314
MboII	GAAGA	7 cut(s)	50, 61, 163, 166, 306, 362, 365
MnlI	CCTC	9 cut(s)	45, 85, 89, 150, 153, 270, 292, 321, 330
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	2 cut(s)	204, 334
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	7 cut(s)	66, 118, 132, 192, 201, 204, 207
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	138, 314
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	60
PkrI	GCNGC	9 cut(s)	71, 197, 200, 203, 206, 209, 255, 333, 364
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	3 cut(s)	101, 110, 162
RseI	CAYNNNNRTG	1 cut(s)	21
SatI	GCNGC	9 cut(s)	70, 196, 199, 202, 205, 208, 254, 332, 363
Sau3AI	GATC	2 cut(s)	138, 314
Sau96I	GGNCC	3 cut(s)	101, 110, 162
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	3 cut(s)	77, 258, 303
SfaNI	GCATC	1 cut(s)	297
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	21
SsiI	CCGC	9 cut(s)	69, 99, 135, 186, 195, 198, 204, 334, 362
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	63, 223, 317
TauI	GCSGC	5 cut(s)	72, 198, 201, 207, 365
TseI	GCWGC	4 cut(s)	201, 207, 253, 331
TspDTI	ATGAA	3 cut(s)	17, 39, 231
VpaK11BI	GGWCC	1 cut(s)	101
XceI	RCATGY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.