Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Forward (+)

9922785 .. 9924146

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G126000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTGGATCCAAGCGATAAAGGATCGGAGTCCGAGGAGATGAATATCAAAACCCCAGATGTGGGTTCATCCGAAGAAGGCCATAAGAAGACCTGTGCCGACTGCGGAACCTCCAAAACTCCTTTATGGAGGGGAGGCCCAGCAGGACCTAAGTCGCTATGCAATGCGTGCGGGATCAGAAGCAGGAAGAAGAGAAGGGCCATTCTGGGCTTGAACAAAGAAAACCCCAATGATAAAAAGGGCAAGAGAAACAAGCAGCTAGGCGATGGTTTGAAGCAGAGGCTATTGGCTCTGGGAAGAGAGGTTTTGATGCAGAGATCGACGGTGGAGAGGCAGAGGAGGAAGCTAGGGGAAGAAGAACAAGCGGCTGTGCTACTGATGGCTCTTTCATATGGCTCTGTCTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

137

Amino Acids

14.91

Weight (kDa)

9.69

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	105, 171, 365
AclWI	GGATC	4 cut(s)	2, 15, 31, 182
AfiI	CCNNNNNNNGG	2 cut(s)	61, 62
AgsI	TTSAA	2 cut(s)	214, 274
AluBI	AGCT	2 cut(s)	259, 346
AluI	AGCT	2 cut(s)	259, 346
AlwI	GGATC	4 cut(s)	2, 15, 31, 182
AoxI	GGCC	3 cut(s)	79, 136, 198
ApeKI	GCWGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	137, 146, 198
AvaII	GGWCC	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	260, 373
BfaI	CTAG	2 cut(s)	260, 347
BisI	GCNGC	2 cut(s)	257, 366
BlsI	GCNGC	2 cut(s)	258, 367
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	137, 146, 198
BmiI	GGNNCC	2 cut(s)	9, 109
BmsI	GCATC	1 cut(s)	300
BoxI	GACNNNNGTC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 62
Bse3DI	GCAATG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	61, 62
BseMI	GCAATG	1 cut(s)	169
BseRI	GAGGAG	2 cut(s)	50, 352
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	139
BshFI	GGCC	3 cut(s)	81, 138, 200
BslI	CCNNNNNNNGG	2 cut(s)	61, 62
BsnI	GGCC	3 cut(s)	81, 138, 200
Bsp143I	GATC	4 cut(s)	7, 23, 174, 317
BspACI	CCGC	3 cut(s)	105, 171, 365
BspANI	GGCC	3 cut(s)	81, 138, 200
BspLI	GGNNCC	2 cut(s)	9, 109
BspPI	GGATC	4 cut(s)	2, 15, 31, 182
BsrDI	GCAATG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	7, 23, 174, 317
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	185, 292
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	150, 408
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	4 cut(s)	10, 26, 177, 320
BstMBI	GATC	4 cut(s)	7, 23, 174, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstPAI	GACNNNNGTC	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	81, 138, 200
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	137, 146, 198
DdeI	CTNAG	2 cut(s)	150, 408
DpnI	GATC	4 cut(s)	9, 25, 176, 319
DpnII	GATC	4 cut(s)	7, 23, 174, 317
Eam1104I	CTCTTC	2 cut(s)	185, 292
EarI	CTCTTC	2 cut(s)	185, 292
Eco47I	GGWCC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	146
FaiI	YATR	6 cut(s)	84, 127, 160, 391, 393, 405
FauI	CCCGC	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	257, 366
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	257, 366
FspBI	CTAG	2 cut(s)	260, 347
GluI	GCNGC	2 cut(s)	257, 366
GsaI	CCCAGC	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	81, 138, 200
HinfI	GANTC	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	28, 34, 73, 179
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	71, 189
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	162, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	150, 408
Kzo9I	GATC	4 cut(s)	7, 23, 174, 317
LpnPI	CCDG	7 cut(s)	69, 106, 129, 153, 169, 191, 278
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	2 cut(s)	260, 347
MalI	GATC	4 cut(s)	9, 25, 176, 319
MboI	GATC	4 cut(s)	7, 23, 174, 317
MboII	GAAGA	7 cut(s)	86, 100, 199, 202, 309, 365, 368
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	28, 121, 123, 128, 273, 295, 324, 330, 333
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	4 cut(s)	7, 23, 174, 317
NlaIV	GGNNCC	2 cut(s)	9, 109
PkrI	GCNGC	2 cut(s)	258, 367
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	9, 109
PspPI	GGNCC	3 cut(s)	137, 146, 198
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	7
SatI	GCNGC	2 cut(s)	257, 366
Sau3AI	GATC	4 cut(s)	7, 23, 174, 317
Sau96I	GGNCC	3 cut(s)	137, 146, 198
SchI	GAGTC	1 cut(s)	38
SetI	ASST	6 cut(s)	95, 113, 151, 261, 306, 348
SfaNI	GCATC	1 cut(s)	300
SinI	GGWCC	1 cut(s)	146
SsiI	CCGC	3 cut(s)	105, 171, 365
SspMI	CTAG	2 cut(s)	260, 347
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	320
TauI	GCSGC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	56, 57, 378
VpaK11BI	GGWCC	1 cut(s)	146
XspI	CTAG	2 cut(s)	260, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.