Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Reverse (-)

48036498 .. 48037925

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTGGATCCGTGCGATAAGCTGAGTGATCAGGGATCAGAGTCGGAGGACATGAACATCATCAAACACCCAAATGAAGGCTCATCGGAAGAAGGCCAGAAGAGGACATGCTTCGATTGCGGCACCTCCAAAACCCCTTTGTGGAGAGGCGGTCCAGCCGGGCCTAAGTCGCTATGCAATGCGTGCGGGATCAGAAGCCGGAAGAAGAGGAGGGCCATTTTGGGCATAAACAAAAGCGGGGCTGGCGGCGGCGGTAGCGGCAGCGCAGATGAAAATCGAAAGGGGAAGAAGAGCAGTAGCAACAGGCAGCTCGGAGACGGCTTGAAACAGAGGCTATTGGCTCTGGGGAGAGAGGTGTTGATGCAGAGATCGACGGTGGAGAGGCAGCGGAGGAAGTTGGGCGAAGAAGAACAAGCGGCTGTGCTACTGATGGCTCTTTCTTATGGCTCTGTATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

153

Amino Acids

16.38

Weight (kDa)

9.6

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	37 - 71	2.1e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AclWI	GGATC	4 cut(s)	2, 15, 43, 197
AfiI	CCNNNNNNNGG	2 cut(s)	77, 141
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	2 cut(s)	22, 310
AluI	AGCT	2 cut(s)	22, 310
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	4 cut(s)	2, 15, 43, 197
AoxI	GGCC	3 cut(s)	94, 161, 213
ApeKI	GCWGC	3 cut(s)	261, 307, 385
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	152, 161, 213
AsuC2I	CCSGG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	273, 319, 397
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	334
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	309
BisI	GCNGC	8 cut(s)	121, 247, 250, 259, 262, 308, 386, 417
BlsI	GCNGC	8 cut(s)	122, 248, 251, 260, 263, 309, 387, 418
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	152, 161, 213
BmiI	GGNNCC	2 cut(s)	9, 124
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 141
Bse3DI	GCAATG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	77, 141
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	273, 319, 397
BshFI	GGCC	3 cut(s)	96, 163, 215
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	159, 199
BslI	CCNNNNNNNGG	2 cut(s)	77, 141
BsmAI	GTCTC	1 cut(s)	309
BsmBI	CGTCTC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	96, 163, 215
Bsp143I	GATC	5 cut(s)	7, 28, 35, 189, 368
BspANI	GGCC	3 cut(s)	96, 163, 215
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	9, 124
BspPI	GGATC	4 cut(s)	2, 15, 43, 197
BspQI	GCTCTTC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	184
BssMI	GATC	5 cut(s)	7, 28, 35, 189, 368
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	3 cut(s)	95, 200, 284
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	184, 244
BstDEI	CTNAG	3 cut(s)	23, 165, 459
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	5 cut(s)	10, 31, 38, 192, 371
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	5 cut(s)	7, 28, 35, 189, 368
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 169, 183, 243, 255, 258
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	273, 319, 397
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	96, 163, 215
Cac8I	GCNNGC	2 cut(s)	184, 244
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	152, 161, 213
CviAII	CATG	2 cut(s)	52, 108
DdeI	CTNAG	3 cut(s)	23, 165, 459
DpnI	GATC	5 cut(s)	9, 30, 37, 191, 370
DpnII	GATC	5 cut(s)	7, 28, 35, 189, 368
Eam1104I	CTCTTC	3 cut(s)	95, 200, 284
EarI	CTCTTC	3 cut(s)	95, 200, 284
Eco47I	GGWCC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	2 cut(s)	55, 111
FaiI	YATR	5 cut(s)	53, 109, 175, 227, 444
FatI	CATG	2 cut(s)	51, 107
FauI	CCCGC	2 cut(s)	179, 230
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	8 cut(s)	121, 247, 250, 259, 262, 308, 386, 417
Fsp4HI	GCNGC	8 cut(s)	121, 247, 250, 259, 262, 308, 386, 417
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	8 cut(s)	121, 247, 250, 259, 262, 308, 386, 417
HaeIII	GGCC	3 cut(s)	96, 163, 215
HapII	CCGG	2 cut(s)	159, 199
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	55, 111
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	159, 199
Hpy188I	TCNGA	5 cut(s)	40, 46, 88, 194, 314
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	71, 86
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	177, 364
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 169, 183, 243, 255, 258
HpyF3I	CTNAG	3 cut(s)	23, 165, 459
Hsp92II	CATG	2 cut(s)	55, 111
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	7, 28, 35, 189, 368
LguI	GCTCTTC	1 cut(s)	284
LpnPI	CCDG	8 cut(s)	17, 110, 168, 172, 212, 228, 289, 329
Lsp1109I	GCAGC	3 cut(s)	273, 319, 397
LweI	GCATC	1 cut(s)	351
MalI	GATC	5 cut(s)	9, 30, 37, 191, 370
MboI	GATC	5 cut(s)	7, 28, 35, 189, 368
MboII	GAAGA	8 cut(s)	101, 112, 214, 217, 298, 301, 416, 419
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	159, 199
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	6 cut(s)	117, 169, 183, 243, 255, 258
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	5 cut(s)	7, 28, 35, 189, 368
NlaIII	CATG	2 cut(s)	55, 111
NlaIV	GGNNCC	2 cut(s)	9, 124
NspI	RCATGY	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	122, 248, 251, 260, 263, 309, 387, 418
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	9, 124
PspPI	GGNCC	3 cut(s)	152, 161, 213
PsuI	RGATCY	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	284
SatI	GCNGC	8 cut(s)	121, 247, 250, 259, 262, 308, 386, 417
Sau3AI	GATC	5 cut(s)	7, 28, 35, 189, 368
Sau96I	GGNCC	3 cut(s)	152, 161, 213
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	4 cut(s)	24, 128, 312, 357
SfaNI	GCATC	1 cut(s)	351
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	3 cut(s)	114, 277, 371
TauI	GCSGC	5 cut(s)	123, 249, 252, 261, 419
TseI	GCWGC	3 cut(s)	261, 307, 385
TspDTI	ATGAA	3 cut(s)	68, 90, 285
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.