Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Forward (+)

9617686 .. 9618276

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g13580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTGGATCCAAGCGATAAAGGATCGGAGTCGGAGGGAATGACTATAAAAACCCCAGATGCCGGGTCATCGGAGGAAGGCTTTAAGAAGACCTGCGCCGATTGCGGAACCTCCAAAACCCCCCTGTGGAGAGGCGGTCCGGCGGGCCCCAAGTCGCTATGCAATGCGTGCGGGATCAGAAGCAGGAAGAAGAGGAGGGCTATTTTGGGATTAAACAAAGAAAACCCCAACGATAAAAAGGGCAAGAAGAACAAGCAGCTCGGAGACGGCTTGAAGCAGCGGCTGTTGGCTCTGGGAAGAGAGGTTTTGATTCAGCGATCGACGGTGGAGAGGCAGCGGAGGAAGCTCGGCGAGGAAGAACAAGCGGCGGTGCTTCTCATGGCACTCTCATATGGCTCTGTCTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

137

Amino Acids

14.76

Weight (kDa)

9.76

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	32 - 66	1.3e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
AciI	CCGC	8 cut(s)	105, 135, 143, 171, 280, 337, 365, 368
AclWI	GGATC	4 cut(s)	2, 15, 31, 182
AfiI	CCNNNNNNNGG	2 cut(s)	62, 126
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	2 cut(s)	259, 346
AluI	AGCT	2 cut(s)	259, 346
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	4 cut(s)	2, 15, 31, 182
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	145
ApaI	GGGCCC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	256, 277, 334
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	3 cut(s)	137, 145, 146
AsuC2I	CCSGG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	268, 289, 346
BceAI	ACGGC	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	5 cut(s)	257, 278, 281, 335, 366
BlsI	GCNGC	5 cut(s)	258, 279, 282, 336, 367
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	137, 145, 146
BmiI	GGNNCC	4 cut(s)	9, 109, 147, 148
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 126
Bse3DI	GCAATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	62, 126
BseMI	GCAATG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	268, 289, 346
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	63, 140
BslI	CCNNNNNNNGG	2 cut(s)	62, 126
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	147
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	7, 23, 174, 317
BspACI	CCGC	8 cut(s)	105, 135, 143, 171, 280, 337, 365, 368
BspANI	GGCC	1 cut(s)	147
BspLI	GGNNCC	4 cut(s)	9, 109, 147, 148
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	4 cut(s)	2, 15, 31, 182
BsrDI	GCAATG	1 cut(s)	169
BssMI	GATC	4 cut(s)	7, 23, 174, 317
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	185, 292
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	145, 169
BstDEI	CTNAG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	4 cut(s)	10, 26, 177, 320
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	4 cut(s)	7, 23, 174, 317
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 168, 343
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	268, 289, 346
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	145, 169
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	137, 145, 146
CpoI	CGGWCCG	1 cut(s)	137
CspI	CGGWCCG	1 cut(s)	137
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	9 cut(s)	81, 147, 200, 259, 270, 283, 290, 346, 396
CviKI_1	RGCY	9 cut(s)	81, 147, 200, 259, 270, 283, 290, 346, 396
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	4 cut(s)	9, 25, 176, 319
DpnII	GATC	4 cut(s)	7, 23, 174, 317
Eam1104I	CTCTTC	2 cut(s)	185, 292
EarI	CTCTTC	2 cut(s)	185, 292
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	1 cut(s)	382
FaiI	YATR	6 cut(s)	47, 160, 380, 391, 393, 405
FatI	CATG	1 cut(s)	378
FauI	CCCGC	2 cut(s)	136, 164
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	257, 278, 281, 335, 366
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	5 cut(s)	257, 278, 281, 335, 366
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	5 cut(s)	257, 278, 281, 335, 366
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	63, 140
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	29, 310
HpaII	CCGG	2 cut(s)	63, 140
Hpy188I	TCNGA	5 cut(s)	28, 34, 73, 179, 263
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 168, 343
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	7, 23, 174, 317
LpnPI	CCDG	7 cut(s)	69, 76, 106, 137, 153, 169, 278
Lsp1109I	GCAGC	3 cut(s)	268, 289, 346
LweI	GCATC	1 cut(s)	49
MalI	GATC	4 cut(s)	9, 25, 176, 319
MboI	GATC	4 cut(s)	7, 23, 174, 317
MboII	GAAGA	6 cut(s)	100, 199, 202, 259, 309, 368
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	12
MseI	TTAA	2 cut(s)	84, 212
MspA1I	CMGCKG	2 cut(s)	280, 337
MspI	CCGG	2 cut(s)	63, 140
MspR9I	CCNGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	102, 168, 343
NciI	CCSGG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	4 cut(s)	7, 23, 174, 317
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	4 cut(s)	9, 109, 147, 148
NmeAIII	GCCGAG	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	258, 279, 282, 336, 367
Ple19I	CGATCG	1 cut(s)	320
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	4 cut(s)	9, 109, 147, 148
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	3 cut(s)	137, 145, 146
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	320
Rsr2I	CGGWCCG	1 cut(s)	137
RsrII	CGGWCCG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	84, 212
SatI	GCNGC	5 cut(s)	257, 278, 281, 335, 366
Sau3AI	GATC	4 cut(s)	7, 23, 174, 317
Sau96I	GGNCC	3 cut(s)	137, 145, 146
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	5 cut(s)	95, 113, 261, 306, 348
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	1 cut(s)	137
SsiI	CCGC	8 cut(s)	105, 135, 143, 171, 280, 337, 365, 368
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	320
TauI	GCSGC	2 cut(s)	283, 368
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	84, 212
Tru9I	TTAA	2 cut(s)	84, 212
TseI	GCWGC	3 cut(s)	256, 277, 334
VpaK11BI	GGWCC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.