Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Forward (+)

17523584 .. 17524880

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGCCCTTTTTGTTGATTCCGCCAAACCCCTTTTGGCGGGTTGGATCAAATTGTGGTGTTTTCTGTAAGCAGGGCCATTCCCGTCATTTCCCAACTCACAGGGCTAGGGGATCAGAGTCGGAGGACATGAACATGATCAAACACCCAAATGAAGGCTCATCGGAAGAAGGCCAGAAGAGGACATGCTTCGATTGCGGCACCTCCAAAACCCCTTTGTGGAGAGGCGGTCCAGCCGGGCCTAAGTCGCTATGCAATGCGTGCGGGATCAGAAGCAGGAAGAAGAGGAGGGCCATTTTGGGCATAAACAAAAGCGGTGCTGGCGGCGGCGGCAGCGGCAGCGGCAGCGCAGATGAAAATCGAAAGGGGAAAAAGAGCAGTAGCAACAAGCAGCTCGGAGACGGCTTGAAACAGAGGCTATTGGCTCTGGGAAGAGAGGTGTTGATGCAGAGATCGACGGTGGAGAGGCAGCGGAGGAAGTTGGGCGAAGAAGAACAGGCGGCTGTGCTACTGATGGCTCTCTCTTATGGCTCTGTATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

182

Amino Acids

19.51

Weight (kDa)

10.19

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	63 - 97	2.8e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 200
AclWI	GGATC	3 cut(s)	55, 121, 275
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	39, 155, 219
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	3 cut(s)	55, 121, 275
AoxI	GGCC	4 cut(s)	76, 172, 239, 291
ApeKI	GCWGC	5 cut(s)	333, 339, 345, 391, 469
AspLEI	GCGC	2 cut(s)	7, 350
AspS9I	GGNCC	4 cut(s)	76, 230, 239, 291
AsuC2I	CCSGG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	4, 200
BbvI	GCAGC	5 cut(s)	345, 351, 357, 403, 481
BccI	CCATC	1 cut(s)	508
BceAI	ACGGC	1 cut(s)	418
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	4 cut(s)	76, 230, 239, 291
BmiI	GGNNCC	2 cut(s)	6, 202
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 155, 219
Bse3DI	GCAATG	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	357
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	3 cut(s)	39, 155, 219
BseMI	GCAATG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	5 cut(s)	345, 351, 357, 403, 481
BshFI	GGCC	4 cut(s)	78, 174, 241, 293
BshNI	GGYRCC	2 cut(s)	4, 200
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	39, 155, 219
BsmAI	GTCTC	1 cut(s)	393
BsmBI	CGTCTC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	78, 174, 241, 293
Bsp143I	GATC	5 cut(s)	47, 113, 138, 267, 452
BspANI	GGCC	4 cut(s)	78, 174, 241, 293
BspLI	GGNNCC	2 cut(s)	6, 202
BspPI	GGATC	3 cut(s)	55, 121, 275
BspT107I	GGYRCC	2 cut(s)	4, 200
BsrDI	GCAATG	1 cut(s)	262
BssMI	GATC	5 cut(s)	47, 113, 138, 267, 452
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	3 cut(s)	173, 278, 427
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	262, 322
BstDEI	CTNAG	2 cut(s)	243, 543
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 350
BstKTI	GATC	5 cut(s)	50, 116, 141, 270, 455
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	5 cut(s)	47, 113, 138, 267, 452
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	5 cut(s)	345, 351, 357, 403, 481
BsuRI	GGCC	4 cut(s)	78, 174, 241, 293
Cac8I	GCNNGC	2 cut(s)	262, 322
CfoI	GCGC	2 cut(s)	7, 350
Cfr13I	GGNCC	4 cut(s)	76, 230, 239, 291
CviAII	CATG	3 cut(s)	130, 136, 186
DdeI	CTNAG	2 cut(s)	243, 543
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	49, 115, 140, 269, 454
DpnII	GATC	5 cut(s)	47, 113, 138, 267, 452
Eam1104I	CTCTTC	3 cut(s)	173, 278, 427
EarI	CTCTTC	3 cut(s)	173, 278, 427
EciI	GGCGGA	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	230
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	3 cut(s)	133, 139, 189
FaiI	YATR	6 cut(s)	131, 137, 187, 253, 305, 528
FatI	CATG	3 cut(s)	129, 135, 185
FauI	CCCGC	2 cut(s)	33, 257
FbaI	TGATCA	1 cut(s)	138
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	6, 349
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	78, 174, 241, 293
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	7, 350
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	133, 139, 189
Hin6I	GCGC	2 cut(s)	5, 348
HinP1I	GCGC	2 cut(s)	5, 348
HinfI	GANTC	2 cut(s)	19, 119
HpaII	CCGG	1 cut(s)	237
Hpy188I	TCNGA	5 cut(s)	118, 124, 166, 272, 398
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	149, 164
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	2 cut(s)	255, 448
HpyF3I	CTNAG	2 cut(s)	243, 543
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	133, 139, 189
HspAI	GCGC	2 cut(s)	5, 348
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	5 cut(s)	47, 113, 138, 267, 452
LpnPI	CCDG	9 cut(s)	59, 88, 188, 246, 250, 262, 306, 413, 482
Lsp1109I	GCAGC	5 cut(s)	345, 351, 357, 403, 481
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	108
MalI	GATC	5 cut(s)	49, 115, 140, 269, 454
MboI	GATC	5 cut(s)	47, 113, 138, 267, 452
MboII	GAAGA	7 cut(s)	179, 190, 292, 295, 444, 500, 503
MluCI	AATT	1 cut(s)	52
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	25, 102
MslI	CAYNNNNRTG	2 cut(s)	134, 150
MspA1I	CMGCKG	3 cut(s)	336, 342, 472
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	238
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	5 cut(s)	47, 113, 138, 267, 452
NlaIII	CATG	3 cut(s)	133, 139, 189
NlaIV	GGNNCC	2 cut(s)	6, 202
NspI	RCATGY	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	127
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	6, 202
PspPI	GGNCC	4 cut(s)	76, 230, 239, 291
RseI	CAYNNNNRTG	2 cut(s)	134, 150
Sau3AI	GATC	5 cut(s)	47, 113, 138, 267, 452
Sau96I	GGNCC	4 cut(s)	76, 230, 239, 291
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	3 cut(s)	206, 396, 441
SfaNI	GCATC	1 cut(s)	435
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	134, 150
Sse9I	AATT	1 cut(s)	52
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	192, 361, 455
TasI	AATT	1 cut(s)	52
TauI	GCSGC	7 cut(s)	201, 327, 330, 333, 339, 345, 503
TfiI	GAWTC	1 cut(s)	19
TseI	GCWGC	5 cut(s)	333, 339, 345, 391, 469
TspDTI	ATGAA	3 cut(s)	146, 168, 369
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.