Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Forward (+)

33888277 .. 33890722

Gene Structure 2446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0194600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGTCATATTTAAATTTTTGGGACAATGATAAAAGAGACCTTCCTCGACTTCTCCGACTCGCCGCCCTTCACCATCGATCTCTCCTTCGAGTGGATCCTCGACTCCGTGACTCCGACACCGATCAGATCAAGCTCATTGATCGCACCCTGCAGTTGGGATCGGTGCTCCTCGAGGCCGGTAAGAGCTCGGCGAGACGACAAGCCTCCAAGCACAACTCCATCTCCTGGGCTCTCCCTCTCGACCTCACCATCAAGGGATGTGATGGGTCAGTTTTGCTTGATGGATCAGCGAGTGGTCCAAGTGAGCAGGAGGCACCTCCAAACCTGAGTTTGAGGGCCACGGCCTTCGAAATCATCAATGACCTCCGTGAGCTAGCTCATAGCAAATGTGGGAGGTTTTTGTCAAGTGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAACGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTCATTTATGTGTCTGTAGTCAATCAAACAAAATGGTGGTTCGCAAAGCGTTTCTTACATCCTGATATAGTTGATCAATATAGTCGCATTCTTCTACGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGGCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGACAGAGGTGAACTACATGGAGAAACTTTCGAAAGAGGAGGGGATTCAGAAGAAACTCAGCAAGGATATTTTGCAATATAAAGCTCATATAATCAAGATATTTGCGGAACATAGGCACAATTGGATCTCTGCAGATTTAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

276

Amino Acids

31.86

Weight (kDa)

6.76

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	83 - 136	8e-07	Peroxidase
DUF707	PF05212	124 - 241	1.1e-50	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	2 cut(s)	66, 788
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	5 cut(s)	92, 105, 169, 295, 815
AcsI	RAATTY	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	94, 157, 228
AgsI	TTSAA	3 cut(s)	470, 610, 653
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	5 cut(s)	136, 189, 376, 380, 767
AluI	AGCT	5 cut(s)	136, 189, 376, 380, 767
Alw21I	GWGCWC	2 cut(s)	171, 191
Alw26I	GTCTC	2 cut(s)	33, 190
AlwI	GGATC	5 cut(s)	92, 105, 169, 295, 815
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	177, 339, 345
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	299, 339, 589
AsuHPI	GGTGA	3 cut(s)	65, 241, 703
AsuII	TTCGAA	3 cut(s)	351, 637, 713
AsuNHI	GCTAGC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	299, 589
BamHI	GGATCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	191, 235
Bbv12I	GWGCWC	2 cut(s)	171, 191
BccI	CCATC	6 cut(s)	84, 230, 260, 260, 278, 434
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	33, 190
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	3 cut(s)	152, 498, 813
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	2 cut(s)	299, 589
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	299, 339, 589
BmiI	GGNNCC	2 cut(s)	99, 318
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	414
BmtI	GCTAGC	1 cut(s)	380
Bpu14I	TTCGAA	3 cut(s)	351, 637, 713
Bsa29I	ATCGAT	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	228, 342, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 157, 228
Bse118I	RCCGGY	2 cut(s)	179, 664
BseBI	CCWGG	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	228, 342, 592
BseGI	GGATG	3 cut(s)	266, 541, 589
BseLI	CCNNNNNNNGG	3 cut(s)	94, 157, 228
BseMII	CTCAG	2 cut(s)	320, 754
BseRI	GAGGAG	2 cut(s)	161, 734
BshFI	GGCC	3 cut(s)	179, 341, 347
BshNI	GGYRCC	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	171, 191
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	180, 665
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	94, 157, 228
BsmAI	GTCTC	2 cut(s)	33, 190
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	3 cut(s)	179, 341, 347
Bso31I	GGTCTC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	173
Bsp119I	TTCGAA	3 cut(s)	351, 637, 713
Bsp1286I	GDGCHC	3 cut(s)	171, 191, 235
BspACI	CCGC	2 cut(s)	66, 788
BspANI	GGCC	3 cut(s)	179, 341, 347
BspCNI	CTCAG	2 cut(s)	321, 753
BspDI	ATCGAT	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	99, 318
BspMAI	CTGCAG	2 cut(s)	156, 817
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	5 cut(s)	92, 105, 169, 295, 815
BspT104I	TTCGAA	3 cut(s)	351, 637, 713
BspT107I	GGYRCC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	2 cut(s)	179, 664
BssAI	RCCGGY	2 cut(s)	179, 664
BssECI	CCNNGG	3 cut(s)	228, 342, 592
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	3 cut(s)	351, 637, 713
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	329, 740
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	266, 541, 589
BstMAI	GTCTC	2 cut(s)	33, 190
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	3 cut(s)	152, 498, 813
BstX2I	RGATCY	2 cut(s)	97, 807
BstYI	RGATCY	2 cut(s)	97, 807
Bsu15I	ATCGAT	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	179, 341, 347
BsuTUI	ATCGAT	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	266, 541, 589
Cac8I	GCNNGC	1 cut(s)	378
Cfr10I	RCCGGY	2 cut(s)	179, 664
Cfr13I	GGNCC	3 cut(s)	299, 339, 589
ClaI	ATCGAT	1 cut(s)	79
CviAII	CATG	1 cut(s)	700
DdeI	CTNAG	2 cut(s)	329, 740
DraI	TTTAAA	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	592
Eco24I	GRGCYC	2 cut(s)	191, 235
Eco31I	GGTCTC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	299, 589
Eco53kI	GAGCTC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	191, 235
ErhI	CCWWGG	1 cut(s)	592
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	1 cut(s)	703
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	699
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	3 cut(s)	273, 528, 596
FriOI	GRGCYC	2 cut(s)	191, 235
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	179, 341, 347
HapII	CCGG	2 cut(s)	180, 665
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	4 cut(s)	60, 105, 113, 727
HpaII	CCGG	2 cut(s)	180, 665
HphI	GGTGA	3 cut(s)	65, 241, 703
Hpy166II	GTNNAC	2 cut(s)	601, 694
Hpy188I	TCNGA	4 cut(s)	59, 118, 129, 732
Hpy188III	TCNNGA	3 cut(s)	242, 545, 778
Hpy8I	GTNNAC	2 cut(s)	601, 694
HpyAV	CCTTC	5 cut(s)	53, 80, 98, 358, 638
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	154, 757, 815
HpyF3I	CTNAG	2 cut(s)	329, 740
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	556
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	8 cut(s)	164, 193, 214, 241, 296, 341, 558, 678
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	110, 443
MboII	GAAGA	2 cut(s)	566, 745
MfeI	CAATTG	1 cut(s)	802
MflI	RGATCY	2 cut(s)	97, 807
MhlI	GDGCHC	3 cut(s)	171, 191, 235
MluCI	AATT	4 cut(s)	16, 464, 604, 802
MlyI	GAGTC	3 cut(s)	54, 99, 107
MmeI	TCCRAC	2 cut(s)	82, 141
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	2 cut(s)	438, 491
MspI	CCGG	2 cut(s)	180, 665
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	802
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	229
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	1 cut(s)	703
NlaIV	GGNNCC	2 cut(s)	99, 318
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	110
NspV	TTCGAA	3 cut(s)	351, 637, 713
PaeR7I	CTCGAG	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	727
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	3 cut(s)	54, 99, 107
PpsI	GAGTC	3 cut(s)	54, 99, 107
PpuMI	RGGWCCY	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	191
Psp1406I	AACGTT	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	99, 318
PspPI	GGNCC	3 cut(s)	299, 339, 589
PspPPI	RGGWCCY	1 cut(s)	589
PspXI	VCTCGAGB	1 cut(s)	173
PstI	CTGCAG	2 cut(s)	156, 817
PsuI	RGATCY	2 cut(s)	97, 807
RseI	CAYNNNNRTG	2 cut(s)	438, 491
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	1 cut(s)	66
Sau96I	GGNCC	3 cut(s)	299, 339, 589
SchI	GAGTC	3 cut(s)	54, 99, 107
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	3 cut(s)	171, 191, 235
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	3 cut(s)	152, 498, 813
Sfr274I	CTCGAG	1 cut(s)	173
SfuI	TTCGAA	3 cut(s)	351, 637, 713
SinI	GGWCC	2 cut(s)	299, 589
SlaI	CTCGAG	1 cut(s)	173
SmiI	ATTTAAAT	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	438, 491
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	16, 464, 604, 802
SsiI	CCGC	2 cut(s)	66, 788
SspMI	CTAG	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	592
SwaI	ATTTAAAT	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	621
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	9 cut(s)	49, 79, 91, 103, 174, 243, 351, 637, 713
TasI	AATT	4 cut(s)	16, 464, 604, 802
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	2 cut(s)	98, 359
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	299, 589
XapI	RAATTY	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.