AT3G07090

PPPDE putative peptidase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008469
Physical Location & Seq
Reverse (-)
2242998 .. 2244828
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07090.2

Sequence Viewer

Length: 798 bp
ATGGCTGAGGAAGCGCATAAGGTAACATTGAATGTCTATGATTTAAGCCAAGGCTTGGCACGCCAGCTCTCACAATCACTCCTGGGAAAGGTTATTGAAGGTGTATGGCATACAGGAATAGTTGTCTATGGGAATGAGTACTTTTTTGGAGGAGGGATACAACATTTACCAGTTGGAAGAACTCCATATGGAACACCAATTCGAACGATAGAGTTGGGTCTATCACATGTGCCTAAAGATGTATTCGAGATGTACTTGGAAGAAATCAGTCCTCGTTACACTGCTGAATCCTACAATTTACTTACTCACAACTGCAACAACTTCAGCAACGAGGTCGCTCAGTTTTTGGTGGGTAAAGGGATTCCTGACTACATTCTCCAGCTTCCTAATGATGTTCTAAACAGTCCCATGGGTGGTCTTATAATGCCTATGTTGCAAGGCCTCGAAACAACTCTAAAGGCTGGTGCTGTTCCTCAAGTTCCACAGTTTAGGCCACAGCCACAACCTTTTGGAGCTTTTAGTAAAGATGATGGCCCACAAATTGTGATAGCTCCTAAGCTCGAGGCAGCAGAAACCTCAACTGCAACTGAGAAAGTGCCACCTGTTATTCAACCATCAGCTAGTAAAGAGAAGGTCAAGGACGACCCGTTGGGTGATGCTAGGGCCAAGATTCAGGAAGAGATTACAAGCGAATTTGCAGCTCTAATGGCACAAGGCACATTACGAGCAAGTGAAGCAGCTGCTATGGCGACAAAAAGAGTCATGCAAAAGTACGGACATCTCAATGTAAACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

265

Amino Acids

28.85

Weight (kDa)

5.55

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 6 - 145 8.2e-49 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 55
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 3 cut(s) 140, 254, 773
AfiI CCNNNNNNNGG 3 cut(s) 55, 88, 413
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 3 cut(s) 31, 98, 611
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 8 cut(s) 67, 382, 515, 551, 559, 620, 701, 740
AluI AGCT 8 cut(s) 67, 382, 515, 551, 559, 620, 701, 740
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 4 cut(s) 439, 491, 532, 663
ApeKI GCWGC 4 cut(s) 566, 698, 737, 740
ApoI RAATTY 1 cut(s) 692
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 533, 663
AsuHPI GGTGA 1 cut(s) 665
AsuII TTCGAA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 560
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 578, 710, 727, 749
BccI CCATC 2 cut(s) 524, 622
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 150
BfaI CTAG 2 cut(s) 621, 660
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 4 cut(s) 567, 699, 738, 741
BlsI GCNGC 4 cut(s) 568, 700, 739, 742
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 533, 663
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 646
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 2 cut(s) 6, 555
Bpu14I TTCGAA 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 459
BsaJI CCNNGG 3 cut(s) 49, 82, 408
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 88, 413
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 49, 82, 408
BseLI CCNNNNNNNGG 3 cut(s) 55, 88, 413
BseMII CTCAG 2 cut(s) 353, 579
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 4 cut(s) 578, 710, 727, 749
BshFI GGCC 4 cut(s) 441, 493, 534, 665
BsiHKCI CYCGRG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 3 cut(s) 55, 88, 413
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 4 cut(s) 441, 493, 534, 665
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 202
Bsp19I CCATGG 1 cut(s) 408
BspANI GGCC 4 cut(s) 441, 493, 534, 665
BspCNI CTCAG 2 cut(s) 352, 580
BspT104I TTCGAA 1 cut(s) 202
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 49, 82, 408
BssT1I CCWWGG 2 cut(s) 49, 408
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 404, 486
Bst6I CTCTTC 1 cut(s) 672
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 61, 65
BstDEI CTNAG 5 cut(s) 6, 339, 555, 588, 795
BstDSI CCRYGG 1 cut(s) 408
BstENI CCTNNNNNAGG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 16
BstMWI GCNNNNNNNGC 6 cut(s) 11, 60, 433, 707, 734, 746
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 578, 710, 727, 749
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 4 cut(s) 441, 493, 534, 665
BtgI CCRYGG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 61, 65
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 533, 663
Csp6I GTAC 3 cut(s) 139, 253, 772
CviAII CATG 3 cut(s) 227, 409, 763
CviQI GTAC 3 cut(s) 139, 253, 772
DdeI CTNAG 5 cut(s) 6, 339, 555, 588, 795
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 49, 408
Eco147I AGGCCT 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 49, 408
ErhI CCWWGG 2 cut(s) 49, 408
FaeI CATG 3 cut(s) 230, 412, 766
FaqI GGGAC 1 cut(s) 390
FatI CATG 3 cut(s) 226, 408, 762
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 567, 699, 738, 741
Fsp4HI GCNGC 4 cut(s) 567, 699, 738, 741
FspBI CTAG 2 cut(s) 621, 660
GlaI GCGC 1 cut(s) 15
GluI GCNGC 4 cut(s) 567, 699, 738, 741
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 4 cut(s) 441, 493, 534, 665
HhaI GCGC 1 cut(s) 16
Hin1II CATG 3 cut(s) 230, 412, 766
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 4 cut(s) 287, 361, 670, 759
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 1 cut(s) 790
Hpy188III TCNNGA 3 cut(s) 247, 365, 674
Hpy8I GTNNAC 1 cut(s) 790
HpyAV CCTTC 2 cut(s) 92, 625
HpyCH4III ACNGT 2 cut(s) 404, 486
HpyCH4V TGCA 5 cut(s) 315, 436, 584, 698, 766
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 60, 433, 707, 734, 746
HpyF3I CTNAG 5 cut(s) 6, 339, 555, 588, 795
Hsp92II CATG 3 cut(s) 230, 412, 766
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 512, 556
Lsp1109I GCAGC 4 cut(s) 578, 710, 727, 749
LweI GCATC 1 cut(s) 646
MaeI CTAG 2 cut(s) 621, 660
MaeIII GTNAC 2 cut(s) 22, 275
MboII GAAGA 3 cut(s) 189, 272, 689
MluCI AATT 4 cut(s) 198, 295, 540, 692
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 8 cut(s) 143, 146, 282, 325, 452, 483, 556, 586
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 783
MspA1I CMGCKG 1 cut(s) 740
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 6 cut(s) 11, 60, 433, 707, 734, 746
NcoI CCATGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 187
NlaIII CATG 3 cut(s) 230, 412, 766
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 560
PceI AGGCCT 1 cut(s) 441
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 3 cut(s) 287, 361, 670
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 4 cut(s) 568, 700, 739, 742
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
PscI ACATGT 1 cut(s) 226
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 2 cut(s) 533, 663
PspXI VCTCGAGB 1 cut(s) 560
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 3 cut(s) 140, 254, 773
RsaNI GTAC 3 cut(s) 139, 253, 772
RseI CAYNNNNRTG 1 cut(s) 783
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 4 cut(s) 567, 699, 738, 741
Sau96I GGNCC 2 cut(s) 533, 663
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 1 cut(s) 83
SfaNI GCATC 1 cut(s) 646
Sfr274I CTCGAG 1 cut(s) 560
SfuI TTCGAA 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 2 cut(s) 474, 560
SmoI CTYRAG 2 cut(s) 474, 560
Sse9I AATT 4 cut(s) 198, 295, 540, 692
SseBI AGGCCT 1 cut(s) 441
SspMI CTAG 2 cut(s) 621, 660
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 49, 408
TaaI ACNGT 2 cut(s) 404, 486
TaqI TCGA 4 cut(s) 202, 246, 444, 561
TasI AATT 4 cut(s) 198, 295, 540, 692
TatI WGTACW 2 cut(s) 138, 252
TfiI GAWTC 3 cut(s) 287, 361, 670
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 286
TseI GCWGC 4 cut(s) 566, 698, 737, 740
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 692
XceI RCATGY 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 560
XspI CTAG 2 cut(s) 621, 660
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.