Prupe.8G203600_v2.0.a1

Desumoylating isopeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0008469
Physical Location & Seq
Forward (+)
19137559 .. 19140101
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G203600.3

Sequence Viewer

Length: 816 bp
ATGGCCGAGGAGGGTCACAAGGTCACTTTGAATGTATATGATCTAAGCCAAGGACTAGCTAGGCAGATGTCCATGGCTTTCTTGGGGAAAGCCATCGAGGGCATATGGCACACAGGAGTTGTGGTTTATGGTAATGAGTACTATTTTGGGGGAGGAATCCAGCATGCTTCTGCTGGATCGACACCATATGGGACACCAATACGTGTGGTAGAATTGGGTGTCACACATGTGCCCAAGGATGTATTTGAGATGTATTTGCAGGAAATCAGTCCCCGGTATACTGCTGAAACCTATAGTTTACTTAATCACAATTGCAACAACTTTAGCAATGAGGTTGCTCAGTTTTTGGTGGGTGCAACCGTTCCAGACTATATTCTGGAGCTCCCTAATGAAGTTATGGGCAGTCCAATGGGTGCTCTTATTTTGCCCATGATACAGAATTTGGAAGCAACACTGAAAAGTGGTGCTGCTCCTCAAGCTCCACAATTCAGGCCCCCTGTGGTTCAACCAACAACGAATGTCATGAAACCCTTGAGTAGTAGTTCTAACACCGAGGTTGGTGCTAAATCGAAATCTGGAGGGCAGCAGCTCACCAAGTCGGAGGAACGGGGAACATCACAGAGTGCTGTCAAACCTGCCAATGGGGTTGTAGATCCTCTTGGGGACGCTCGAAGTAAGGTGCAAGAGGAAATCTCTGCTGAATTTGCTGCAATCATGGCAAGTGGAACACTCCGTGCAAGCGAGGCTGCAGCACTTGCAACAAGAAGAGTGATGCAGAGATATGGTCATGAAAGTTCAACGGTGTCGCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

272

Amino Acids

29.0

Weight (kDa)

5.71

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 643
AccI GTMKAC 1 cut(s) 278
AclWI GGATC 2 cut(s) 184, 647
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 439, 701
AdeI CACNNNGTG 2 cut(s) 623, 734
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 641
AflIII ACRYGT 2 cut(s) 202, 226
AgsI TTSAA 3 cut(s) 31, 506, 798
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 4 cut(s) 59, 382, 479, 589
AluI AGCT 4 cut(s) 59, 382, 479, 589
Alw21I GWGCWC 2 cut(s) 384, 418
AlwI GGATC 2 cut(s) 184, 647
AoxI GGCC 2 cut(s) 3, 491
ApeKI GCWGC 6 cut(s) 467, 583, 586, 707, 746, 749
ApoI RAATTY 2 cut(s) 439, 701
AspS9I GGNCC 1 cut(s) 492
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 583
BaeGI GKGCMC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 384, 418
BbvI GCAGC 6 cut(s) 454, 595, 598, 694, 733, 761
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BcnI CCSGG 1 cut(s) 274
BfaI CTAG 2 cut(s) 56, 60
BfmI CTRYAG 2 cut(s) 292, 747
BfuAI ACCTGC 1 cut(s) 643
BisI GCNGC 6 cut(s) 468, 584, 587, 708, 747, 750
BlsI GCNGC 6 cut(s) 469, 585, 588, 709, 748, 751
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 762
BplI GAGNNNNNCTC 2 cut(s) 677, 709
BpmI CTGGAG 2 cut(s) 398, 597
BpuEI CTTGAG 2 cut(s) 459, 553
BpuMI CCSGG 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 203
BsaJI CCNNGG 6 cut(s) 6, 49, 72, 234, 272, 552
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse3DI GCAATG 1 cut(s) 334
BseDI CCNNGG 6 cut(s) 6, 49, 72, 234, 272, 552
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 23, 462
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 6 cut(s) 454, 595, 598, 694, 733, 761
BshFI GGCC 2 cut(s) 5, 493
BsiHKAI GWGCWC 2 cut(s) 384, 418
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 3 cut(s) 205, 255, 677
BslI CCNNNNNNNGG 1 cut(s) 641
BsmFI GGGAC 3 cut(s) 205, 255, 677
BsnI GGCC 2 cut(s) 5, 493
Bsp1286I GDGCHC 3 cut(s) 234, 384, 418
Bsp143I GATC 3 cut(s) 40, 176, 652
Bsp19I CCATGG 1 cut(s) 72
BspANI GGCC 2 cut(s) 5, 493
BspCNI CTCAG 1 cut(s) 352
BspHI TCATGA 2 cut(s) 522, 787
BspLI GGNNCC 1 cut(s) 494
BspMAI CTGCAG 1 cut(s) 751
BspMI ACCTGC 1 cut(s) 643
BspPI GGATC 2 cut(s) 184, 647
BsrDI GCAATG 1 cut(s) 334
BssECI CCNNGG 6 cut(s) 6, 49, 72, 234, 272, 552
BssMI GATC 3 cut(s) 40, 176, 652
BssNAI GTATAC 1 cut(s) 279
BssT1I CCWWGG 3 cut(s) 49, 72, 234
Bst1107I GTATAC 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 361, 802
Bst6I CTCTTC 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 755
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 165, 739
BstDEI CTNAG 2 cut(s) 44, 339
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 3 cut(s) 43, 179, 655
BstMBI GATC 3 cut(s) 40, 176, 652
BstMWI GCNNNNNNNGC 5 cut(s) 476, 704, 716, 743, 755
BstNSI RCATGY 2 cut(s) 167, 230
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 2 cut(s) 292, 747
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 6 cut(s) 454, 595, 598, 694, 733, 761
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BstZ17I GTATAC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 5, 493
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 452
BveI ACCTGC 1 cut(s) 643
Cac8I GCNNGC 2 cut(s) 165, 739
CciI TCATGA 2 cut(s) 522, 787
Cfr13I GGNCC 1 cut(s) 492
CseI GACGC 1 cut(s) 674
Csp6I GTAC 1 cut(s) 139
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 7 cut(s) 73, 164, 227, 430, 523, 715, 788
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 44, 339
DpnI GATC 3 cut(s) 42, 178, 654
DpnII GATC 3 cut(s) 40, 176, 652
DraIII CACNNNGTG 2 cut(s) 623, 734
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 760
EarI CTCTTC 1 cut(s) 760
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 3 cut(s) 49, 72, 234
Eco24I GRGCYC 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 492
EcoT14I CCWWGG 3 cut(s) 49, 72, 234
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 3 cut(s) 49, 72, 234
FaeI CATG 7 cut(s) 76, 167, 230, 433, 526, 718, 791
FaqI GGGAC 3 cut(s) 205, 255, 677
FatI CATG 7 cut(s) 72, 163, 226, 429, 522, 714, 787
FauNDI CATATG 2 cut(s) 104, 187
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 6 cut(s) 468, 584, 587, 708, 747, 750
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 6 cut(s) 468, 584, 587, 708, 747, 750
FspBI CTAG 2 cut(s) 56, 60
GluI GCNGC 6 cut(s) 468, 584, 587, 708, 747, 750
GsuI CTGGAG 2 cut(s) 398, 597
HaeIII GGCC 2 cut(s) 5, 493
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 674
Hin1II CATG 7 cut(s) 76, 167, 230, 433, 526, 718, 791
HinfI GANTC 1 cut(s) 156
HpaII CCGG 1 cut(s) 274
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 279, 299
Hpy188I TCNGA 1 cut(s) 601
Hpy188III TCNNGA 5 cut(s) 365, 377, 523, 576, 788
Hpy8I GTNNAC 2 cut(s) 279, 299
HpyCH4III ACNGT 2 cut(s) 361, 802
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 9 cut(s) 259, 315, 356, 682, 710, 737, 749, 758, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 704, 716, 743, 755
HpyF3I CTNAG 2 cut(s) 44, 339
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 7 cut(s) 76, 167, 230, 433, 526, 718, 791
Kzo9I GATC 3 cut(s) 40, 176, 652
LmnI GCTCC 4 cut(s) 379, 387, 475, 484
Lsp1109I GCAGC 6 cut(s) 454, 595, 598, 694, 733, 761
LweI GCATC 1 cut(s) 762
MaeI CTAG 2 cut(s) 56, 60
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 3 cut(s) 14, 22, 220
MalI GATC 3 cut(s) 42, 178, 654
MboI GATC 3 cut(s) 40, 176, 652
MboII GAAGA 1 cut(s) 777
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 3 cut(s) 234, 384, 418
MluCI AATT 5 cut(s) 212, 310, 439, 485, 701
MmeI TCCRAC 1 cut(s) 579
MseI TTAA 2 cut(s) 303, 814
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 274
MunI CAATTG 1 cut(s) 310
MwoI GCNNNNNNNGC 5 cut(s) 476, 704, 716, 743, 755
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 1 cut(s) 72
NdeI CATATG 2 cut(s) 104, 187
NdeII GATC 3 cut(s) 40, 176, 652
NlaIII CATG 7 cut(s) 76, 167, 230, 433, 526, 718, 791
NlaIV GGNNCC 1 cut(s) 494
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 14, 22, 220
NspI RCATGY 2 cut(s) 167, 230
OliI CACNNNNGTG 1 cut(s) 227
PaeI GCATGC 1 cut(s) 167
PagI TCATGA 2 cut(s) 522, 787
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 6 cut(s) 469, 585, 588, 709, 748, 751
Ppu21I YACGTR 1 cut(s) 203
PscI ACATGT 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 1 cut(s) 492
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 303, 814
SatI GCNGC 6 cut(s) 468, 584, 587, 708, 747, 750
Sau3AI GATC 3 cut(s) 40, 176, 652
Sau96I GGNCC 1 cut(s) 492
ScaI AGTACT 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 3 cut(s) 234, 384, 418
SfaNI GCATC 1 cut(s) 762
SfcI CTRYAG 2 cut(s) 292, 747
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 474, 532
SmoI CTYRAG 2 cut(s) 474, 532
SphI GCATGC 1 cut(s) 167
Sse9I AATT 5 cut(s) 212, 310, 439, 485, 701
SspMI CTAG 2 cut(s) 56, 60
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 3 cut(s) 49, 72, 234
TaaI ACNGT 2 cut(s) 361, 802
TaiI ACGT 1 cut(s) 205
TaqI TCGA 4 cut(s) 96, 179, 569, 670
TasI AATT 5 cut(s) 212, 310, 439, 485, 701
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 303, 814
Tru9I TTAA 2 cut(s) 303, 814
TscAI CASTG 1 cut(s) 459
TseFI GTSAC 3 cut(s) 14, 22, 220
TseI GCWGC 6 cut(s) 467, 583, 586, 707, 746, 749
Tsp45I GTSAC 3 cut(s) 14, 22, 220
TspDTI ATGAA 3 cut(s) 405, 539, 804
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 1 cut(s) 459
XapI RAATTY 2 cut(s) 439, 701
XceI RCATGY 2 cut(s) 167, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 2 cut(s) 56, 60
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.