Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008469

Physical Location & Seq

Genomic Coordinates Forward (+)

31557577 .. 31562216

Gene Structure 4640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCAGAGGAGGGTCATAGGGTTACTTTGAATGTATATGACCTAAGCCAAGGCCTGGCCAAGCAGATGTCTATGGCATTCATAGGGAAAGCCATTGAGGGTATATGGCATACAGGAGTATCAGTTTATGGCAACGAGTACTATTTTGGGGGAGGCATACAACAAGCTCCTGCGGGATCGACACCGTATGGGACACCACTTCGAGTGGTAGAGTTAGGTGAAACACATATACCCAAGGACGTTTTTGAGTCGTATTTACAGGAGATCAGTCCCCGATATACTGCTGAGACATATAGTCTGCTGACTCACAATTGCAACAACTTTAGCAACGAGGTTGCTCAGTTTCTTGTAGGTGCAACAATACCAGACTATATTCTGCAGCTTCCTACTGAAGTTATGAGCAGTCCAATGGGAGCTCTTATATTGCCTATGATTCAAAATTTGGAAGCGACTTTGAGAAGTGGTGCTGCTCCTCAAGCTCCACAATTCAGGCCTCCTTCAGTAGTCCAGCCAACAGCTAATGTCACAAAACCTAATTCTAGCAATGTGACAGCTGATGGATCGAAGTCTGGAACGCAGCTCACCAAGCCGGAGGAGAATAAAAAGTCAGCAAGCGCTGTCAAACCAAGCAATGGGATTGCAGATCCTCTTGGGGACGCTCGAAGTAAGGTACAAGAGGAGATTGCGGCTGAATTTGCTGCGCTCATGGCAAGTGGGACATTGCGTGCAAGTGAGGCTGCAGCATTGGCCACAAGAAAAGTGATGGAGAGATACGGTCATGTAAACACACAAATGTCACAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

269

Amino Acids

28.7

Weight (kDa)

5.59

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C97	PF05903	6 - 145	1.1e-49	PPPDE putative peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07090 AT3G07090
fragaria_vesca	FvH4_4g33290
malus_domestica	MD05G1176500.v1.1 MD10G1165200.v1.1
prunus_persica	Prupe.8G203600_v2.0.a1 Prupe.8G203600_v2.0.a1 Prupe.8G203600_v2.0.a1
pyrus_communis	pycom10g14250
rosa_chinensis	RchiOBHm_Chr6g0284951
rosa_laevigata	RLG00000012697
rosa_multiflora	Rmu_co8182794.1_g000001 Rmu_sc0004961.1_g000012 Rmu_sc0036899.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183930 Rroxscaffold_7G00184200
rosa_rugosa	Rorug06G0169000 Rorug06G0169100
rosa_samantha	Rh6AG280900 Rh6BG281600 Rh6CG283200 Rh6DG276300
rosa_wichuraiana	Rw6G024140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	55, 632
AciI	CCGC	2 cut(s)	173, 686
AclWI	GGATC	3 cut(s)	184, 568, 638
AcoI	YGGCCR	2 cut(s)	57, 747
AcsI	RAATTY	2 cut(s)	439, 692
AcuI	CTGAAG	2 cut(s)	411, 483
AfaI	GTAC	2 cut(s)	140, 672
AfeI	AGCGCT	1 cut(s)	616
AfiI	CCNNNNNNNGG	2 cut(s)	55, 632
AgsI	TTSAA	2 cut(s)	31, 437
AhdI	GACNNNNNGTC	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	7 cut(s)	167, 382, 416, 479, 518, 554, 580
AluI	AGCT	7 cut(s)	167, 382, 416, 479, 518, 554, 580
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	3 cut(s)	184, 568, 638
Aor51HI	AGCGCT	1 cut(s)	616
AoxI	GGCC	4 cut(s)	52, 57, 491, 747
ApeKI	GCWGC	6 cut(s)	379, 467, 577, 698, 737, 740
ApoI	RAATTY	2 cut(s)	439, 692
AspLEI	GCGC	2 cut(s)	617, 703
AsuHPI	GGTGA	2 cut(s)	230, 574
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BalI	TGGCCA	2 cut(s)	59, 749
BanII	GRGCYC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	6 cut(s)	391, 454, 589, 685, 724, 752
BccI	CCATC	2 cut(s)	551, 757
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	2 cut(s)	377, 738
BfoI	RGCGCY	1 cut(s)	618
BisI	GCNGC	7 cut(s)	380, 468, 578, 687, 699, 738, 741
BlsI	GCNGC	7 cut(s)	381, 469, 579, 688, 700, 739, 742
BmcAI	AGTACT	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	49, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 632
Bse3DI	GCAATG	3 cut(s)	550, 637, 719
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	49, 234
BseLI	CCNNNNNNNGG	2 cut(s)	55, 632
BseMI	GCAATG	3 cut(s)	550, 637, 719
BseMII	CTCAG	2 cut(s)	276, 353
BseRI	GAGGAG	4 cut(s)	23, 462, 608, 692
BseXI	GCAGC	6 cut(s)	391, 454, 589, 685, 724, 752
BshFI	GGCC	4 cut(s)	54, 59, 493, 749
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	4 cut(s)	205, 255, 668, 730
BslI	CCNNNNNNNGG	2 cut(s)	55, 632
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	4 cut(s)	205, 255, 668, 730
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	4 cut(s)	54, 59, 493, 749
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	176, 264, 560, 643
BspACI	CCGC	2 cut(s)	173, 686
BspANI	GGCC	4 cut(s)	54, 59, 493, 749
BspCNI	CTCAG	2 cut(s)	277, 352
BspMAI	CTGCAG	2 cut(s)	381, 742
BspPI	GGATC	3 cut(s)	184, 568, 638
BsrDI	GCAATG	3 cut(s)	550, 637, 719
BssECI	CCNNGG	2 cut(s)	49, 234
BssMI	GATC	4 cut(s)	176, 264, 560, 643
BssT1I	CCWWGG	2 cut(s)	49, 234
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	186, 776
BstC8I	GCNNGC	2 cut(s)	613, 726
BstDEI	CTNAG	3 cut(s)	44, 285, 339
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	2 cut(s)	617, 703
BstKTI	GATC	4 cut(s)	179, 267, 563, 646
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	4 cut(s)	176, 264, 560, 643
BstMWI	GCNNNNNNNGC	6 cut(s)	476, 586, 695, 707, 734, 746
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	377, 738
BstV1I	GCAGC	6 cut(s)	391, 454, 589, 685, 724, 752
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	4 cut(s)	54, 59, 493, 749
Cac8I	GCNNGC	2 cut(s)	613, 726
CfoI	GCGC	2 cut(s)	617, 703
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	139, 671
CviAII	CATG	2 cut(s)	706, 779
CviQI	GTAC	2 cut(s)	139, 671
DdeI	CTNAG	3 cut(s)	44, 285, 339
DpnI	GATC	4 cut(s)	178, 266, 562, 645
DpnII	GATC	4 cut(s)	176, 264, 560, 643
DriI	GACNNNNNGTC	1 cut(s)	294
EaeI	YGGCCR	2 cut(s)	57, 747
Eam1105I	GACNNNNNGTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	49, 234
Eco147I	AGGCCT	2 cut(s)	54, 493
Eco24I	GRGCYC	1 cut(s)	418
Eco47III	AGCGCT	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	416
Eco57I	CTGAAG	2 cut(s)	411, 483
EcoICRI	GAGCTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	49, 234
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	49, 234
FaeI	CATG	2 cut(s)	709, 782
FaqI	GGGAC	4 cut(s)	205, 255, 668, 730
FatI	CATG	2 cut(s)	705, 778
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	7 cut(s)	380, 468, 578, 687, 699, 738, 741
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	7 cut(s)	380, 468, 578, 687, 699, 738, 741
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	2 cut(s)	616, 702
GluI	GCNGC	7 cut(s)	380, 468, 578, 687, 699, 738, 741
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	4 cut(s)	54, 59, 493, 749
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	2 cut(s)	617, 703
Hin1II	CATG	2 cut(s)	709, 782
Hin6I	GCGC	2 cut(s)	615, 701
HinP1I	GCGC	2 cut(s)	615, 701
HinfI	GANTC	3 cut(s)	248, 304, 433
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	2 cut(s)	230, 574
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188III	TCNNGA	1 cut(s)	570
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	1 cut(s)	507
HpyCH4III	ACNGT	2 cut(s)	186, 776
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	6 cut(s)	315, 356, 379, 641, 728, 740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	476, 586, 695, 707, 734, 746
HpyF3I	CTNAG	3 cut(s)	44, 285, 339
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	709, 782
HspAI	GCGC	2 cut(s)	615, 701
Kzo9I	GATC	4 cut(s)	176, 264, 560, 643
LmnI	GCTCC	4 cut(s)	172, 413, 475, 484
Lsp1109I	GCAGC	6 cut(s)	391, 454, 589, 685, 724, 752
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	4 cut(s)	22, 523, 547, 795
MalI	GATC	4 cut(s)	178, 266, 562, 645
MboI	GATC	4 cut(s)	176, 264, 560, 643
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	2 cut(s)	59, 749
MluCI	AATT	5 cut(s)	310, 439, 485, 535, 692
MluNI	TGGCCA	2 cut(s)	59, 749
MlyI	GAGTC	2 cut(s)	257, 298
Mox20I	TGGCCA	2 cut(s)	59, 749
MscI	TGGCCA	2 cut(s)	59, 749
MslI	CAYNNNNRTG	1 cut(s)	791
Msp20I	TGGCCA	2 cut(s)	59, 749
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	6 cut(s)	476, 586, 695, 707, 734, 746
NdeII	GATC	4 cut(s)	176, 264, 560, 643
NlaIII	CATG	2 cut(s)	709, 782
NmuCI	GTSAC	3 cut(s)	523, 547, 795
PceI	AGGCCT	2 cut(s)	54, 493
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	433
PflMI	CCANNNNNTGG	2 cut(s)	55, 632
PkrI	GCNGC	7 cut(s)	381, 469, 579, 688, 700, 739, 742
PleI	GAGTC	2 cut(s)	256, 298
PpsI	GAGTC	2 cut(s)	256, 298
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PstI	CTGCAG	2 cut(s)	381, 742
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	140, 672
RsaNI	GTAC	2 cut(s)	139, 671
RseI	CAYNNNNRTG	1 cut(s)	791
SacI	GAGCTC	1 cut(s)	418
SatI	GCNGC	7 cut(s)	380, 468, 578, 687, 699, 738, 741
Sau3AI	GATC	4 cut(s)	176, 264, 560, 643
ScaI	AGTACT	1 cut(s)	140
SchI	GAGTC	2 cut(s)	257, 298
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	377, 738
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	5 cut(s)	310, 439, 485, 535, 692
SseBI	AGGCCT	2 cut(s)	54, 493
SsiI	CCGC	2 cut(s)	173, 686
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	418
StuI	AGGCCT	2 cut(s)	54, 493
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	49, 234
TaaI	ACNGT	2 cut(s)	186, 776
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	179, 202, 563, 661
TasI	AATT	5 cut(s)	310, 439, 485, 535, 692
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	433
TseFI	GTSAC	3 cut(s)	523, 547, 795
TseI	GCWGC	6 cut(s)	379, 467, 577, 698, 737, 740
Tsp45I	GTSAC	3 cut(s)	523, 547, 795
TspDTI	ATGAA	1 cut(s)	70
Van91I	CCANNNNNTGG	2 cut(s)	55, 632
XapI	RAATTY	2 cut(s)	439, 692
XspI	CTAG	1 cut(s)	540
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.