Rorug06G0169000

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001113
Physical Location & Seq
Reverse (-)
24947283 .. 24949824
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0169000.1

Sequence Viewer

Length: 414 bp
ATGGCTCGCAGAAGCTCAGGAGGTCGATCTGCCCGCCCAGCTCCTCGTCGGGCTCCAGCACCAGCACCAGTTCGTCAGGCTCCTCCCCCGGCTCCTGCACAAAGTGGAAGTGGTGGATCCATGCTTGGAGGGATCGGATCAACCATAGCTCAGGGAATGGCTTTTGGAGGTGGAAGTGCTGTTGCACACAGGGCCGTGGATGCTGTGATGGGTCCTCGCACCATTCAACATGAAACGGTAGCCTCTGAGGCCTCTGCTGCTCCAGCATCCATGGCTAGCTCTGATGCATGCAGTATTCACTCTAAGGCTTTCCAAGATTGTGTCAACAACTTTGGAAGTGAGATCAGCAAGTGCCAGTTCTACATGGATATGCTGTCCGAGTGCAGGAAGAACTCTGGCATGTTGAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

137

Amino Acids

13.85

Weight (kDa)

9.49

Isoelectric Point (pI)

76.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 97 - 131 3.3e-09 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AclWI GGATC 4 cut(s) 111, 124, 140, 145
AdeI CACNNNGTG 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 384
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 4 cut(s) 15, 41, 149, 279
AluI AGCT 4 cut(s) 15, 41, 149, 279
AlwI GGATC 4 cut(s) 111, 124, 140, 145
AoxI GGCC 2 cut(s) 192, 249
ApeKI GCWGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 192, 212
AsuC2I CCSGG 1 cut(s) 89
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 2 cut(s) 276, 412
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 192, 212
BmiI GGNNCC 5 cut(s) 54, 81, 93, 118, 213
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 3 cut(s) 190, 274, 275
BmtI GCTAGC 1 cut(s) 279
BpmI CTGGAG 2 cut(s) 39, 246
Bpu10I CCTNAGC 2 cut(s) 16, 150
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 87, 195, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 68, 355
BseDI CCNNGG 3 cut(s) 87, 195, 270
BseGI GGATG 2 cut(s) 205, 266
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 30, 164, 237
BseNI ACTGG 2 cut(s) 68, 355
BseRI GAGGAG 2 cut(s) 33, 72
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 2 cut(s) 81, 403
BshFI GGCC 2 cut(s) 194, 251
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 384
BsnI GGCC 2 cut(s) 194, 251
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 5 cut(s) 26, 116, 132, 137, 342
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 34
BspANI GGCC 2 cut(s) 194, 251
BspCNI CTCAG 3 cut(s) 29, 163, 238
BspLI GGNNCC 5 cut(s) 54, 81, 93, 118, 213
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 4 cut(s) 111, 124, 140, 145
BsrI ACTGG 2 cut(s) 68, 355
BssECI CCNNGG 3 cut(s) 87, 195, 270
BssMI GATC 5 cut(s) 26, 116, 132, 137, 342
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 4 cut(s) 7, 34, 277, 289
BstDEI CTNAG 4 cut(s) 16, 150, 246, 303
BstDSI CCRYGG 2 cut(s) 195, 270
BstF5I GGATG 2 cut(s) 205, 266
BstKTI GATC 5 cut(s) 29, 119, 135, 140, 345
BstMBI GATC 5 cut(s) 26, 116, 132, 137, 342
BstMWI GCNNNNNNNGC 7 cut(s) 38, 191, 200, 248, 257, 263, 272
BstNSI RCATGY 2 cut(s) 291, 403
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 194, 251
BtgI CCRYGG 2 cut(s) 195, 270
BtsCI GGATG 2 cut(s) 205, 266
Cac8I GCNNGC 4 cut(s) 7, 34, 277, 289
Cfr13I GGNCC 2 cut(s) 192, 212
CviAII CATG 6 cut(s) 121, 230, 271, 288, 364, 400
DdeI CTNAG 4 cut(s) 16, 150, 246, 303
DpnI GATC 5 cut(s) 28, 118, 134, 139, 344
DpnII GATC 5 cut(s) 26, 116, 132, 137, 342
DraIII CACNNNGTG 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 6 cut(s) 124, 233, 274, 291, 367, 403
FaiI YATR 8 cut(s) 122, 146, 231, 272, 289, 365, 371, 401
FatI CATG 6 cut(s) 120, 229, 270, 287, 363, 399
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 212, 253
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 276, 412
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 2 cut(s) 39, 246
HaeIII GGCC 2 cut(s) 194, 251
HapII CCGG 1 cut(s) 89
Hin1II CATG 6 cut(s) 124, 233, 274, 291, 367, 403
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 4 cut(s) 137, 247, 283, 379
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 5 cut(s) 98, 185, 287, 291, 384
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 191, 200, 248, 257, 263, 272
HpyF3I CTNAG 4 cut(s) 16, 150, 246, 303
Hsp92II CATG 6 cut(s) 124, 233, 274, 291, 367, 403
Kzo9I GATC 5 cut(s) 26, 116, 132, 137, 342
LmnI GCTCC 5 cut(s) 46, 58, 85, 97, 265
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 3 cut(s) 190, 274, 275
MaeI CTAG 2 cut(s) 276, 412
MalI GATC 5 cut(s) 28, 118, 134, 139, 344
MboI GATC 5 cut(s) 26, 116, 132, 137, 342
MboII GAAGA 1 cut(s) 400
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 55
MnlI CCTC 9 cut(s) 14, 54, 93, 122, 161, 225, 241, 253, 262
Mph1103I ATGCAT 1 cut(s) 289
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 89
MwoI GCNNNNNNNGC 7 cut(s) 38, 191, 200, 248, 257, 263, 272
NciI CCSGG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 270
NdeII GATC 5 cut(s) 26, 116, 132, 137, 342
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 6 cut(s) 124, 233, 274, 291, 367, 403
NlaIV GGNNCC 5 cut(s) 54, 81, 93, 118, 213
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 2 cut(s) 291, 403
PaeI GCATGC 1 cut(s) 291
PceI AGGCCT 1 cut(s) 251
PkrI GCNGC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 5 cut(s) 54, 81, 93, 118, 213
PspPI GGNCC 2 cut(s) 192, 212
PspPPI RGGWCCY 1 cut(s) 212
PsuI RGATCY 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 368
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 5 cut(s) 26, 116, 132, 137, 342
Sau96I GGNCC 2 cut(s) 192, 212
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 55
SetI ASST 6 cut(s) 17, 25, 43, 151, 172, 281
SfaNI GCATC 3 cut(s) 190, 274, 275
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 368
SphI GCATGC 1 cut(s) 291
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 1 cut(s) 34
SspMI CTAG 2 cut(s) 276, 412
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 25
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 212
XceI RCATGY 2 cut(s) 291, 403
XspI CTAG 2 cut(s) 276, 412
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.