Rroxscaffold_7G00183940

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001113
Physical Location & Seq
Forward (+)
23109757 .. 23116613
6857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183940.1

Sequence Viewer

Length: 2511 bp
ATGACACCCGAACCTCAGCTTCGGCTCCAAACGTCCTCATCACCGGAGAGAATCTTGCGTGGGGTGGACCACACGGACACGTGGTGGGAAGGGGCAATCACTGCCCAGAAGTGGGGGTGTTTTGGTTTTGGCGCTAGGGTTTATGAGGTGGAGATCGCGCCGGACGGCACTGTAGAGGCGTTGATCCGTTTCACTGTGAGGAACTCGATTATGAGGATGAAAGGGAGAAATGTTTTAGAAGTTGTGCATTATGTGATTTTTGGCTGCTTGAAGAATTTCAGTGTAGTTCATGACGATAATTTGGAGATAGAGTCGCTTGATGTTTATATTCATGATTATTTGTTGAAAAGGAAATTGACTGCTTCTGCAAATACATTTATGACTGAAGGGAAGGTTGCTACAGATCCAGTAGCAATTGATGCACCAGGAGGATTCCTCTTTGAATGGTGGTCTGTTTTCTGGGACATATTCATAGCAAGGACAAATGAGAAGCACTCAGAGGCTGCTGCATCTTACATTGAGGCACAGCAAATTAAGACGAGGGAGCAACAGCAGTTGCAAATGCAGCAGATGCAGATATTGCAGCAGCGTAATGCTCAGTTACAGCGTAGAGATCCAAATGCTTTAAATGCTATAAACCCTGAAGGGGTAATGGGGCAACCTTCAGCCAGTGTGCTAGCCATGAAAATGTATGAAGAACGCATGAAACATCCTCACTCGATGGATGCTGAAGCATCCCCAGGTCTTACTGATGCCAATAGGATTGCCCTTCTCAAATCAGCTACAAATGCACAAGGCCAGTTGACACAAAGCAATTCCGGAAACATGTCTGCTGCTTTGCAGCAAATGCAAGCACGCAATCCTTTGACCACTGACATCAAAAGTGAAGTTAACTTAGGATTGAATCAAGGTGTCACAGGTCTTCCTTTGAAGGGTTGGCCTCTTACTGGAATCGACCAATTACGACCAAACTTGGGTGTACAAGTACAGAAGTCAAATTTTCAGACCCAAAGTCAATTCCTTTTAGCACCTCAACAACAGCAAGTCTTGGCACAAGCCCAGGCTCAGGCACAAAACAACCTTGGAAATTCAACAAGCTACGGAGATCTGGATCCTCGTAGGTTTTCTGGTTTGCCTAGGAGTGGCATGAATGCAAAAGATGGTCAATCTCCAATGCAGTCAAGTTCACCAAAGATAAAAATGCCTCAGATGCAACAGTCTTCCTCCCACTCCCAACAACATGACCAATTGCAGCAGCAGCCATTACAACAGAATAACAGAAAAAGGAAACAACACTCTTCTTCTGGACCTGCCAACAGCAACAACACGGGAAACACTGTTGGCCGTTCCCCTGGTTCTCCAGCATCAACTCACACACCAGGTGATGGAATTAACACAGCCAGTAGTCTGCAGCATGTTAACAACATTCCGAAAAGCTTGATGATGTATGGTCCAGAAGGAACAGGAGGTCTTCCATCATCTTCCAATTTATTGGAAGACATGGAACGATTTGGAGATGTTGGTACCTTAGAAGATAATGTGGAATCGTTTTTGTCACCTGATGGGGGAGATGGTAGGGATGTATATGGGACACTGAAGCAGAGTCCTAGTGAGCCCAGGAAGGAGTCTTCTAAAGGTTTTACCTTTGGTGAAGTTGGTTGCATAAGGACCAGAAGCAGCAAAGTGACCTGCTGTCACTTTTCTTCGGATGGGAAGTTGCTGGCTAGTGCTGGACATGACAAAAAGGTTGTCCTCTGGAACATGGATACCCTGCAGACAGAGAGCACTCCTGAAGAACACAAGTTGGTCATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGCTGGCAACAGCTTCAGTTGACAAAACTGTGCGATTATGGGATGCAGCCAATCCAAACTATTGTTTGCAAGCATATACAGGGCACAACTCACCTGTTATGTCCCTTGACTTCCACCCTAAGAAGACCGATCTATTTTGTTTCTGTGATAGCGACAATGAAATTCGTTACTGGAATATCAGTCCATTCTCCTGTACTCGTTTTTCAAAGGGAGCTAATGCACAAGTTAGATTTCAACCCAGAGTGGGACAATTCCTGGCAGCAGCATCAGATAAAATTGTTTCCATCTTTGACGTCGAAACTGACAGGCAAACACACTCATTCCAGGGGCACTCTGAAACGGTAAACTACATTTGTTGGGATGCAAGTGGAGATTTTGTGGCGTCTGTCAGTCAAAGTTTGGTGAAGATTTGGTCGTTGGCTTCAGGACAGTGTATTCAGGAGCTTGGCCCAAATGGGAACCAGTTTCACTCGTGCGTTTTTCATCCAAGTTATTCAACTCTCTTGGTCATTGGAGGAATCTCGTCCTTGGAGCTGTGGAACATGGCTGAGAATAAGAGCATGACAATTCCGGCACATGAGAATATAATCTCAGCTCTGGCTCAGTCATCCGAAACCGGAATGGTTGCATCTGCAAGTCACGATAGCTCCGTCAAGTTATGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

836

Amino Acids

92.11

Weight (kDa)

6.38

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 551 - 652 7.7e-13 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 551 - 754 2.8e-13 MABP1/WDR62 second WD40 domain
EIF3I PF24805 554 - 632 5.1e-07 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 556 - 660 8.6e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 557 - 681 1.6e-26 WDR5 beta-propeller domain
WD40_Prp19 PF24814 557 - 829 1.7e-36 Prp19 WD40 domain
WD40_Gbeta PF25391 559 - 672 4.6e-10 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 559 - 676 1.8e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 559 - 687 2.8e-14 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 559 - 656 8.4e-08 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 559 - 634 2.6e-11 WDHD1 first WD40 domain
WD40 PF00400 559 - 587 7.6e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 559 - 674 9e-22 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 559 - 633 8.3e-16 THOC3 beta-propeller domain
Beta-prop_EML PF23409 561 - 741 6.1e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz PF24807 592 - 745 9.9e-13 CDC20/Fizzy WD40 domain
WD40 PF00400 596 - 629 2.6e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 600 - 690 2.4e-14 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 636 - 746 1.2e-06 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 639 - 784 6.9e-13 WDHD1 first WD40 domain
WDR55 PF24796 647 - 802 2.3e-07 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 665 - 761 1.5e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 668 - 834 2.8e-07 WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st PF24817 680 - 836 1.3e-11 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 687 - 835 8.7e-25 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 688 - 835 9.2e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 689 - 836 4.2e-17 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 697 - 835 5.7e-10 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 698 - 817 3.9e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 730 - 836 8.7e-09 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2139
Acc36I ACCTGC 2 cut(s) 1318, 1697
Acc65I GGTACC 1 cut(s) 1523
AccB1I GGYRCC 1 cut(s) 1523
AccB7I CCANNNNNTGG 1 cut(s) 1385
AccII CGCG 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 818
AclWI GGATC 5 cut(s) 178, 398, 608, 1106, 1119
AcoI YGGCCR 1 cut(s) 1342
AcsI RAATTY 5 cut(s) 274, 997, 1087, 1834, 2004
AcuI CTGAAG 8 cut(s) 405, 648, 663, 750, 1616, 1812, 1842, 2250
AcvI CACGTG 1 cut(s) 81
AcyI GRCGYC 2 cut(s) 2136, 2225
AdeI CACNNNGTG 2 cut(s) 84, 1382
AfaI GTAC 4 cut(s) 981, 987, 1525, 2038
AflIII ACRYGT 2 cut(s) 78, 825
AgsI TTSAA 9 cut(s) 271, 346, 443, 904, 931, 1092, 2049, 2078, 2340
AhdI GACNNNNNGTC 2 cut(s) 1011, 1692
AjnI CCWGG 8 cut(s) 424, 739, 1059, 1351, 1378, 1616, 2097, 2166
Alw21I GWGCWC 1 cut(s) 1787
AlwI GGATC 5 cut(s) 178, 398, 608, 1106, 1119
AlwNI CAGNNNCTG 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 818
AoxI GGCC 4 cut(s) 796, 938, 1342, 2290
ApoI RAATTY 5 cut(s) 274, 997, 1087, 1834, 2004
ArsI GACNNNNNNTTYG 2 cut(s) 1734, 1766
Asp700I GAANNNNTTC 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 1523
AspA2I CCTAGG 1 cut(s) 1136
AspLEI GCGC 2 cut(s) 134, 160
AspS9I GGNCC 5 cut(s) 67, 1307, 1451, 1668, 2291
AsuHPI GGTGA 7 cut(s) 33, 1179, 1394, 1548, 1661, 1926, 2257
AsuNHI GCTAGC 1 cut(s) 676
AvaII GGWCC 4 cut(s) 67, 1307, 1451, 1668
AvrII CCTAGG 1 cut(s) 1136
BaeGI GKGCMC 2 cut(s) 1929, 2175
BamHI GGATCC 1 cut(s) 1111
BanI GGYRCC 1 cut(s) 1523
BanII GRGCYC 1 cut(s) 1617
BauI CACGAG 1 cut(s) 2314
BbrPI CACGTG 1 cut(s) 81
BbsI GAAGAC 6 cut(s) 914, 1212, 1463, 1503, 1620, 1973
Bbv12I GWGCWC 1 cut(s) 1787
BbvCI CCTCAGC 1 cut(s) 15
BccI CCATC 8 cut(s) 715, 1154, 1379, 1483, 1556, 1565, 1703, 2135
BceAI ACGGC 2 cut(s) 181, 1329
BciT130I CCWGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
BciVI GTATCC 1 cut(s) 1759
BfaI CTAG 5 cut(s) 135, 677, 1137, 1608, 1725
BfmI CTRYAG 4 cut(s) 171, 399, 1409, 1772
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 1318, 1697
BfuI GTATCC 1 cut(s) 1759
BglII AGATCT 1 cut(s) 1105
BlnI CCTAGG 1 cut(s) 1136
Bme1390I CCNGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
Bme18I GGWCC 4 cut(s) 67, 1307, 1451, 1668
BmeRI GACNNNNNGTC 2 cut(s) 1011, 1692
BmgT120I GGNCC 5 cut(s) 67, 1307, 1451, 1668, 2291
BmiI GGNNCC 4 cut(s) 26, 1113, 1525, 2303
BmrFI CCNGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
BmtI GCTAGC 1 cut(s) 680
BpiI GAAGAC 6 cut(s) 914, 1212, 1463, 1503, 1620, 1973
BplI GAGNNNNNCTC 4 cut(s) 420, 452, 479, 511
BpmI CTGGAG 1 cut(s) 1344
Bpu10I CCTNAGC 2 cut(s) 15, 1065
BsaAI YACGTR 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 1110
BsaHI GRCGYC 2 cut(s) 2136, 2225
BsaJI CCNNGG 8 cut(s) 739, 1059, 1081, 1136, 1351, 1616, 2167, 2370
BsaWI WCCGGW 3 cut(s) 43, 818, 2459
BsaXI ACNNNNNCTCC 6 cut(s) 296, 326, 2205, 2235, 2474, 2504
Bse1I ACTGG 7 cut(s) 407, 669, 799, 952, 1401, 2018, 2305
Bse8I GATNNNNATC 1 cut(s) 1110
BseAI TCCGGA 1 cut(s) 818
BseBI CCWGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
BseDI CCNNGG 8 cut(s) 739, 1059, 1081, 1136, 1351, 1616, 2167, 2370
BseJI GATNNNNATC 1 cut(s) 1110
BseMII CTCAG 9 cut(s) 29, 510, 611, 1079, 1220, 1856, 2382, 2448, 2459
BseNI ACTGG 7 cut(s) 407, 669, 799, 952, 1401, 2018, 2305
BseSI GKGCMC 2 cut(s) 1929, 2175
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 4 cut(s) 798, 940, 1344, 2292
BshNI GGYRCC 1 cut(s) 1523
BsiHKAI GWGCWC 1 cut(s) 1787
BsiSI CCGG 5 cut(s) 44, 161, 819, 2414, 2460
BslFI GGGAC 4 cut(s) 476, 1603, 1930, 2103
BsmFI GGGAC 4 cut(s) 476, 1603, 1930, 2103
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 4 cut(s) 798, 940, 1344, 2292
Bsp1286I GDGCHC 4 cut(s) 1617, 1787, 1929, 2175
Bsp13I TCCGGA 1 cut(s) 818
Bsp1407I TGTACA 1 cut(s) 979
Bsp143I GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
BspANI GGCC 4 cut(s) 798, 940, 1344, 2292
BspCNI CTCAG 9 cut(s) 28, 509, 610, 1078, 1219, 1855, 2383, 2447, 2458
BspEI TCCGGA 1 cut(s) 818
BspFNI CGCG 1 cut(s) 158
BspHI TCATGA 2 cut(s) 289, 331
BspLI GGNNCC 4 cut(s) 26, 1113, 1525, 2303
BspMAI CTGCAG 2 cut(s) 1413, 1776
BspMI ACCTGC 2 cut(s) 1318, 1697
BspOI GCTAGC 1 cut(s) 680
BspPI GGATC 5 cut(s) 178, 398, 608, 1106, 1119
BspT107I GGYRCC 1 cut(s) 1523
BsrGI TGTACA 1 cut(s) 979
BsrI ACTGG 7 cut(s) 407, 669, 799, 952, 1401, 2018, 2305
BssECI CCNNGG 8 cut(s) 739, 1059, 1081, 1136, 1351, 1616, 2167, 2370
BssMI GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
BssNI GRCGYC 2 cut(s) 2136, 2225
BssSI CACGAG 1 cut(s) 2314
BssT1I CCWWGG 3 cut(s) 1081, 1136, 2370
Bst2BI CACGAG 1 cut(s) 2314
Bst2UI CCWGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
Bst4CI ACNGT 7 cut(s) 172, 196, 1218, 1339, 1873, 2185, 2274
Bst6I CTCTTC 1 cut(s) 1303
BstACI GRCGYC 2 cut(s) 2136, 2225
BstAPI GCANNNNNTGC 5 cut(s) 101, 419, 571, 580, 847
BstAUI TGTACA 1 cut(s) 979
BstBAI YACGTR 1 cut(s) 81
BstC8I GCNNGC 6 cut(s) 678, 852, 856, 1722, 1848, 1914
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 160
BstKTI GATC 7 cut(s) 156, 186, 406, 616, 1108, 1114, 1975
BstMBI GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
BstNI CCWGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
BstNSI RCATGY 2 cut(s) 829, 1418
BstSCI CCNGG 8 cut(s) 424, 739, 1059, 1351, 1378, 1616, 2097, 2166
BstSFI CTRYAG 4 cut(s) 171, 399, 1409, 1772
BstSLI GKGCMC 2 cut(s) 1929, 2175
BstUI CGCG 1 cut(s) 158
BstV2I GAAGAC 6 cut(s) 914, 1212, 1463, 1503, 1620, 1973
BstX2I RGATCY 4 cut(s) 403, 613, 1105, 1111
BstXI CCANNNNNNTGG 1 cut(s) 1492
BstYI RGATCY 4 cut(s) 403, 613, 1105, 1111
BsuI GTATCC 1 cut(s) 1759
BsuRI GGCC 4 cut(s) 798, 940, 1344, 2292
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 9 cut(s) 99, 168, 192, 286, 676, 870, 1335, 1592, 2279
BveI ACCTGC 2 cut(s) 1318, 1697
Cac8I GCNNGC 6 cut(s) 678, 852, 856, 1722, 1848, 1914
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 2 cut(s) 289, 331
CfoI GCGC 2 cut(s) 134, 160
Cfr13I GGNCC 5 cut(s) 67, 1307, 1451, 1668, 2291
CseI GACGC 1 cut(s) 2214
CsiI ACCWGGT 1 cut(s) 1378
Csp6I GTAC 4 cut(s) 980, 986, 1524, 2037
CviQI GTAC 4 cut(s) 980, 986, 1524, 2037
DpnI GATC 7 cut(s) 155, 185, 405, 615, 1107, 1113, 1974
DpnII GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
DraI TTTAAA 1 cut(s) 627
DraIII CACNNNGTG 2 cut(s) 84, 1382
DriI GACNNNNNGTC 2 cut(s) 1011, 1692
EaeI YGGCCR 1 cut(s) 1342
Eam1104I CTCTTC 1 cut(s) 1303
Eam1105I GACNNNNNGTC 2 cut(s) 1011, 1692
EarI CTCTTC 1 cut(s) 1303
Eco130I CCWWGG 3 cut(s) 1081, 1136, 2370
Eco24I GRGCYC 1 cut(s) 1617
Eco47I GGWCC 4 cut(s) 67, 1307, 1451, 1668
Eco57I CTGAAG 8 cut(s) 405, 648, 663, 750, 1616, 1812, 1842, 2250
Eco72I CACGTG 1 cut(s) 81
EcoRII CCWGG 8 cut(s) 424, 739, 1059, 1351, 1378, 1616, 2097, 2166
EcoT14I CCWWGG 3 cut(s) 1081, 1136, 2370
EcoT38I GRGCYC 1 cut(s) 1617
ErhI CCWWGG 3 cut(s) 1081, 1136, 2370
FaqI GGGAC 4 cut(s) 476, 1603, 1930, 2103
FriOI GRGCYC 1 cut(s) 1617
FspBI CTAG 5 cut(s) 135, 677, 1137, 1608, 1725
GlaI GCGC 2 cut(s) 133, 159
GsuI CTGGAG 1 cut(s) 1344
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 4 cut(s) 798, 940, 1344, 2292
HapII CCGG 5 cut(s) 44, 161, 819, 2414, 2460
HgaI GACGC 1 cut(s) 2214
HhaI GCGC 2 cut(s) 134, 160
Hin1I GRCGYC 2 cut(s) 2136, 2225
Hin6I GCGC 2 cut(s) 132, 158
HinP1I GCGC 2 cut(s) 132, 158
HincII GTYRAC 4 cut(s) 804, 892, 1420, 1864
HindII GTYRAC 4 cut(s) 804, 892, 1420, 1864
HindIII AAGCTT 1 cut(s) 1435
HinfI GANTC 9 cut(s) 51, 311, 432, 904, 951, 1544, 1603, 1625, 2361
HpaI GTTAAC 2 cut(s) 892, 1420
HpaII CCGG 5 cut(s) 44, 161, 819, 2414, 2460
HphI GGTGA 7 cut(s) 33, 1179, 1394, 1548, 1661, 1926, 2257
Hpy166II GTNNAC 8 cut(s) 67, 804, 892, 980, 1187, 1420, 1864, 2188
Hpy188I TCNGA 8 cut(s) 499, 1005, 1209, 1431, 1708, 2113, 2179, 2455
Hpy8I GTNNAC 8 cut(s) 67, 804, 892, 980, 1187, 1420, 1864, 2188
Hpy99I CGWCG 1 cut(s) 2141
HpyAV CCTTC 9 cut(s) 83, 380, 385, 638, 672, 779, 925, 1451, 1615
HpyCH4III ACNGT 7 cut(s) 172, 196, 1218, 1339, 1873, 2185, 2274
HpyCH4IV ACGT 3 cut(s) 32, 80, 2136
HpySE526I ACGT 3 cut(s) 32, 80, 2136
Hsp92I GRCGYC 2 cut(s) 2136, 2225
HspAI GCGC 2 cut(s) 132, 158
Kpn2I TCCGGA 1 cut(s) 818
KpnI GGTACC 1 cut(s) 1527
KspAI GTTAAC 2 cut(s) 892, 1420
Kzo9I GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
LmnI GCTCC 6 cut(s) 30, 544, 2054, 2284, 2374, 2495
MabI ACCWGGT 1 cut(s) 1378
MaeI CTAG 5 cut(s) 135, 677, 1137, 1608, 1725
MaeII ACGT 3 cut(s) 32, 80, 2136
MaeIII GTNAC 7 cut(s) 600, 913, 1554, 1684, 1694, 2009, 2480
MalI GATC 7 cut(s) 155, 185, 405, 615, 1107, 1113, 1974
MboI GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
MfeI CAATTG 2 cut(s) 414, 1247
MflI RGATCY 4 cut(s) 403, 613, 1105, 1111
MhlI GDGCHC 4 cut(s) 1617, 1787, 1929, 2175
MlyI GAGTC 3 cut(s) 320, 1612, 1634
MroI TCCGGA 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 5 cut(s) 534, 626, 891, 1392, 1419
MslI CAYNNNNRTG 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 1846
MspI CCGG 5 cut(s) 44, 161, 819, 2414, 2460
MspR9I CCNGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
MunI CAATTG 2 cut(s) 414, 1247
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
MvnI CGCG 1 cut(s) 158
NdeII GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
NheI GCTAGC 1 cut(s) 676
NlaIV GGNNCC 4 cut(s) 26, 1113, 1525, 2303
NmuCI GTSAC 5 cut(s) 913, 1554, 1684, 1694, 2480
NspI RCATGY 2 cut(s) 829, 1418
PagI TCATGA 2 cut(s) 289, 331
PciI ACATGT 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 2490
PctI GAATGC 1 cut(s) 1156
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 6 cut(s) 51, 432, 904, 951, 1544, 2361
PflMI CCANNNNNTGG 1 cut(s) 1385
PleI GAGTC 3 cut(s) 319, 1611, 1633
PmaCI CACGTG 1 cut(s) 81
PmlI CACGTG 1 cut(s) 81
PpsI GAGTC 3 cut(s) 319, 1611, 1633
Ppu21I YACGTR 1 cut(s) 81
PscI ACATGT 1 cut(s) 825
Psp6I CCWGG 8 cut(s) 424, 739, 1059, 1351, 1378, 1616, 2097, 2166
PspCI CACGTG 1 cut(s) 81
PspGI CCWGG 8 cut(s) 424, 739, 1059, 1351, 1378, 1616, 2097, 2166
PspN4I GGNNCC 4 cut(s) 26, 1113, 1525, 2303
PspPI GGNCC 5 cut(s) 67, 1307, 1451, 1668, 2291
PstI CTGCAG 2 cut(s) 1413, 1776
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 4 cut(s) 403, 613, 1105, 1111
PvuII CAGCTG 1 cut(s) 1846
RsaI GTAC 4 cut(s) 981, 987, 1525, 2038
RsaNI GTAC 4 cut(s) 980, 986, 1524, 2037
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 5 cut(s) 534, 626, 891, 1392, 1419
Sau3AI GATC 7 cut(s) 153, 183, 403, 613, 1105, 1111, 1972
Sau96I GGNCC 5 cut(s) 67, 1307, 1451, 1668, 2291
SchI GAGTC 3 cut(s) 320, 1612, 1634
ScrFI CCNGG 8 cut(s) 426, 741, 1061, 1353, 1380, 1618, 2099, 2168
SduI GDGCHC 4 cut(s) 1617, 1787, 1929, 2175
SexAI ACCWGGT 1 cut(s) 1378
SfcI CTRYAG 4 cut(s) 171, 399, 1409, 1772
SinI GGWCC 4 cut(s) 67, 1307, 1451, 1668
SmiMI CAYNNNNRTG 1 cut(s) 686
SspMI CTAG 5 cut(s) 135, 677, 1137, 1608, 1725
StyD4I CCNGG 8 cut(s) 424, 739, 1059, 1351, 1378, 1616, 2097, 2166
StyI CCWWGG 3 cut(s) 1081, 1136, 2370
TaaI ACNGT 7 cut(s) 172, 196, 1218, 1339, 1873, 2185, 2274
TaiI ACGT 3 cut(s) 35, 83, 2139
TaqI TCGA 4 cut(s) 206, 719, 954, 2139
TaqII GACCGA 1 cut(s) 1985
TatI WGTACW 3 cut(s) 979, 985, 2036
TfiI GAWTC 6 cut(s) 51, 432, 904, 951, 1544, 2361
Tru1I TTAA 5 cut(s) 534, 626, 891, 1392, 1419
Tru9I TTAA 5 cut(s) 534, 626, 891, 1392, 1419
TscAI CASTG 9 cut(s) 106, 175, 199, 286, 676, 877, 1342, 1599, 2279
TseFI GTSAC 5 cut(s) 913, 1554, 1684, 1694, 2480
Tsp45I GTSAC 5 cut(s) 913, 1554, 1684, 1694, 2480
TspGWI ACGGA 4 cut(s) 89, 176, 1116, 2482
TspRI CASTG 9 cut(s) 106, 175, 199, 286, 676, 877, 1342, 1599, 2279
Van91I CCANNNNNTGG 1 cut(s) 1385
VpaK11BI GGWCC 4 cut(s) 67, 1307, 1451, 1668
XapI RAATTY 5 cut(s) 274, 997, 1087, 1834, 2004
XceI RCATGY 2 cut(s) 829, 1418
XmaJI CCTAGG 1 cut(s) 1136
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 5 cut(s) 135, 677, 1137, 1608, 1725
ZraI GACGTC 1 cut(s) 2137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.